Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: SLC35E4 Sequence: fasta or formatted (350aa) NCBI GI: 47827222
Description:

solute carrier family 35, member E4

Referenced in:

Solute Carrier Families

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            14.0         49           3
 C cysteine            3.7         13           1
 D aspartate           1.4          5           1
 E glutamate           2.3          8           2
 F phenylalanine       3.1         11           1
 G glycine             9.4         33           2
 H histidine           2.6          9           2
 I isoleucine          1.1          4           1
 K lysine              0.9          3           1
 L leucine            19.4         68           3
 M methionine          2.6          9           1
 N asparagine          1.7          6           1
 P proline             6.3         22           3
 Q glutamine           2.6          9           2
 R arginine            6.9         24           2
 S serine              7.7         27           2
 T threonine           5.7         20           4
 V valine              5.7         20           2
 W tryptophan          1.7          6           1
 Y tyrosine            1.1          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   solute carrier family 35, member E4 
LOC728661             0.074   similar to solute carrier family 35, member E2 [Hom...
SLC35E3               0.061   solute carrier family 35, member E2 
SLC35E1               0.061   solute carrier family 35, member E1 
SLC35D2               0.039   solute carrier family 35, member D2 
SLC35E2               0.025   solute carrier family 35, member E2 
SLC35A4               0.021   solute carrier family 35, member A4 
SLC35B4               0.015   solute carrier family 35, member B4 
SLC35D1               0.013   solute carrier family 35 (UDP-glucuronic acid/UDP-N-...
NDFIP2                0.012   Nedd4 family interacting protein 2 isoform 2 
NDFIP2                0.012   Nedd4 family interacting protein 2 isoform 1 
SLC35B2               0.012   solute carrier family 35, member B2 
B4GALT3               0.009   UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase 3 ...
SYN1                  0.009   synapsin I isoform Ia 
SYN1                  0.009   synapsin I isoform Ib 
ATXN2L                0.009   ataxin 2 related protein isoform B 
ATXN2L                0.009   ataxin 2 related protein isoform E 
ATXN2L                0.009   ataxin 2 related protein isoform C 
ATXN2L                0.009   ataxin 2 related protein isoform A 
ATXN2L                0.009   ataxin 2 related protein isoform D 
AGAP2                 0.009   centaurin, gamma 1 isoform PIKE-L 
LOC100289460          0.009   PREDICTED: hypothetical protein XP_002343919 
ABCB9                 0.009   ATP-binding cassette, sub-family B (MDR/TAP), member ...
ABCB9                 0.009   ATP-binding cassette, sub-family B (MDR/TAP), member ...
ABCB9                 0.009   ATP-binding cassette, sub-family B (MDR/TAP), member...
WDR8                  0.009   WD repeat domain 8 
LGR6                  0.009   leucine-rich repeat-containing G protein-coupled rec...
C6orf174              0.007   hypothetical protein LOC387104 
TMEM42                0.007   transmembrane protein 42 
ZNF579                0.007   zinc finger protein 579 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press