COL13A1 13972

Name: COL13A1	Sequence: fasta or formatted (702aa)		NCBI GI: 22027580
Description: alpha 1 type XIII collagen isoform 6		Referenced in: Collagen
Other entries for this name: alt prot [717aa] alpha 1 type XIII collagen isoform 20 alt prot [717aa] alpha 1 type XIII collagen isoform 1 alt prot [705aa] alpha 1 type XIII collagen isoform 2 alt prot [700aa] alpha 1 type XIII collagen isoform 3 alt prot [698aa] alpha 1 type XIII collagen isoform 4 alt prot [695aa] alpha 1 type XIII collagen isoform 5 alt prot [703aa] alpha 1 type XIII collagen isoform 7 alt prot [705aa] alpha 1 type XIII collagen isoform 8 alt prot [688aa] alpha 1 type XIII collagen isoform 9 alt prot [676aa] alpha 1 type XIII collagen isoform 10 alt prot [686aa] alpha 1 type XIII collagen isoform 11 alt prot [691aa] alpha 1 type XIII collagen isoform 12 alt prot [690aa] alpha 1 type XIII collagen isoform 13 alt prot [664aa] alpha 1 type XIII collagen isoform 14 alt prot [668aa] alpha 1 type XIII collagen isoform 15 alt prot [660aa] alpha 1 type XIII collagen isoform 16 alt prot [657aa] alpha 1 type XIII collagen isoform 17 alt prot [655aa] alpha 1 type XIII collagen isoform 18 alt prot [610aa] alpha 1 type XIII collagen isoform 19
Composition: Amino acid Percentage Count Longest homopolymer A alanine 6.8 48 3 C cysteine 1.1 8 1 D aspartate 3.3 23 1 E glutamate 5.7 40 1 F phenylalanine 0.9 6 1 G glycine 25.4 178 3 H histidine 1.6 11 1 I isoleucine 2.7 19 2 K lysine 6.3 44 2 L leucine 7.5 53 2 M methionine 1.9 13 1 N asparagine 1.4 10 1 P proline 17.4 122 3 Q glutamine 4.1 29 2 R arginine 5.0 35 4 S serine 3.4 24 2 T threonine 2.4 17 1 V valine 2.4 17 1 W tryptophan 0.3 2 1 Y tyrosine 0.4 3 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 alpha 1 type XIII collagen isoform 6 COL13A1 0.993 alpha 1 type XIII collagen isoform 1 COL13A1 0.988 alpha 1 type XIII collagen isoform 20 COL13A1 0.980 alpha 1 type XIII collagen isoform 7 COL13A1 0.976 alpha 1 type XIII collagen isoform 13 COL13A1 0.970 alpha 1 type XIII collagen isoform 2 COL13A1 0.970 alpha 1 type XIII collagen isoform 8 COL13A1 0.962 alpha 1 type XIII collagen isoform 4 COL13A1 0.961 alpha 1 type XIII collagen isoform 3 COL13A1 0.956 alpha 1 type XIII collagen isoform 12 COL13A1 0.956 alpha 1 type XIII collagen isoform 5 COL13A1 0.942 alpha 1 type XIII collagen isoform 9 COL13A1 0.939 alpha 1 type XIII collagen isoform 15 COL13A1 0.938 alpha 1 type XIII collagen isoform 11 COL13A1 0.928 alpha 1 type XIII collagen isoform 10 COL13A1 0.905 alpha 1 type XIII collagen isoform 14 COL13A1 0.894 alpha 1 type XIII collagen isoform 16 COL13A1 0.887 alpha 1 type XIII collagen isoform 17 COL13A1 0.886 alpha 1 type XIII collagen isoform 18 COL13A1 0.834 alpha 1 type XIII collagen isoform 19 COL4A5 0.293 type IV collagen alpha 5 isoform 1 precursor COL25A1 0.293 collagen, type XXV, alpha 1 isoform 1 COL4A5 0.293 type IV collagen alpha 5 isoform 3 precursor COL4A5 0.292 type IV collagen alpha 5 isoform 2 precursor COL5A1 0.291 alpha 1 type V collagen preproprotein COL5A2 0.287 alpha 2 type V collagen preproprotein COL11A1 0.283 alpha 1 type XI collagen isoform B preproprotein [Ho... COL11A1 0.283 alpha 1 type XI collagen isoform C preproprotein [Ho... COL11A1 0.283 alpha 1 type XI collagen isoform A preproprotein [Ho... COL1A1 0.279 alpha 1 type I collagen preproprotein Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.