Guide to the Human Genome
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Name: GABRE Sequence: fasta or formatted (506aa) NCBI GI: 52426761
Description:

gamma-aminobutyric acid (GABA) A receptor, epsilon precursor

Referenced in:

GABA and Glycine

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.0         20           1
 C cysteine            3.4         17           2
 D aspartate           3.2         16           1
 E glutamate           6.1         31           2
 F phenylalanine       6.5         33           4
 G glycine             4.3         22           1
 H histidine           2.0         10           1
 I isoleucine          5.7         29           2
 K lysine              4.3         22           2
 L leucine             8.9         45           2
 M methionine          2.6         13           1
 N asparagine          4.7         24           1
 P proline             5.5         28           2
 Q glutamine           3.6         18           2
 R arginine            5.9         30           2
 S serine              9.5         48           2
 T threonine           7.3         37           2
 V valine              7.1         36           2
 W tryptophan          1.8          9           1
 Y tyrosine            3.6         18           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   gamma-aminobutyric acid (GABA) A receptor, epsilon p... 
GABRG3                0.378   gamma-aminobutyric acid (GABA) A receptor, gamma 3 ...
GABRG2                0.378   gamma-aminobutyric acid A receptor, gamma 2 isoform ...
GABRG2                0.376   gamma-aminobutyric acid A receptor, gamma 2 isoform ...
GABRG1                0.371   gamma-aminobutyric acid A receptor, gamma 1 precurso...
GABRG2                0.357   gamma-aminobutyric acid A receptor, gamma 2 isoform...
GABRA6                0.288   gamma-aminobutyric acid A receptor, alpha 6 precurs...
GABRA3                0.275   gamma-aminobutyric acid A receptor, alpha 3 precursor...
GABRA5                0.275   gamma-aminobutyric acid (GABA) A receptor, alpha 5 pr...
GABRA4                0.275   gamma-aminobutyric acid A receptor, alpha 4 precurso...
GABRA1                0.269   gamma-aminobutyric acid (GABA) A receptor, alpha 1 ...
GABRA1                0.269   gamma-aminobutyric acid (GABA) A receptor, alpha 1 ...
GABRA1                0.269   gamma-aminobutyric acid (GABA) A receptor, alpha 1 ...
GABRA1                0.269   gamma-aminobutyric acid (GABA) A receptor, alpha 1 ...
GABRA1                0.269   gamma-aminobutyric acid (GABA) A receptor, alpha 1 ...
GABRA1                0.269   gamma-aminobutyric acid (GABA) A receptor, alpha 1 ...
GABRA1                0.269   gamma-aminobutyric acid (GABA) A receptor, alpha 1 p...
GABRA2                0.264   gamma-aminobutyric acid A receptor, alpha 2 
GABRA2                0.264   gamma-aminobutyric acid A receptor, alpha 2 precurs...
GABRB3                0.224   gamma-aminobutyric acid (GABA) A receptor, beta 3 is...
GABRB1                0.224   gamma-aminobutyric acid (GABA) A receptor, beta 1 p...
GABRB2                0.222   gamma-aminobutyric acid (GABA) A receptor, beta 2 iso...
GABRB3                0.222   gamma-aminobutyric acid (GABA) A receptor, beta 3 iso...
GABRD                 0.216   gamma-aminobutyric acid (GABA) A receptor, delta pre...
GABRB2                0.211   gamma-aminobutyric acid (GABA) A receptor, beta 2 is...
GLRA1                 0.208   glycine receptor, alpha 1 isoform 2 precursor [Homo...
GLRA2                 0.208   glycine receptor, alpha 2 isoform B 
GLRA2                 0.208   glycine receptor, alpha 2 isoform A 
GLRA2                 0.208   glycine receptor, alpha 2 isoform A 
GLRA1                 0.207   glycine receptor, alpha 1 isoform 1 precursor [Homo...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
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