Guide to the Human Genome
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Name: SLC35D2 Sequence: fasta or formatted (337aa) NCBI GI: 223029426
Description:

solute carrier family 35, member D2

Referenced in:

Solute Carrier Families

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.4         25           2
 C cysteine            1.8          6           1
 D aspartate           2.4          8           1
 E glutamate           2.7          9           2
 F phenylalanine       7.4         25           1
 G glycine             8.6         29           2
 H histidine           0.6          2           1
 I isoleucine          9.2         31           2
 K lysine              5.3         18           2
 L leucine            15.4         52           3
 M methionine          2.4          8           1
 N asparagine          4.5         15           1
 P proline             4.2         14           1
 Q glutamine           2.7          9           2
 R arginine            1.5          5           1
 S serine              7.4         25           2
 T threonine           5.6         19           2
 V valine              6.2         21           2
 W tryptophan          0.3          1           1
 Y tyrosine            4.5         15           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   solute carrier family 35, member D2 
SLC35D1               0.551   solute carrier family 35 (UDP-glucuronic acid/UDP-N-...
SLC35D3               0.083   solute carrier family 35, member D3 
SLC35C1               0.069   GDP-fucose transporter 1 isoform a 
SLC35C1               0.069   GDP-fucose transporter 1 isoform b 
SLC35C1               0.069   GDP-fucose transporter 1 isoform b 
C18orf45              0.061   hypothetical protein LOC85019 
SLC35E3               0.061   solute carrier family 35, member E2 
SLC35C2               0.047   solute carrier family 35, member C2 isoform a 
SLC35C2               0.047   solute carrier family 35, member C2 isoform a 
LOC728661             0.047   similar to solute carrier family 35, member E2 [Hom...
SLC35E4               0.041   solute carrier family 35, member E4 
SLC35C2               0.030   solute carrier family 35, member C2 isoform b 
SLC35F2               0.013   solute carrier family 35, member F2 
SLC35B4               0.013   solute carrier family 35, member B4 
LOC100129924          0.006   PREDICTED: similar to hCG2036949 
LOC100129924          0.006   PREDICTED: similar to hCG2036949 
LOC100129924          0.006   PREDICTED: similar to hCG2036949 
TMEM41B               0.006   transmembrane protein 41B 
TMEM145               0.006   transmembrane protein 145 
CACNA1D               0.006   calcium channel, voltage-dependent, L type, alpha 1D ...
CYSLTR1               0.005   cysteinyl leukotriene receptor 1 
TBC1D2B               0.005   TBC1 domain family, member 2B isoform a 
TBC1D2B               0.005   TBC1 domain family, member 2B isoform b 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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