COL13A1 13979

Name: COL13A1	Sequence: fasta or formatted (690aa)		NCBI GI: 22027597
Description: alpha 1 type XIII collagen isoform 13		Referenced in: Collagen
Other entries for this name: alt prot [717aa] alpha 1 type XIII collagen isoform 20 alt prot [717aa] alpha 1 type XIII collagen isoform 1 alt prot [705aa] alpha 1 type XIII collagen isoform 2 alt prot [700aa] alpha 1 type XIII collagen isoform 3 alt prot [698aa] alpha 1 type XIII collagen isoform 4 alt prot [695aa] alpha 1 type XIII collagen isoform 5 alt prot [702aa] alpha 1 type XIII collagen isoform 6 alt prot [703aa] alpha 1 type XIII collagen isoform 7 alt prot [705aa] alpha 1 type XIII collagen isoform 8 alt prot [688aa] alpha 1 type XIII collagen isoform 9 alt prot [676aa] alpha 1 type XIII collagen isoform 10 alt prot [686aa] alpha 1 type XIII collagen isoform 11 alt prot [691aa] alpha 1 type XIII collagen isoform 12 alt prot [664aa] alpha 1 type XIII collagen isoform 14 alt prot [668aa] alpha 1 type XIII collagen isoform 15 alt prot [660aa] alpha 1 type XIII collagen isoform 16 alt prot [657aa] alpha 1 type XIII collagen isoform 17 alt prot [655aa] alpha 1 type XIII collagen isoform 18 alt prot [610aa] alpha 1 type XIII collagen isoform 19
Composition: Amino acid Percentage Count Longest homopolymer A alanine 6.8 47 3 C cysteine 1.2 8 1 D aspartate 3.2 22 1 E glutamate 5.8 40 1 F phenylalanine 0.9 6 1 G glycine 25.2 174 3 H histidine 1.6 11 1 I isoleucine 2.8 19 2 K lysine 6.4 44 2 L leucine 7.5 52 2 M methionine 1.9 13 1 N asparagine 1.4 10 1 P proline 17.2 119 3 Q glutamine 4.2 29 2 R arginine 4.9 34 4 S serine 3.3 23 2 T threonine 2.5 17 1 V valine 2.5 17 1 W tryptophan 0.3 2 1 Y tyrosine 0.4 3 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 alpha 1 type XIII collagen isoform 13 COL13A1 0.994 alpha 1 type XIII collagen isoform 6 COL13A1 0.993 alpha 1 type XIII collagen isoform 8 COL13A1 0.988 alpha 1 type XIII collagen isoform 1 COL13A1 0.982 alpha 1 type XIII collagen isoform 20 COL13A1 0.979 alpha 1 type XIII collagen isoform 12 COL13A1 0.974 alpha 1 type XIII collagen isoform 7 COL13A1 0.964 alpha 1 type XIII collagen isoform 2 COL13A1 0.962 alpha 1 type XIII collagen isoform 15 COL13A1 0.962 alpha 1 type XIII collagen isoform 11 COL13A1 0.956 alpha 1 type XIII collagen isoform 4 COL13A1 0.955 alpha 1 type XIII collagen isoform 3 COL13A1 0.950 alpha 1 type XIII collagen isoform 5 COL13A1 0.935 alpha 1 type XIII collagen isoform 9 COL13A1 0.921 alpha 1 type XIII collagen isoform 10 COL13A1 0.897 alpha 1 type XIII collagen isoform 14 COL13A1 0.886 alpha 1 type XIII collagen isoform 16 COL13A1 0.879 alpha 1 type XIII collagen isoform 17 COL13A1 0.879 alpha 1 type XIII collagen isoform 18 COL13A1 0.856 alpha 1 type XIII collagen isoform 19 COL25A1 0.304 collagen, type XXV, alpha 1 isoform 1 COL4A5 0.287 type IV collagen alpha 5 isoform 2 precursor COL4A5 0.287 type IV collagen alpha 5 isoform 1 precursor COL4A5 0.287 type IV collagen alpha 5 isoform 3 precursor COL5A2 0.284 alpha 2 type V collagen preproprotein COL5A1 0.283 alpha 1 type V collagen preproprotein COL11A1 0.278 alpha 1 type XI collagen isoform B preproprotein [Ho... COL11A1 0.278 alpha 1 type XI collagen isoform C preproprotein [Ho... COL11A1 0.278 alpha 1 type XI collagen isoform A preproprotein [Ho... COL1A1 0.276 alpha 1 type I collagen preproprotein Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.