Guide to the Human Genome
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Name: GABRB1 Sequence: fasta or formatted (474aa) NCBI GI: 194097327
Description:

gamma-aminobutyric acid (GABA) A receptor, beta 1 precursor

Referenced in:

GABA and Glycine

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.6         22           2
 C cysteine            1.1          5           2
 D aspartate           5.9         28           2
 E glutamate           4.0         19           1
 F phenylalanine       4.4         21           2
 G glycine             5.5         26           2
 H histidine           1.5          7           1
 I isoleucine          6.1         29           1
 K lysine              5.7         27           2
 L leucine             9.5         45           2
 M methionine          3.8         18           2
 N asparagine          4.4         21           1
 P proline             4.2         20           2
 Q glutamine           2.7         13           2
 R arginine            5.7         27           3
 S serine              8.0         38           2
 T threonine           7.4         35           3
 V valine              8.0         38           2
 W tryptophan          1.7          8           1
 Y tyrosine            5.7         27           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   gamma-aminobutyric acid (GABA) A receptor, beta 1 p... 
GABRB2                0.791   gamma-aminobutyric acid (GABA) A receptor, beta 2 iso...
GABRB2                0.777   gamma-aminobutyric acid (GABA) A receptor, beta 2 is...
GABRB3                0.772   gamma-aminobutyric acid (GABA) A receptor, beta 3 iso...
GABRB3                0.746   gamma-aminobutyric acid (GABA) A receptor, beta 3 is...
GABRQ                 0.368   gamma-aminobutyric acid (GABA) receptor, theta precur...
GABRD                 0.344   gamma-aminobutyric acid (GABA) A receptor, delta pre...
GABRP                 0.322   gamma-aminobutyric acid (GABA) A receptor, pi 
GABRR1                0.314   gamma-aminobutyric acid (GABA) receptor, rho 1 [Hom...
GABRR2                0.313   gamma-aminobutyric acid (GABA) receptor, rho 2 prec...
GABRR3                0.301   gamma-aminobutyric acid (GABA) receptor, rho 3 [Hom...
GABRG2                0.290   gamma-aminobutyric acid A receptor, gamma 2 isoform ...
GABRG2                0.290   gamma-aminobutyric acid A receptor, gamma 2 isoform ...
GLRA2                 0.285   glycine receptor, alpha 2 isoform A 
GLRA2                 0.285   glycine receptor, alpha 2 isoform A 
GLRA2                 0.284   glycine receptor, alpha 2 isoform B 
GLRA3                 0.283   glycine receptor, alpha 3 isoform a 
GLRA1                 0.282   glycine receptor, alpha 1 isoform 1 precursor [Homo...
GLRA1                 0.280   glycine receptor, alpha 1 isoform 2 precursor [Homo...
GABRG1                0.277   gamma-aminobutyric acid A receptor, gamma 1 precurso...
GLRA3                 0.273   glycine receptor, alpha 3 isoform b 
GABRA2                0.273   gamma-aminobutyric acid A receptor, alpha 2 
GABRA2                0.273   gamma-aminobutyric acid A receptor, alpha 2 precurs...
GLRA4                 0.269   glycine receptor, alpha 4 precursor 
GLRB                  0.268   glycine receptor, beta 
GABRG2                0.268   gamma-aminobutyric acid A receptor, gamma 2 isoform...
GABRA4                0.267   gamma-aminobutyric acid A receptor, alpha 4 precurso...
GABRA5                0.266   gamma-aminobutyric acid (GABA) A receptor, alpha 5 pr...
GABRG3                0.264   gamma-aminobutyric acid (GABA) A receptor, gamma 3 ...
GABRA3                0.264   gamma-aminobutyric acid A receptor, alpha 3 precursor...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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