Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 47827222
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|47827222 solute carrier family 35, member E4 [Homo sapiens]
(350 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|47827222 solute carrier family 35, member E4 [Homo sapiens] 699 0.0
gi|160707905 similar to solute carrier family 35, member E2 [Hom... 75 7e-14
gi|56699411 solute carrier family 35, member E2 [Homo sapiens] 66 4e-11
gi|164607128 solute carrier family 35, member E1 [Homo sapiens] 66 4e-11
gi|223029426 solute carrier family 35, member D2 [Homo sapiens] 51 1e-06
gi|33469137 solute carrier family 35, member E2 [Homo sapiens] 42 6e-04
gi|18087849 solute carrier family 35, member A4 [Homo sapiens] 39 0.005
gi|14249528 solute carrier family 35, member B4 [Homo sapiens] 35 0.10
gi|14028875 solute carrier family 35 (UDP-glucuronic acid/UDP-N-... 34 0.22
gi|239046743 Nedd4 family interacting protein 2 isoform 2 [Homo ... 33 0.50
gi|239046738 Nedd4 family interacting protein 2 isoform 1 [Homo ... 33 0.50
gi|30026034 solute carrier family 35, member B2 [Homo sapiens] 33 0.50
gi|4502349 UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase 3 ... 31 1.4
gi|19924099 synapsin I isoform Ia [Homo sapiens] 31 1.4
gi|19924097 synapsin I isoform Ib [Homo sapiens] 31 1.4
gi|27262645 ataxin 2 related protein isoform B [Homo sapiens] 31 1.4
gi|27262653 ataxin 2 related protein isoform E [Homo sapiens] 31 1.4
gi|27262649 ataxin 2 related protein isoform C [Homo sapiens] 31 1.4
gi|27262647 ataxin 2 related protein isoform A [Homo sapiens] 31 1.4
gi|27262651 ataxin 2 related protein isoform D [Homo sapiens] 31 1.4
gi|170650694 centaurin, gamma 1 isoform PIKE-L [Homo sapiens] 31 1.9
gi|239747126 PREDICTED: hypothetical protein XP_002343919 [Homo ... 31 1.9
gi|9955968 ATP-binding cassette, sub-family B (MDR/TAP), member ... 31 1.9
gi|9955966 ATP-binding cassette, sub-family B (MDR/TAP), member ... 31 1.9
gi|45243524 ATP-binding cassette, sub-family B (MDR/TAP), member... 31 1.9
gi|224586777 WD repeat domain 8 [Homo sapiens] 31 1.9
gi|62912470 leucine-rich repeat-containing G protein-coupled rec... 31 1.9
gi|59806361 hypothetical protein LOC387104 [Homo sapiens] 30 2.5
gi|21389473 transmembrane protein 42 [Homo sapiens] 30 2.5
gi|110681708 zinc finger protein 579 [Homo sapiens] 30 2.5
>gi|47827222 solute carrier family 35, member E4 [Homo sapiens]
Length = 350
Score = 699 bits (1804), Expect = 0.0
Identities = 350/350 (100%), Positives = 350/350 (100%)
Query: 1 MCRCPPEHHDGRMTSAEVGAAAGGAQAAGPPEWPPGSPQALRQPGRARVAMAALVWLLAG 60
MCRCPPEHHDGRMTSAEVGAAAGGAQAAGPPEWPPGSPQALRQPGRARVAMAALVWLLAG
Sbjct: 1 MCRCPPEHHDGRMTSAEVGAAAGGAQAAGPPEWPPGSPQALRQPGRARVAMAALVWLLAG 60
Query: 61 ASMSSLNKWIFTVHGFGRPLLLSALHMLVAALACHRGARRPMPGGTRCRVLLLSLTFGTS 120
ASMSSLNKWIFTVHGFGRPLLLSALHMLVAALACHRGARRPMPGGTRCRVLLLSLTFGTS
Sbjct: 61 ASMSSLNKWIFTVHGFGRPLLLSALHMLVAALACHRGARRPMPGGTRCRVLLLSLTFGTS 120
Query: 121 MACGNVGLRAVPLDLAQLVTTTTPLFTLALSALLLGRRHHPLQLAAMGPLCLGAACSLAG 180
MACGNVGLRAVPLDLAQLVTTTTPLFTLALSALLLGRRHHPLQLAAMGPLCLGAACSLAG
Sbjct: 121 MACGNVGLRAVPLDLAQLVTTTTPLFTLALSALLLGRRHHPLQLAAMGPLCLGAACSLAG 180
Query: 181 EFRTPPTGCGFLLAATCLRGLKSVQQSALLQEERLDAVTLLYATSLPSFCLLAGAALVLE 240
EFRTPPTGCGFLLAATCLRGLKSVQQSALLQEERLDAVTLLYATSLPSFCLLAGAALVLE
Sbjct: 181 EFRTPPTGCGFLLAATCLRGLKSVQQSALLQEERLDAVTLLYATSLPSFCLLAGAALVLE 240
Query: 241 AGVAPPPTAGDSRLWACILLSCLLSVLYNLASFSLLALTSALTVHVLGNLTVVGNLILSR 300
AGVAPPPTAGDSRLWACILLSCLLSVLYNLASFSLLALTSALTVHVLGNLTVVGNLILSR
Sbjct: 241 AGVAPPPTAGDSRLWACILLSCLLSVLYNLASFSLLALTSALTVHVLGNLTVVGNLILSR 300
Query: 301 LLFGSRLSALSYVGIALTLSGMFLYHNCEFVASWAARRGLWRRDQPSKGL 350
LLFGSRLSALSYVGIALTLSGMFLYHNCEFVASWAARRGLWRRDQPSKGL
Sbjct: 301 LLFGSRLSALSYVGIALTLSGMFLYHNCEFVASWAARRGLWRRDQPSKGL 350
>gi|160707905 similar to solute carrier family 35, member E2 [Homo
sapiens]
Length = 405
Score = 75.5 bits (184), Expect = 7e-14
Identities = 78/315 (24%), Positives = 138/315 (43%), Gaps = 23/315 (7%)
Query: 47 ARVAMAALVWLLAGASMSSLNKWIFTVHGFGRPLLLSALHML-VAALAC----------H 95
+R + +W LNK+I ++ G G P +L A+ ML + C
Sbjct: 73 SRALLYLTLWFFFSFCTLFLNKYILSLLG-GEPSMLGAVQMLSTTVIGCVKTLVPCCLYQ 131
Query: 96 RGARRPMPGGTRCRVLLLSLTFGTSMACGNVGLRAVPLDLAQLVTTTTPLFTLALSALLL 155
AR P +L + L ++ G V L+ V + A+ V ++ P+FT+ +S ++L
Sbjct: 132 HKARLSYPPNFLMTMLFVGLMRFATVVLGLVSLKNVAVSFAETVKSSAPIFTVIMSRMIL 191
Query: 156 GRRHHPLQLAAMGPLCLGAACSLAGEFRTPPTGCGFLLAATCLRGLKSVQQSALLQEE-- 213
G L ++ P+ G A A E G L+ + L++V LL +
Sbjct: 192 GEYTGLLVNLSLIPVMGGLALCTATEISFNVLGFSAALSTNIMDCLQNVFSKKLLSGDKY 251
Query: 214 RLDAVTLLYATSLPSFCLLAGAAL----VLEAGVAPPPTAGDSRLWACILLSCLLSVLYN 269
R A L + TS + +L A + V G + + + + +L +L L +
Sbjct: 252 RFSAPELQFYTSAAAVAMLVPARVFFTDVPVIGRSGKSFSYNQDVVLLLLTDGVLFHLQS 311
Query: 270 LASFSLLALTSALTVHVLGNLTVVGNLILSRLLFGSRLSALSYVGIALTLSGMFLY---- 325
+ +++L+ S +T V + ++ LS ++FG+++++LS VG AL G+ LY
Sbjct: 312 VTAYALMGKISPVTFSVASTVKHALSIWLSVIVFGNKITSLSAVGTALVTVGVLLYNKAR 371
Query: 326 -HNCEFVASWAARRG 339
H E + S AA G
Sbjct: 372 QHQQEALQSLAAATG 386
>gi|56699411 solute carrier family 35, member E2 [Homo sapiens]
Length = 313
Score = 66.2 bits (160), Expect = 4e-11
Identities = 75/316 (23%), Positives = 131/316 (41%), Gaps = 24/316 (7%)
Query: 42 RQPGRARVAMAALVWLLAGASMSSLNKWIFTVHGFGRPLLLSALHMLVAALA---CHR-- 96
R G R+A L LL + LNKWI+ HGF + L+ +H +V L C +
Sbjct: 7 RVRGHWRIAAGLLFNLLVSICIVFLNKWIYVYHGFPN-MSLTLVHFVVTWLGLYICQKLD 65
Query: 97 -GARRPMPGGTRCRVLLLSLTFGTSMACGNVGLRAVPLDLAQLVTTTTPLFTLALSALLL 155
A + +P R+LLL+L+F + N+ L+ + QL T +A+
Sbjct: 66 IFAPKSLPPS---RLLLLALSFCGFVVFTNLSLQNNTIGTYQLAKAMTTPVIIAIQTFCY 122
Query: 156 GRRHHPLQLAAMGPLCLGAACSLAGEFRTPPTGCGFLLAATCLRGLKSVQQSALLQEERL 215
+ + P+ LG + + + G F + L V A E ++
Sbjct: 123 QKTFSTRIQLTLIPITLGVILNSYYDVKFNFLGMVFAALGVLVTSLYQVWVGAKQHELQV 182
Query: 216 DAVTLLYATSLPSFCLLAGAALVLEAGVAPPPTAGDSRLWA--------CILLSCLLSVL 267
+++ LLY + S +L A E P G+ ++ +LLS +++ +
Sbjct: 183 NSMQLLYYQAPMSSAMLLVAVPFFE------PVFGEGGIFGPWSVSALLMVLLSGVIAFM 236
Query: 268 YNLASFSLLALTSALTVHVLGNLTVVGNLILSRLLFGSRLSALSYVGIALTLSGMFLYHN 327
NL+ + ++ TS +T ++ G+ L +LF LS +GI TL G+ Y +
Sbjct: 237 VNLSIYWIIGNTSPVTYNMFGHFKFCITLFGGYVLFKDPLSINQALGILCTLFGILAYTH 296
Query: 328 CEFVASWAARRGLWRR 343
+ +R L +R
Sbjct: 297 FKLSEQEGSRSKLAQR 312
>gi|164607128 solute carrier family 35, member E1 [Homo sapiens]
Length = 410
Score = 66.2 bits (160), Expect = 4e-11
Identities = 80/353 (22%), Positives = 146/353 (41%), Gaps = 41/353 (11%)
Query: 20 AAAGGAQAAGPPEWPPGSPQALRQPGRARVAMAALVWLLAGASMSSLNKWIFTVHGFGRP 79
AA G AG P S A ARVA L+W A + +NK I + F P
Sbjct: 4 AAVGAGHGAGGPGAASSSGGAREG---ARVAALCLLWYALSAGGNVVNKVILSAFPF--P 58
Query: 80 LLLSALHMLVAALACHRGARR-------------PMPGGTRCRVL--------LLSLTFG 118
+ +S H+L R P P + +L +L L FG
Sbjct: 59 VTVSLCHILALCAGLPPLLRAWRVPPAPPVSGPGPSPHPSSGPLLPPRFYPRYVLPLAFG 118
Query: 119 TSMAC--GNVGLRAVPLDLAQLVTTTTPLFTLALSALLLGRRHHPLQLAAMGPLCLGAAC 176
A +V + VP+ A V T P++ + LS +++ + ++ P+ G
Sbjct: 119 KYFASVSAHVSIWKVPVSYAHTVKATMPIWVVLLSRIIMKEKQSTKVYLSLIPIISGVLL 178
Query: 177 SLAGEFRTPPTGCGFLLAATCLRGLKSVQQSALLQEERLDAVTLLYATS-------LPSF 229
+ E G LAAT L+++ +L++ R+ + LL +P++
Sbjct: 179 ATVTELSFDMWGLVSALAATLCFSLQNIFSKKVLRDSRIHHLRLLNILGCHAVFFMIPTW 238
Query: 230 CLLAGAALVLEAGVAPPPTAGDSRLWACILL--SCLLSVLYNLASFSLLALTSALTVHVL 287
L+ +A ++ + + T W +LL S + N+ +FS+L L S L+ V
Sbjct: 239 VLVDLSAFLVSSDL----TYVYQWPWTLLLLAVSGFCNFAQNVIAFSILNLVSPLSYSVA 294
Query: 288 GNLTVVGNLILSRLLFGSRLSALSYVGIALTLSGMFLYHNCEFVASWAARRGL 340
+ + +S ++ + +++ + +G+ + G+FLY+ ++ A+ AR+ L
Sbjct: 295 NATKRIMVITVSLIMLRNPVTSTNVLGMMTAILGVFLYNKTKYDANQQARKHL 347
>gi|223029426 solute carrier family 35, member D2 [Homo sapiens]
Length = 337
Score = 51.2 bits (121), Expect = 1e-06
Identities = 65/318 (20%), Positives = 121/318 (38%), Gaps = 21/318 (6%)
Query: 21 AAGGAQAAGPPEWPPGSPQALRQPGRARVAMAALVWLLAGASMSSLNKWIFTVHGFGRPL 80
A G A+A G G P A R P R ++AL + + +NK + T +GF P+
Sbjct: 3 AGGQAEAEGAG----GEPGAARLPSRVARLLSALFYGTCSFLIVLVNKALLTTYGFPSPI 58
Query: 81 LLSALHMLVAALACHRGARRPM---PGGTR---CRVLLLSLTFGTSMACGNVGLRAVPLD 134
L M + + + P + ++ L L + + G + L
Sbjct: 59 FLGIGQMAATIMILYVSKLNKIIHFPDFDKKIPVKLFPLPLLYVGNHISGLSSTSKLSLP 118
Query: 135 LAQLVTTTTPLFTLALSALLLGRRHHPLQLAAMGPLCLGAACSLAGEFRTPPTGCGFLLA 194
+ ++ T TL L ++LG+++ + ++ + LGA + + G F+
Sbjct: 119 MFTVLRKFTIPLTLLLETIILGKQYSLNIILSVFAIILGAFIAAGSDLAFNLEGYIFVFL 178
Query: 195 ATCLRGLKSVQQSALLQEERLDAVTLLYATSLPSFCLLAGAALVLEAGVAPPPTAGDSRL 254
V + + L +L+ + C + L++ A +
Sbjct: 179 NDIFTAANGVYTKQKMDPKELGKYGVLFYNA----CFMIIPTLIISVSTGDLQQATEFNQ 234
Query: 255 WACI------LLSCLLSVLYNLASFSLLALTSALTVHVLGNLTVVGNLILSRLLFGSRL- 307
W + LLSC L L ++ SALT V+G + V + L+ G +
Sbjct: 235 WKNVVFILQFLLSCFLGFLLMYSTVLCSYYNSALTTAVVGAIKNVSVAYIGILIGGDYIF 294
Query: 308 SALSYVGIALTLSGMFLY 325
S L++VG+ + ++G Y
Sbjct: 295 SLLNFVGLNICMAGGLRY 312
>gi|33469137 solute carrier family 35, member E2 [Homo sapiens]
Length = 266
Score = 42.4 bits (98), Expect = 6e-04
Identities = 31/121 (25%), Positives = 54/121 (44%), Gaps = 12/121 (9%)
Query: 47 ARVAMAALVWLLAGASMSSLNKWIFTVHGFGRPLLLSALHML-VAALAC----------H 95
+R + +W LNK+I ++ G G P +L A+ ML + C
Sbjct: 73 SRALLYLTLWFFFSFCTLFLNKYILSLLG-GEPSMLGAVQMLSTTVIGCVKTLVPCCLYQ 131
Query: 96 RGARRPMPGGTRCRVLLLSLTFGTSMACGNVGLRAVPLDLAQLVTTTTPLFTLALSALLL 155
AR P +L + L ++ G V L+ V + A+ V ++ P+FT+ +S ++L
Sbjct: 132 HKARLSYPPNFLMTMLFVGLMRFATVVLGLVSLKNVAVSFAETVKSSAPIFTVIMSRMIL 191
Query: 156 G 156
G
Sbjct: 192 G 192
>gi|18087849 solute carrier family 35, member A4 [Homo sapiens]
Length = 324
Score = 39.3 bits (90), Expect = 0.005
Identities = 76/318 (23%), Positives = 116/318 (36%), Gaps = 44/318 (13%)
Query: 45 GRARVAMAALVWLLAGASMSSLNKWIFTVHGFGR---------------PLLLSALHMLV 89
GR R A L+ LL+ A + + H GR LLL A +LV
Sbjct: 12 GRPRQARWTLMLLLSTAMYGAHAPLLALCHVDGRVPFRPSSAVLLTELTKLLLCAFSLLV 71
Query: 90 AALACHRGARRPMPGGTRCRVLLLSLTFGTSMACGNVGLRAVPLDLAQLVTTTTPLFTLA 149
A +G P P L +L +G + R + Q+++ T
Sbjct: 72 GWQAWPQG---PPPWRQAAPFALSALLYGANNNLVIYLQRYMDPSTYQVLSNLKIGSTAV 128
Query: 150 LSALLLGRRHHPLQLAAMGPLCLGAACSLAGEFRTP---------------------PTG 188
L L L R Q A+ L AC AG + P P G
Sbjct: 129 LYCLCLRHRLSVRQGLALLLLMAAGACYAAGGLQVPGNTLPSPPPAAAASPMPLHITPLG 188
Query: 189 CGFLLAATCLRGLKSVQQSALLQEERLDAVTLLYATSLPSFCLLAGAALVLEAGVAPPPT 248
L+ + GL SV L++ +RL L L +F +L L G P
Sbjct: 189 LLLLILYCLISGLSSVYTELLMKRQRLPLA--LQNLFLYTFGVLLNLGLHAGGGSGPGLL 246
Query: 249 AGDSRLWACILLSCLLSVLYNLASFSLLALTSALTVHVLGNLTVVGNLILSRLLFGSRLS 308
G S A ++LS L L +++ S++T + + ++V N +LS +L +L+
Sbjct: 247 EGFSGWAALVVLS---QALNGLLMSAVMKHGSSITRLFVVSCSLVVNAVLSAVLLRLQLT 303
Query: 309 ALSYVGIALTLSGMFLYH 326
A ++ L M LY+
Sbjct: 304 AAFFLATLLIGLAMRLYY 321
>gi|14249528 solute carrier family 35, member B4 [Homo sapiens]
Length = 331
Score = 35.0 bits (79), Expect = 0.10
Identities = 29/107 (27%), Positives = 53/107 (49%), Gaps = 9/107 (8%)
Query: 229 FCLLAGAALVLEAGVAPPPTAGDSRLWACIL-LSCLLSVLYNLASFSLLALTSALTVHVL 287
F +A + EA + P A R +A ++ + +SV+ N A L L A+ +H++
Sbjct: 40 FLFIAVEGFLFEADLGRKPPAIPIRYYAIMVTMFFTVSVVNNYA----LNLNIAMPLHMI 95
Query: 288 GNL-TVVGNLILSRLLFGSRLSALSYVGIALTLSGMFLYHNCEFVAS 333
+++ N+IL ++ R S Y IAL G+F+ C F+++
Sbjct: 96 FRSGSLIANMILGIIILKKRYSIFKYTSIALVSVGIFI---CTFMSA 139
Score = 28.9 bits (63), Expect = 7.2
Identities = 33/148 (22%), Positives = 60/148 (40%), Gaps = 10/148 (6%)
Query: 188 GCGFLLAATCLRGLKSVQQSALLQ---EERLDAVTLLYATSLPSFCLLAG-----AALVL 239
G G L A + + Q L + + +A+ +A LP F LA A L
Sbjct: 163 GIGALTFALLMSARMGIFQETLYKRFGKHSKEALFYNHALPLPGFVFLASDIYDHAVLFN 222
Query: 240 EAGVAPPPTAGDSR--LWACILLSCLLSVLYNLASFSLLALTSALTVHVLGNLTVVGNLI 297
++ + P G + +W +L++ + + F L ++LTV ++ L +LI
Sbjct: 223 KSELYEIPVIGVTLPIMWFYLLMNIITQYVCIRGVFILTTECASLTVTLVVTLRKFVSLI 282
Query: 298 LSRLLFGSRLSALSYVGIALTLSGMFLY 325
S L F + + ++G G +Y
Sbjct: 283 FSILYFQNPFTLWHWLGTLFVFIGTLMY 310
>gi|14028875 solute carrier family 35 (UDP-glucuronic
acid/UDP-N-acetylgalactosamine dual transporter), member
D1 [Homo sapiens]
Length = 355
Score = 33.9 bits (76), Expect = 0.22
Identities = 46/226 (20%), Positives = 91/226 (40%), Gaps = 18/226 (7%)
Query: 115 LTFGTSMACGNVGLRAVPLDLAQLVTTTTPLFTLALSALLLGRRHHPLQLAAMGPLCLGA 174
L FG + G + + L + ++ + LFT+ +LL + + + +GA
Sbjct: 115 LYFGNQIT-GLFSTKKLNLPMFTVLRRFSILFTMFAEGVLLKKTFSWGIKMTVFAMIIGA 173
Query: 175 ACSLAGEFRTPPTGCGFLLAATCLRGLKSVQQSALLQEERLDAVTLLYATSLPSFCLLAG 234
+ + + G F+L L L + L LLY +L F +L
Sbjct: 174 FVAASSDLAFDLEGYAFILINDVLTAANGAYVKQKLDSKELGKYGLLYYNAL--FMILPT 231
Query: 235 AALVLEAGVAPPPTAGDSRLWACIL------LSCLLSVLYNLASFSLLALTSALTVHVLG 288
A+ G A + WA L LSC++ + A+ SALT ++G
Sbjct: 232 LAIAYFTGDAQKAVEFEG--WADTLFLLQFTLSCVMGFILMYATVLCTQYNSALTTTIVG 289
Query: 289 NLTVVGNLILS--RLLFGSR--LSALSYVGIALTLSGMFLYHNCEF 330
+ N++++ ++FG + +++G+ ++++G +Y F
Sbjct: 290 ---CIKNILITYIGMVFGGDYIFTWTNFIGLNISIAGSLVYSYITF 332
>gi|239046743 Nedd4 family interacting protein 2 isoform 2 [Homo
sapiens]
Length = 316
Score = 32.7 bits (73), Expect = 0.50
Identities = 23/59 (38%), Positives = 26/59 (44%), Gaps = 2/59 (3%)
Query: 3 RCPPEHHDGRMTSAEVGAAAGGAQAAGPPEWPPGSPQALRQPGRARVAMAALVWLLAGA 61
R PE G T+AEV AAA GA G E PPG GR A + + GA
Sbjct: 21 RGAPELLRGTATNAEVSAAAAGA--TGSEELPPGDRGCRNGGGRGPAATTSSTGVAVGA 77
>gi|239046738 Nedd4 family interacting protein 2 isoform 1 [Homo
sapiens]
Length = 336
Score = 32.7 bits (73), Expect = 0.50
Identities = 23/59 (38%), Positives = 26/59 (44%), Gaps = 2/59 (3%)
Query: 3 RCPPEHHDGRMTSAEVGAAAGGAQAAGPPEWPPGSPQALRQPGRARVAMAALVWLLAGA 61
R PE G T+AEV AAA GA G E PPG GR A + + GA
Sbjct: 21 RGAPELLRGTATNAEVSAAAAGA--TGSEELPPGDRGCRNGGGRGPAATTSSTGVAVGA 77
>gi|30026034 solute carrier family 35, member B2 [Homo sapiens]
Length = 432
Score = 32.7 bits (73), Expect = 0.50
Identities = 55/255 (21%), Positives = 100/255 (39%), Gaps = 14/255 (5%)
Query: 80 LLLSALHMLVAALACHRGARRPMPGGTRCRVLLLSLTFGTSMACGNVGLRAVPLDLAQLV 139
L+ L ++VA L+C ++P G R SL+ S C L+ V L
Sbjct: 157 LMNRVLALIVAGLSCVL-CKQPRHGAPMYRYSFASLSNVLSSWCQYEALKFVSFPTQVLA 215
Query: 140 TTTTPLFTLALSALLLGRRHHPLQLAAMGPLCLGAACSLAG---EFRTPP--TGCGFLLA 194
+ + + + L+ R + + + +G + L E R+ P T G +L
Sbjct: 216 KASKVIPVMLMGKLVSRRSYEHWEYLTATLISIGVSMFLLSSGPEPRSSPATTLSGLILL 275
Query: 195 ATCLR--GLKSVQQSALLQEERLDAVTLLYATSLPSFCLLAGAALVLEAGVAPPPT---A 249
A + S Q AL ++ +V +++ + S G+ +LE G T
Sbjct: 276 AGYIAFDSFTSNWQDALFAY-KMSSVQMMFGVNFFSCLFTVGS--LLEQGALLEGTRFMG 332
Query: 250 GDSRLWACILLSCLLSVLYNLASFSLLALTSALTVHVLGNLTVVGNLILSRLLFGSRLSA 309
S A LL + S L F + A ++ L ++LS LL+G ++
Sbjct: 333 RHSEFAAHALLLSICSACGQLFIFYTIGQFGAAVFTIIMTLRQAFAILLSCLLYGHTVTV 392
Query: 310 LSYVGIALTLSGMFL 324
+ +G+A+ + + L
Sbjct: 393 VGGLGVAVVFAALLL 407
>gi|4502349 UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase 3
[Homo sapiens]
Length = 393
Score = 31.2 bits (69), Expect = 1.4
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 15 SAEVGAAAGGAQAAGPPEWPPGSPQALRQ 43
+A++G G +A P +PPGS QA RQ
Sbjct: 339 TADIGTDPRGPRAPSGPRYPPGSSQAFRQ 367
>gi|19924099 synapsin I isoform Ia [Homo sapiens]
Length = 705
Score = 31.2 bits (69), Expect = 1.4
Identities = 14/29 (48%), Positives = 16/29 (55%)
Query: 19 GAAAGGAQAAGPPEWPPGSPQALRQPGRA 47
GA GG Q GPP+ PPG RQ +A
Sbjct: 579 GAPPGGQQRQGPPQKPPGPAGPTRQASQA 607
>gi|19924097 synapsin I isoform Ib [Homo sapiens]
Length = 669
Score = 31.2 bits (69), Expect = 1.4
Identities = 14/29 (48%), Positives = 16/29 (55%)
Query: 19 GAAAGGAQAAGPPEWPPGSPQALRQPGRA 47
GA GG Q GPP+ PPG RQ +A
Sbjct: 579 GAPPGGQQRQGPPQKPPGPAGPTRQASQA 607
>gi|27262645 ataxin 2 related protein isoform B [Homo sapiens]
Length = 1062
Score = 31.2 bits (69), Expect = 1.4
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 5 PPEHHDGRMTSAEVGAAAGGAQAAGPPEWP 34
PP+ H R +A +G+A G + GPP+ P
Sbjct: 83 PPQQHQERPGAAAIGSARGQSTGKGPPQSP 112
>gi|27262653 ataxin 2 related protein isoform E [Homo sapiens]
Length = 1044
Score = 31.2 bits (69), Expect = 1.4
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 5 PPEHHDGRMTSAEVGAAAGGAQAAGPPEWP 34
PP+ H R +A +G+A G + GPP+ P
Sbjct: 83 PPQQHQERPGAAAIGSARGQSTGKGPPQSP 112
>gi|27262649 ataxin 2 related protein isoform C [Homo sapiens]
Length = 1097
Score = 31.2 bits (69), Expect = 1.4
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 5 PPEHHDGRMTSAEVGAAAGGAQAAGPPEWP 34
PP+ H R +A +G+A G + GPP+ P
Sbjct: 83 PPQQHQERPGAAAIGSARGQSTGKGPPQSP 112
>gi|27262647 ataxin 2 related protein isoform A [Homo sapiens]
Length = 1075
Score = 31.2 bits (69), Expect = 1.4
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 5 PPEHHDGRMTSAEVGAAAGGAQAAGPPEWP 34
PP+ H R +A +G+A G + GPP+ P
Sbjct: 83 PPQQHQERPGAAAIGSARGQSTGKGPPQSP 112
>gi|27262651 ataxin 2 related protein isoform D [Homo sapiens]
Length = 1044
Score = 31.2 bits (69), Expect = 1.4
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 5 PPEHHDGRMTSAEVGAAAGGAQAAGPPEWP 34
PP+ H R +A +G+A G + GPP+ P
Sbjct: 83 PPQQHQERPGAAAIGSARGQSTGKGPPQSP 112
>gi|170650694 centaurin, gamma 1 isoform PIKE-L [Homo sapiens]
Length = 1192
Score = 30.8 bits (68), Expect = 1.9
Identities = 14/29 (48%), Positives = 17/29 (58%)
Query: 20 AAAGGAQAAGPPEWPPGSPQALRQPGRAR 48
AAAG A A G PGSP+ +PG+ R
Sbjct: 37 AAAGAAGARGSETGDPGSPRGAEEPGKKR 65
>gi|239747126 PREDICTED: hypothetical protein XP_002343919 [Homo
sapiens]
Length = 185
Score = 30.8 bits (68), Expect = 1.9
Identities = 22/68 (32%), Positives = 30/68 (44%), Gaps = 1/68 (1%)
Query: 230 CLLAGAALVLEAGVAPPPTAGDSRLWACILLSCLLSVLYNLASFSLLALTSALTVHVLGN 289
CLL G A L P PT W C+ + C VL S +LAL L + +L
Sbjct: 45 CLLPGLAFALP-WPDPRPTESMKWPWTCLAILCPCPVLSPPCSGPVLALALLLVLPLLWP 103
Query: 290 LTVVGNLI 297
+V G+ +
Sbjct: 104 CSVFGHAL 111
>gi|9955968 ATP-binding cassette, sub-family B (MDR/TAP), member 9
isoform 2 [Homo sapiens]
Length = 723
Score = 30.8 bits (68), Expect = 1.9
Identities = 23/65 (35%), Positives = 29/65 (44%), Gaps = 7/65 (10%)
Query: 216 DAVTLLYATSLPSFCLLAGAALVLEAGVAPPPTAGDSRL---WACILLSCLLSVLYNLAS 272
D+V L+A L CLL GA + GVA G RL W I L CL +Y +
Sbjct: 45 DSVLDLWAACLYRSCLLLGATI----GVAKNSALGPRRLRASWLVITLVCLFVGIYAMVK 100
Query: 273 FSLLA 277
L +
Sbjct: 101 LLLFS 105
>gi|9955966 ATP-binding cassette, sub-family B (MDR/TAP), member 9
isoform 1 [Homo sapiens]
Length = 766
Score = 30.8 bits (68), Expect = 1.9
Identities = 23/65 (35%), Positives = 29/65 (44%), Gaps = 7/65 (10%)
Query: 216 DAVTLLYATSLPSFCLLAGAALVLEAGVAPPPTAGDSRL---WACILLSCLLSVLYNLAS 272
D+V L+A L CLL GA + GVA G RL W I L CL +Y +
Sbjct: 45 DSVLDLWAACLYRSCLLLGATI----GVAKNSALGPRRLRASWLVITLVCLFVGIYAMVK 100
Query: 273 FSLLA 277
L +
Sbjct: 101 LLLFS 105
>gi|45243524 ATP-binding cassette, sub-family B (MDR/TAP), member 9
isoform 1 [Homo sapiens]
Length = 766
Score = 30.8 bits (68), Expect = 1.9
Identities = 23/65 (35%), Positives = 29/65 (44%), Gaps = 7/65 (10%)
Query: 216 DAVTLLYATSLPSFCLLAGAALVLEAGVAPPPTAGDSRL---WACILLSCLLSVLYNLAS 272
D+V L+A L CLL GA + GVA G RL W I L CL +Y +
Sbjct: 45 DSVLDLWAACLYRSCLLLGATI----GVAKNSALGPRRLRASWLVITLVCLFVGIYAMVK 100
Query: 273 FSLLA 277
L +
Sbjct: 101 LLLFS 105
>gi|224586777 WD repeat domain 8 [Homo sapiens]
Length = 460
Score = 30.8 bits (68), Expect = 1.9
Identities = 13/36 (36%), Positives = 21/36 (58%)
Query: 33 WPPGSPQALRQPGRARVAMAALVWLLAGASMSSLNK 68
W P +++ PG A+ +L W L+G SM+ L+K
Sbjct: 400 WSPAGCMSVQVPGEGDFAVLSLCWHLSGDSMALLSK 435
>gi|62912470 leucine-rich repeat-containing G protein-coupled
receptor 6 isoform 1 [Homo sapiens]
Length = 967
Score = 30.8 bits (68), Expect = 1.9
Identities = 30/83 (36%), Positives = 36/83 (43%), Gaps = 5/83 (6%)
Query: 82 LSALHMLVAALACHR--GARRPMPGGTRCRVLLLSLTFGTSMA--CGNVGLRAVPLDLAQ 137
L AL + A A R GA +P PG T C G ++ C +GL AVP DL
Sbjct: 7 LRALWLCAALCASRRAGGAPQPGPGPTACPAPCHCQEDGIMLSADCSELGLSAVPGDLDP 66
Query: 138 LVTTTTPLFTLALSALLLGRRHH 160
L T L L+ L G HH
Sbjct: 67 L-TAYLDLSMNNLTELQPGLFHH 88
>gi|59806361 hypothetical protein LOC387104 [Homo sapiens]
Length = 947
Score = 30.4 bits (67), Expect = 2.5
Identities = 18/45 (40%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Query: 10 DGRMTSAEVGAAAGGAQAAGPPEWPPGSPQALRQPGRARVAMAAL 54
+G SAE A+ GG QAA PP P PQ L++ + M L
Sbjct: 316 EGPQQSAEGSASGGGMQAAAPPSSQP-HPQQLQEQEEMQEEMEKL 359
>gi|21389473 transmembrane protein 42 [Homo sapiens]
Length = 159
Score = 30.4 bits (67), Expect = 2.5
Identities = 25/102 (24%), Positives = 46/102 (45%), Gaps = 5/102 (4%)
Query: 230 CLLAGAALVLEAGVAPPPTAGDSRLWACIL----LSCLLSVLYNLASFSL-LALTSALTV 284
CL AGA L A A + + C+L ++ S+++ S L +++SA+
Sbjct: 43 CLCAGAFGALAAASAKLAFGSEVSMGLCVLGIIVMASTNSLMWTFFSRGLSFSMSSAIAS 102
Query: 285 HVLGNLTVVGNLILSRLLFGSRLSALSYVGIALTLSGMFLYH 326
+ ++ + L +L+G L + G+ L L G+ L H
Sbjct: 103 VTVTFSNILSSAFLGYVLYGECQEVLWWGGVFLILCGLTLIH 144
>gi|110681708 zinc finger protein 579 [Homo sapiens]
Length = 562
Score = 30.4 bits (67), Expect = 2.5
Identities = 15/34 (44%), Positives = 16/34 (47%)
Query: 14 TSAEVGAAAGGAQAAGPPEWPPGSPQALRQPGRA 47
T+A GA A AA P WP G P L P A
Sbjct: 155 TTAAAGATEEEAVAAWPETWPAGEPSTLAAPTSA 188
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.325 0.137 0.431
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,524,079
Number of Sequences: 37866
Number of extensions: 632242
Number of successful extensions: 3680
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 3624
Number of HSP's gapped (non-prelim): 67
length of query: 350
length of database: 18,247,518
effective HSP length: 103
effective length of query: 247
effective length of database: 14,347,320
effective search space: 3543788040
effective search space used: 3543788040
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.