Guide to the Human Genome
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Name: GLRA2 Sequence: fasta or formatted (452aa) NCBI GI: 4504021
Description:

glycine receptor, alpha 2 isoform A

Referenced in:

GABA and Glycine

Other entries for this name:
alt mRNA [452aa] glycine receptor, alpha 2 isoform A
alt prot [452aa] glycine receptor, alpha 2 isoform B
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.0         27           2
 C cysteine            1.8          8           1
 D aspartate           6.2         28           2
 E glutamate           4.0         18           2
 F phenylalanine       6.9         31           2
 G glycine             4.4         20           1
 H histidine           2.0          9           1
 I isoleucine          6.0         27           2
 K lysine              6.6         30           3
 L leucine            10.0         45           2
 M methionine          3.1         14           1
 N asparagine          4.9         22           1
 P proline             4.6         21           2
 Q glutamine           3.8         17           2
 R arginine            5.8         26           3
 S serine              6.6         30           2
 T threonine           6.6         30           2
 V valine              5.8         26           1
 W tryptophan          1.5          7           1
 Y tyrosine            3.5         16           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   glycine receptor, alpha 2 isoform A 
GLRA2                 1.000   glycine receptor, alpha 2 isoform A 
GLRA2                 0.998   glycine receptor, alpha 2 isoform B 
GLRA3                 0.780   glycine receptor, alpha 3 isoform b 
GLRA3                 0.775   glycine receptor, alpha 3 isoform a 
GLRA1                 0.753   glycine receptor, alpha 1 isoform 2 precursor [Homo...
GLRA1                 0.749   glycine receptor, alpha 1 isoform 1 precursor [Homo...
GLRA4                 0.706   glycine receptor, alpha 4 precursor 
GLRB                  0.388   glycine receptor, beta 
GABRB3                0.298   gamma-aminobutyric acid (GABA) A receptor, beta 3 is...
GABRB3                0.297   gamma-aminobutyric acid (GABA) A receptor, beta 3 iso...
GABRB1                0.297   gamma-aminobutyric acid (GABA) A receptor, beta 1 p...
GABRB2                0.294   gamma-aminobutyric acid (GABA) A receptor, beta 2 iso...
GABRD                 0.294   gamma-aminobutyric acid (GABA) A receptor, delta pre...
GABRB2                0.287   gamma-aminobutyric acid (GABA) A receptor, beta 2 is...
GABRA6                0.281   gamma-aminobutyric acid A receptor, alpha 6 precurs...
GABRA2                0.280   gamma-aminobutyric acid A receptor, alpha 2 
GABRA2                0.280   gamma-aminobutyric acid A receptor, alpha 2 precurs...
GABRA1                0.279   gamma-aminobutyric acid (GABA) A receptor, alpha 1 ...
GABRA1                0.279   gamma-aminobutyric acid (GABA) A receptor, alpha 1 ...
GABRA1                0.279   gamma-aminobutyric acid (GABA) A receptor, alpha 1 ...
GABRA1                0.279   gamma-aminobutyric acid (GABA) A receptor, alpha 1 ...
GABRA1                0.279   gamma-aminobutyric acid (GABA) A receptor, alpha 1 ...
GABRA1                0.279   gamma-aminobutyric acid (GABA) A receptor, alpha 1 ...
GABRA1                0.279   gamma-aminobutyric acid (GABA) A receptor, alpha 1 p...
GABRR2                0.279   gamma-aminobutyric acid (GABA) receptor, rho 2 prec...
GABRR1                0.279   gamma-aminobutyric acid (GABA) receptor, rho 1 [Hom...
GABRA5                0.279   gamma-aminobutyric acid (GABA) A receptor, alpha 5 pr...
GABRP                 0.278   gamma-aminobutyric acid (GABA) A receptor, pi 
GABRA3                0.273   gamma-aminobutyric acid A receptor, alpha 3 precursor...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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