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Search of human proteins with 4758168
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|4758168 distal-less homeobox 2 [Homo sapiens]
(328 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|4758168 distal-less homeobox 2 [Homo sapiens] 682 0.0
gi|4885187 distal-less homeobox 5 [Homo sapiens] 227 1e-59
gi|4885185 distal-less homeobox 3 [Homo sapiens] 216 2e-56
gi|82659115 distal-less homeobox 6 [Homo sapiens] 142 3e-34
gi|64225290 distal-less homeobox 1 isoform 1 [Homo sapiens] 133 2e-31
gi|20143962 distal-less homeobox 4 isoform a [Homo sapiens] 122 3e-28
gi|20143960 distal-less homeobox 4 isoform b [Homo sapiens] 122 4e-28
gi|239742243 PREDICTED: HPX-153 homeobox [Homo sapiens] 96 3e-20
gi|239753784 PREDICTED: NK1 homeobox 1 [Homo sapiens] 96 6e-20
gi|118582284 msh homeobox 1 [Homo sapiens] 95 1e-19
gi|226437602 NK1 homeobox 2 [Homo sapiens] 92 6e-19
gi|239755439 PREDICTED: NK1 homeobox 2 [Homo sapiens] 92 6e-19
gi|239749920 PREDICTED: NK1 homeobox 2 [Homo sapiens] 92 6e-19
gi|239744223 PREDICTED: NK1 homeobox 2 [Homo sapiens] 92 6e-19
gi|239748344 PREDICTED: NK1 homeobox 1 [Homo sapiens] 88 9e-18
gi|148746211 NK2 transcription factor related, locus 3 [Homo sap... 86 6e-17
gi|210147470 NK2 transcription factor related, locus 6 [Homo sap... 84 1e-16
gi|6633798 BarH-like homeobox 2 [Homo sapiens] 84 2e-16
gi|89257348 homeo box HB9 [Homo sapiens] 81 1e-15
gi|157426823 NK2 homeobox 4 [Homo sapiens] 81 1e-15
gi|24497513 homeobox A3 isoform a [Homo sapiens] 80 2e-15
gi|13562112 homeobox A3 isoform a [Homo sapiens] 80 2e-15
gi|5031761 homeobox A1 isoform a [Homo sapiens] 80 2e-15
gi|27886557 msh homeobox 2 [Homo sapiens] 80 2e-15
gi|24497526 homeobox B1 [Homo sapiens] 79 4e-15
gi|31377777 NK2 homeobox 8 [Homo sapiens] 79 6e-15
gi|147901462 brain specific homeobox [Homo sapiens] 79 6e-15
gi|14149728 BarH-like homeobox 1 [Homo sapiens] 78 9e-15
gi|19923391 homeobox D3 [Homo sapiens] 77 2e-14
gi|153218470 BarH-like homeobox 1 [Homo sapiens] 77 2e-14
>gi|4758168 distal-less homeobox 2 [Homo sapiens]
Length = 328
Score = 682 bits (1761), Expect = 0.0
Identities = 328/328 (100%), Positives = 328/328 (100%)
Query: 1 MTGVFDSLVADMHSTQIAASSTYHQHQQPPSGGGAGPGGNSSSSSSLHKPQESPTLPVST 60
MTGVFDSLVADMHSTQIAASSTYHQHQQPPSGGGAGPGGNSSSSSSLHKPQESPTLPVST
Sbjct: 1 MTGVFDSLVADMHSTQIAASSTYHQHQQPPSGGGAGPGGNSSSSSSLHKPQESPTLPVST 60
Query: 61 ATDSSYYTNQQHPAGGGGGGGSPYAHMGSYQYQASGLNNVPYSAKSSYDLGYTAAYTSYA 120
ATDSSYYTNQQHPAGGGGGGGSPYAHMGSYQYQASGLNNVPYSAKSSYDLGYTAAYTSYA
Sbjct: 61 ATDSSYYTNQQHPAGGGGGGGSPYAHMGSYQYQASGLNNVPYSAKSSYDLGYTAAYTSYA 120
Query: 121 PYGTSSSPANNEPEKEDLEPEIRIVNGKPKKVRKPRTIYSSFQLAALQRRFQKTQYLALP 180
PYGTSSSPANNEPEKEDLEPEIRIVNGKPKKVRKPRTIYSSFQLAALQRRFQKTQYLALP
Sbjct: 121 PYGTSSSPANNEPEKEDLEPEIRIVNGKPKKVRKPRTIYSSFQLAALQRRFQKTQYLALP 180
Query: 181 ERAELAASLGLTQTQVKIWFQNRRSKFKKMWKSGEIPSEQHPGASASPPCASPPVSAPAS 240
ERAELAASLGLTQTQVKIWFQNRRSKFKKMWKSGEIPSEQHPGASASPPCASPPVSAPAS
Sbjct: 181 ERAELAASLGLTQTQVKIWFQNRRSKFKKMWKSGEIPSEQHPGASASPPCASPPVSAPAS 240
Query: 241 WDFGVPQRMAGGGGPGSGGSGAGSSGSSPSSAASAFLGNYPWYHQTSGSASHLQATAPLL 300
WDFGVPQRMAGGGGPGSGGSGAGSSGSSPSSAASAFLGNYPWYHQTSGSASHLQATAPLL
Sbjct: 241 WDFGVPQRMAGGGGPGSGGSGAGSSGSSPSSAASAFLGNYPWYHQTSGSASHLQATAPLL 300
Query: 301 HPTQTPQPHHHHHHHGGGGAPVSAGTIF 328
HPTQTPQPHHHHHHHGGGGAPVSAGTIF
Sbjct: 301 HPTQTPQPHHHHHHHGGGGAPVSAGTIF 328
>gi|4885187 distal-less homeobox 5 [Homo sapiens]
Length = 289
Score = 227 bits (578), Expect = 1e-59
Identities = 148/312 (47%), Positives = 174/312 (55%), Gaps = 42/312 (13%)
Query: 1 MTGVFDSLVADMHSTQIAASSTYHQHQQPPSGGGAGPGGNSSSSSSLHKP-QESPTLPVS 59
MTGVFD V + S A +S+++H P QESPTLP S
Sbjct: 1 MTGVFDRRVPSIRSGDFQAPF--------------------QTSAAMHHPSQESPTLPES 40
Query: 60 TATDSSYYTNQQHPAGGGGGG------GSPYAHMGSYQYQASGLNNVP--YSAKSSYDLG 111
+ATDS YY+ P GG G S + YQYQ G+N Y AK+ D
Sbjct: 41 SATDSDYYS----PTGGAPHGYCSPTSASYGKALNPYQYQYHGVNGSAGSYPAKAYADYS 96
Query: 112 YTAAYTSYAPYGTSSSPANNEPEKEDLEPEIRIVNGKPKKVRKPRTIYSSFQLAALQRRF 171
Y ++Y Y A N+PEKE EPE+R+VNGKPKKVRKPRTIYSSFQLAALQRRF
Sbjct: 97 YASSYHQYGGAYNRVPSATNQPEKEVTEPEVRMVNGKPKKVRKPRTIYSSFQLAALQRRF 156
Query: 172 QKTQYLALPERAELAASLGLTQTQVKIWFQNRRSKFKKMWKSGEIPSEQHPGASASPPCA 231
QKTQYLALPERAELAASLGLTQTQVKIWFQN+RSK KK+ K+GE+P E P +S C
Sbjct: 157 QKTQYLALPERAELAASLGLTQTQVKIWFQNKRSKIKKIMKNGEMPPEHSPSSSDPMACN 216
Query: 232 SPPVSAPASWDFGVPQRMAGGGGPGSGGSGAGSSGSSPSSAASAFLGNYPWYHQTSGSA- 290
SP +PA W+ PQ G S A S+ S A+S + WY + S
Sbjct: 217 SP--QSPAVWE---PQ---GSSRSLSHHPHAHPPTSNQSPASSYLENSASWYTSAASSIN 268
Query: 291 SHLQATAPLLHP 302
SHL L HP
Sbjct: 269 SHLPPPGSLQHP 280
>gi|4885185 distal-less homeobox 3 [Homo sapiens]
Length = 287
Score = 216 bits (551), Expect = 2e-56
Identities = 141/295 (47%), Positives = 170/295 (57%), Gaps = 32/295 (10%)
Query: 42 SSSSSLHK-PQESPTLPVSTATDSSYYTNQQHPAGGGGGGG---SPYAHMGSYQYQASGL 97
SSS S H ++SPTLP S+ TD YY+ QH G G +PY + +Q+ +GL
Sbjct: 17 SSSLSCHAGSKDSPTLPESSVTDLGYYSAPQHDYYSGQPYGQTVNPYTY--HHQFNLNGL 74
Query: 98 NNV-PYSAKSSYDLGYTAAYTSYAPYGTSSSPANNEPE-KEDLEPEIRIVNGKPKKVRKP 155
YS KS Y G A+Y Y Y PA + KE+ E E+R+VNGKPKKVRKP
Sbjct: 75 AGTGAYSPKSEYTYG--ASYRQYGAYREQPLPAQDPVSVKEEPEAEVRMVNGKPKKVRKP 132
Query: 156 RTIYSSFQLAALQRRFQKTQYLALPERAELAASLGLTQTQVKIWFQNRRSKFKKMWKSGE 215
RTIYSS+QLAALQRRFQK QYLALPERAELAA LGLTQTQVKIWFQNRRSKFKK++K+GE
Sbjct: 133 RTIYSSYQLAALQRRFQKAQYLALPERAELAAQLGLTQTQVKIWFQNRRSKFKKLYKNGE 192
Query: 216 IPSEQHPGASASPPCASPPVSAPASWDFGVPQRMAGGGGPGSGGSGAGSSGSSPSSAASA 275
+P E P S S C SPP +PA WD + P S P SA+ +
Sbjct: 193 VPLEHSPNNSDSMACNSPP--SPALWD------TSSHSTPAPARSQL--PPPLPYSASPS 242
Query: 276 FLGN--YPWYHQTSGSASHLQATAPLLHPTQTPQPHHHHHHHGGGGAPVSAGTIF 328
+L + WYH + S HLQ Q PQP HH G P + G ++
Sbjct: 243 YLDDPTNSWYHAQNLSGPHLQ--------QQPPQP--ATLHHASPGPPPNPGAVY 287
>gi|82659115 distal-less homeobox 6 [Homo sapiens]
Length = 265
Score = 142 bits (359), Expect = 3e-34
Identities = 90/186 (48%), Positives = 107/186 (57%), Gaps = 11/186 (5%)
Query: 59 STATDSSYYTNQQHPAGGGGGGGSPYAHMGSYQYQASGLNNVPYSAKSSYDLGYTAAYTS 118
+ A S ++ + QH G SPYA G Y L PY + S + + + S
Sbjct: 52 AAAAGSHHHHHHQHHHHG-----SPYASGGGNSYNHRSLAAYPYMSHSQHSPYLQSYHNS 106
Query: 119 YAPYGTSSSPANNEPEKEDLEPEIRIVNGKPKKVRKPRTIYSSFQLAALQRRFQKTQYLA 178
A T + + EIR NGK KK+RKPRTIYSS QL AL RFQ+TQYLA
Sbjct: 107 SAAAQTRGDDTDQQKTTVIENGEIRF-NGKGKKIRKPRTIYSSLQLQALNHRFQQTQYLA 165
Query: 179 LPERAELAASLGLTQTQVKIWFQNRRSKFKKMWKSGEIPSEQHP--GASASPPCASPPVS 236
LPERAELAASLGLTQTQVKIWFQN+RSKFKK+ K G P E P G++A P SP +
Sbjct: 166 LPERAELAASLGLTQTQVKIWFQNKRSKFKKLLKQGSNPHESDPLQGSAALSP-RSP--A 222
Query: 237 APASWD 242
P WD
Sbjct: 223 LPPVWD 228
Score = 28.9 bits (63), Expect = 6.6
Identities = 9/17 (52%), Positives = 12/17 (70%)
Query: 309 HHHHHHHGGGGAPVSAG 325
HHHHH H G+P ++G
Sbjct: 59 HHHHHQHHHHGSPYASG 75
>gi|64225290 distal-less homeobox 1 isoform 1 [Homo sapiens]
Length = 255
Score = 133 bits (335), Expect = 2e-31
Identities = 96/216 (44%), Positives = 114/216 (52%), Gaps = 30/216 (13%)
Query: 59 STATDSSYYTNQQHPAG-----GGGGGGSPYAHMGSYQYQASGLNNVPYSAKSSYDLGYT 113
S + Y + H AG G S ++ Y Y +N+V A S Y
Sbjct: 33 SPMSHGHYSMHCLHSAGHSQPDGAYSSASSFSRPLGYPY----VNSVSSHASSPY----- 83
Query: 114 AAYTSYAPYGTSSSPANNEPEKEDLEPEIRIV--------NGKPKKVRKPRTIYSSFQLA 165
+S Y S+S A + E + E V NGK KK+RKPRTIYSS QL
Sbjct: 84 --ISSVQSYPGSASLAQSRLEDPGADSEKSTVVEGGEVRFNGKGKKIRKPRTIYSSLQLQ 141
Query: 166 ALQRRFQKTQYLALPERAELAASLGLTQTQVKIWFQNRRSKFKKMWKSGEIPSEQHPGAS 225
AL RRFQ+TQYLALPERAELAASLGLTQTQVKIWFQN+RSKFKK+ K G E A+
Sbjct: 142 ALNRRFQQTQYLALPERAELAASLGLTQTQVKIWFQNKRSKFKKLMKQGGAALEGSALAN 201
Query: 226 ASPPCA-SPPVSAPASWDFGVPQRMAGGGGPGSGGS 260
A SPPV P W+ P +G G G+ GS
Sbjct: 202 GRALSAGSPPV--PPGWN---PNSSSGKGSGGNAGS 232
>gi|20143962 distal-less homeobox 4 isoform a [Homo sapiens]
Length = 240
Score = 122 bits (307), Expect = 3e-28
Identities = 78/165 (47%), Positives = 93/165 (56%), Gaps = 13/165 (7%)
Query: 83 PYAHMGSYQYQASGLNNVPYSAKSSYDLGYTAAYTSYAPYGTSSSP----ANNEPEKEDL 138
PY H+ SY Y P + SY A S G + P A++E +
Sbjct: 50 PYGHLLSYPYTE------PANPGDSYLSCQQPAALSQPLCGPAEHPQELEADSEKPRLSP 103
Query: 139 EPEIRIVNGKPKKVRKPRTIYSSFQLAALQRRFQKTQYLALPERAELAASLGLTQTQVKI 198
EP R KK+RKPRTIYSS QL L +RFQ TQYLALPERA+LAA LGLTQTQVKI
Sbjct: 104 EPSERRPQAPAKKLRKPRTIYSSLQLQHLNQRFQHTQYLALPERAQLAAQLGLTQTQVKI 163
Query: 199 WFQNRRSKFKKMWKSGEIPSE-QHPGASASPPCASPPVSAPASWD 242
WFQN+RSK+KK+ K E PG + S SPP+ P+ WD
Sbjct: 164 WFQNKRSKYKKLLKQNSGGQEGDFPGRTFSVSPCSPPL--PSLWD 206
>gi|20143960 distal-less homeobox 4 isoform b [Homo sapiens]
Length = 168
Score = 122 bits (306), Expect = 4e-28
Identities = 68/124 (54%), Positives = 80/124 (64%), Gaps = 3/124 (2%)
Query: 120 APYGTSSSPANNEPEKEDLEPEIRIVNGKPKKVRKPRTIYSSFQLAALQRRFQKTQYLAL 179
APY P ++E + EP R KK+RKPRTIYSS QL L +RFQ TQYLAL
Sbjct: 13 APYTVLCCPPDSEKPRLSPEPSERRPQAPAKKLRKPRTIYSSLQLQHLNQRFQHTQYLAL 72
Query: 180 PERAELAASLGLTQTQVKIWFQNRRSKFKKMWKSGEIPSE-QHPGASASPPCASPPVSAP 238
PERA+LAA LGLTQTQVKIWFQN+RSK+KK+ K E PG + S SPP+ P
Sbjct: 73 PERAQLAAQLGLTQTQVKIWFQNKRSKYKKLLKQNSGGQEGDFPGRTFSVSPCSPPL--P 130
Query: 239 ASWD 242
+ WD
Sbjct: 131 SLWD 134
>gi|239742243 PREDICTED: HPX-153 homeobox [Homo sapiens]
Length = 411
Score = 96.3 bits (238), Expect = 3e-20
Identities = 86/276 (31%), Positives = 126/276 (45%), Gaps = 52/276 (18%)
Query: 31 SGGGAGPGGNSSSSSSLHKPQESPTLPVSTATDSSYYTNQQHPAGGGGG-GGSPYAHMGS 89
+G +G GG+S S+ S + + A ++ + GGGGG G G+
Sbjct: 134 NGYSSGGGGHSPSADSGDEVPDDEDDDEDEAPETEAARGAEEARGGGGGLGARGSGCQGA 193
Query: 90 YQYQASGLNNVPYSA----KSSYDLGYTAAYTSYAPYGTSSSPANN----EPEKEDLEPE 141
+ AS V +A + + + + AP G ++P +P+++ +
Sbjct: 194 AETDASPGATVDEAAAPGPRENSPVAQGPPGGAAAPGGAGTTPQGTATAAKPKRKRTGSD 253
Query: 142 IRIVNGKPKKVRKPRTIYSSFQLAALQRRFQKTQYLALPERAELAASLGLTQTQVKIWFQ 201
+ +GKP R+ RT ++ QL AL+ +F+ T+YL++ ER LA SL LT+TQVKIWFQ
Sbjct: 254 SK--SGKP---RRARTAFTYEQLVALENKFKATRYLSVCERLNLALSLSLTETQVKIWFQ 308
Query: 202 NRRSKFKKMWKSGEIPSEQHPGASASPPCASPPVSAPASWDFGVPQRMAGGGGPGSG-GS 260
NRR+K+KK Q+PGA S P GGGGPG G G
Sbjct: 309 NRRTKWKK----------QNPGADTSAP-------------------TGGGGGPGPGAGP 339
Query: 261 GAGSSGS----SPSSAASAFLGNYPWYHQTSGSASH 292
G G G SPS A LG H +G +H
Sbjct: 340 GTGLPGGLSPLSPSPPMGAPLG----MHGPAGYPAH 371
Score = 29.6 bits (65), Expect = 3.8
Identities = 22/68 (32%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
Query: 225 SASPPCASPPVSAPASWDFGVPQRMAGGGGPG-SGGSGAGSSGSSPSSAASAFLGNYPWY 283
+A PCAS P APA G P R +G G G++G+ P +A F
Sbjct: 72 AACAPCASAPC-APAPAASGRPPRAEELERRALAGAGGVGAAGAEPPNAGDPFKAGEAET 130
Query: 284 HQTSGSAS 291
+ T+G +S
Sbjct: 131 NDTNGYSS 138
>gi|239753784 PREDICTED: NK1 homeobox 1 [Homo sapiens]
Length = 814
Score = 95.5 bits (236), Expect = 6e-20
Identities = 86/276 (31%), Positives = 126/276 (45%), Gaps = 52/276 (18%)
Query: 31 SGGGAGPGGNSSSSSSLHKPQESPTLPVSTATDSSYYTNQQHPAGGGGG-GGSPYAHMGS 89
+G +G GG+S S+ S + + A ++ + GGGGG G G+
Sbjct: 537 NGYSSGGGGHSPSADSGDEVPDDEDDDEDEAPETEAARGAEEARGGGGGLGARGSGCQGA 596
Query: 90 YQYQASGLNNVPYSA----KSSYDLGYTAAYTSYAPYGTSSSPANN----EPEKEDLEPE 141
+ AS V +A + + + + AP G ++P +P+++ +
Sbjct: 597 AETDASPGATVDEAAAPGPRENSPVAPGPPGGAAAPGGAGTTPQGTATAAKPKRKRTGSD 656
Query: 142 IRIVNGKPKKVRKPRTIYSSFQLAALQRRFQKTQYLALPERAELAASLGLTQTQVKIWFQ 201
+ +GKP R+ RT ++ QL AL+ +F+ T+YL++ ER LA SL LT+TQVKIWFQ
Sbjct: 657 SK--SGKP---RRARTAFTYEQLVALENKFKATRYLSVCERLNLALSLSLTETQVKIWFQ 711
Query: 202 NRRSKFKKMWKSGEIPSEQHPGASASPPCASPPVSAPASWDFGVPQRMAGGGGPGSG-GS 260
NRR+K+KK Q+PGA S P GGGGPG G G
Sbjct: 712 NRRTKWKK----------QNPGADTSAP-------------------TGGGGGPGPGAGP 742
Query: 261 GAGSSGS----SPSSAASAFLGNYPWYHQTSGSASH 292
G G G SPS A LG H +G +H
Sbjct: 743 GTGLPGGLSPLSPSPPMGAPLG----MHGPAGYPAH 774
Score = 29.6 bits (65), Expect = 3.8
Identities = 22/68 (32%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
Query: 225 SASPPCASPPVSAPASWDFGVPQRMAGGGGPG-SGGSGAGSSGSSPSSAASAFLGNYPWY 283
+A PCAS P APA G P R +G G G++G+ P +A F
Sbjct: 475 AACAPCASAPC-APAPAASGRPPRAEELERRALAGAGGVGAAGAEPPNAGDPFKAGEAET 533
Query: 284 HQTSGSAS 291
+ T+G +S
Sbjct: 534 NDTNGYSS 541
>gi|118582284 msh homeobox 1 [Homo sapiens]
Length = 303
Score = 94.7 bits (234), Expect = 1e-19
Identities = 86/287 (29%), Positives = 133/287 (46%), Gaps = 37/287 (12%)
Query: 30 PSGGGAGPGGNSSSSSSLH--------KPQESPTL-PVST-----------ATDSSYYTN 69
P+GGGAG +++++++ KP+ SP+L P S A +S+ +
Sbjct: 24 PAGGGAGQAPSAAAATAAAMGADEEGAKPKVSPSLLPFSVEALMADHRKPGAKESALAPS 83
Query: 70 QQHPAGGGGGG--GSPYAHMGSYQYQASGLNNVPYSAKSSYDLGYTAAYTSYAPYGTS-- 125
+ A GG G P +G+ +S +S L A + +P
Sbjct: 84 EGVQAAGGSAQPLGVPPGSLGAPDAPSSPRPLGHFSVGGLLKLPEDALVKAESPEKPERT 143
Query: 126 ---SSPANNEPEKEDLEPEIRIVNGKPKKVRKPRTIYSSFQLAALQRRFQKTQYLALPER 182
SP + P L P + K K RKPRT +++ QL AL+R+F++ QYL++ ER
Sbjct: 144 PWMQSPRFSPPPARRLSPPACTLR-KHKTNRKPRTPFTTAQLLALERKFRQKQYLSIAER 202
Query: 183 AELAASLGLTQTQVKIWFQNRRSKFKKMWKSGEIPSEQHPGASASPPCASPPVSAPASWD 242
AE ++SL LT+TQVKIWFQNRR+K K++ + +E A+ P PP + S+
Sbjct: 203 AEFSSSLSLTETQVKIWFQNRRAKAKRLQE-----AELEKLKMAAKPML-PPAAFGLSFP 256
Query: 243 FGVPQRMAGGGGPG-SGGSGAGSSGSSPSSAASAFLGN--YPWYHQT 286
G P +A G G SG + P + + + Y YH T
Sbjct: 257 LGGPAAVAAAAGASLYGASGPFQRAALPVAPVGLYTAHVGYSMYHLT 303
>gi|226437602 NK1 homeobox 2 [Homo sapiens]
Length = 310
Score = 92.0 bits (227), Expect = 6e-19
Identities = 67/177 (37%), Positives = 88/177 (49%), Gaps = 37/177 (20%)
Query: 127 SPANNEPEKEDLEPEIRIVNGKPKKVRKPRTIYSSFQLAALQRRFQKTQYLALPERAELA 186
SP + P + LEP K R+ RT ++ QL AL+ +F+ T+YL++ ER LA
Sbjct: 145 SPGSPRPRRRRLEPNCA-------KPRRARTAFTYEQLVALENKFRATRYLSVCERLNLA 197
Query: 187 ASLGLTQTQVKIWFQNRRSKFKKMWKSGEIPSEQHPGASASPPCASPPVSAPASWDFGVP 246
SL LT+TQVKIWFQNRR+K+KK Q+PGA + A G P
Sbjct: 198 LSLSLTETQVKIWFQNRRTKWKK----------QNPGADGA-----------AQVGGGAP 236
Query: 247 QRMAGGGGPGSGGSGAGSSGSSPSSAASAFLGNYPWYHQT-----SGSASHLQATAP 298
Q A GGG GG G+G S P + A F +P Y S ++ L A AP
Sbjct: 237 QPGAAGGG---GGGGSGGSPGPPGTGALHF-QTFPSYSAANVLFPSAASFPLTAAAP 289
>gi|239755439 PREDICTED: NK1 homeobox 2 [Homo sapiens]
Length = 332
Score = 92.0 bits (227), Expect = 6e-19
Identities = 67/177 (37%), Positives = 88/177 (49%), Gaps = 37/177 (20%)
Query: 127 SPANNEPEKEDLEPEIRIVNGKPKKVRKPRTIYSSFQLAALQRRFQKTQYLALPERAELA 186
SP + P + LEP K R+ RT ++ QL AL+ +F+ T+YL++ ER LA
Sbjct: 167 SPGSPRPRRRRLEPNCA-------KPRRARTAFTYEQLVALENKFRATRYLSVCERLNLA 219
Query: 187 ASLGLTQTQVKIWFQNRRSKFKKMWKSGEIPSEQHPGASASPPCASPPVSAPASWDFGVP 246
SL LT+TQVKIWFQNRR+K+KK Q+PGA + A G P
Sbjct: 220 LSLSLTETQVKIWFQNRRTKWKK----------QNPGADGA-----------AQVGGGAP 258
Query: 247 QRMAGGGGPGSGGSGAGSSGSSPSSAASAFLGNYPWYHQT-----SGSASHLQATAP 298
Q A GGG GG G+G S P + A F +P Y S ++ L A AP
Sbjct: 259 QPGAAGGG---GGGGSGGSPGPPGTGALHF-QTFPSYSAANVLFPSAASFPLTAAAP 311
>gi|239749920 PREDICTED: NK1 homeobox 2 [Homo sapiens]
Length = 332
Score = 92.0 bits (227), Expect = 6e-19
Identities = 67/177 (37%), Positives = 88/177 (49%), Gaps = 37/177 (20%)
Query: 127 SPANNEPEKEDLEPEIRIVNGKPKKVRKPRTIYSSFQLAALQRRFQKTQYLALPERAELA 186
SP + P + LEP K R+ RT ++ QL AL+ +F+ T+YL++ ER LA
Sbjct: 167 SPGSPRPRRRRLEPNCA-------KPRRARTAFTYEQLVALENKFRATRYLSVCERLNLA 219
Query: 187 ASLGLTQTQVKIWFQNRRSKFKKMWKSGEIPSEQHPGASASPPCASPPVSAPASWDFGVP 246
SL LT+TQVKIWFQNRR+K+KK Q+PGA + A G P
Sbjct: 220 LSLSLTETQVKIWFQNRRTKWKK----------QNPGADGA-----------AQVGGGAP 258
Query: 247 QRMAGGGGPGSGGSGAGSSGSSPSSAASAFLGNYPWYHQT-----SGSASHLQATAP 298
Q A GGG GG G+G S P + A F +P Y S ++ L A AP
Sbjct: 259 QPGAAGGG---GGGGSGGSPGPPGTGALHF-QTFPSYSAANVLFPSAASFPLTAAAP 311
>gi|239744223 PREDICTED: NK1 homeobox 2 [Homo sapiens]
Length = 332
Score = 92.0 bits (227), Expect = 6e-19
Identities = 67/177 (37%), Positives = 88/177 (49%), Gaps = 37/177 (20%)
Query: 127 SPANNEPEKEDLEPEIRIVNGKPKKVRKPRTIYSSFQLAALQRRFQKTQYLALPERAELA 186
SP + P + LEP K R+ RT ++ QL AL+ +F+ T+YL++ ER LA
Sbjct: 167 SPGSPRPRRRRLEPNCA-------KPRRARTAFTYEQLVALENKFRATRYLSVCERLNLA 219
Query: 187 ASLGLTQTQVKIWFQNRRSKFKKMWKSGEIPSEQHPGASASPPCASPPVSAPASWDFGVP 246
SL LT+TQVKIWFQNRR+K+KK Q+PGA + A G P
Sbjct: 220 LSLSLTETQVKIWFQNRRTKWKK----------QNPGADGA-----------AQVGGGAP 258
Query: 247 QRMAGGGGPGSGGSGAGSSGSSPSSAASAFLGNYPWYHQT-----SGSASHLQATAP 298
Q A GGG GG G+G S P + A F +P Y S ++ L A AP
Sbjct: 259 QPGAAGGG---GGGGSGGSPGPPGTGALHF-QTFPSYSAANVLFPSAASFPLTAAAP 311
>gi|239748344 PREDICTED: NK1 homeobox 1 [Homo sapiens]
Length = 653
Score = 88.2 bits (217), Expect = 9e-18
Identities = 67/182 (36%), Positives = 91/182 (50%), Gaps = 47/182 (25%)
Query: 120 APYGTSSSPANN----EPEKEDLEPEIRIVNGKPKKVRKPRTIYSSFQLAALQRRFQKTQ 175
AP G ++P +P+++ + + +GKP R+ RT ++ QL AL+ +F+ T+
Sbjct: 66 APGGAGTTPQGTATAAKPKRKRTGSDSK--SGKP---RRARTAFTYEQLVALENKFKATR 120
Query: 176 YLALPERAELAASLGLTQTQVKIWFQNRRSKFKKMWKSGEIPSEQHPGASASPPCASPPV 235
YL++ ER LA SL LT+TQVKIWFQNRR+K+KK Q+PGA S P
Sbjct: 121 YLSVCERLNLALSLSLTETQVKIWFQNRRTKWKK----------QNPGADTSAP------ 164
Query: 236 SAPASWDFGVPQRMAGGGGPGSG-GSGAGSSGS----SPSSAASAFLGNYPWYHQTSGSA 290
GGGGPG G G G G G SPS A LG H +G
Sbjct: 165 -------------TGGGGGPGPGAGPGTGLPGGLSPLSPSPPMGAPLG----MHGPAGYP 207
Query: 291 SH 292
+H
Sbjct: 208 AH 209
>gi|148746211 NK2 transcription factor related, locus 3 [Homo
sapiens]
Length = 364
Score = 85.5 bits (210), Expect = 6e-17
Identities = 66/184 (35%), Positives = 88/184 (47%), Gaps = 22/184 (11%)
Query: 148 KPKKVRKPRTIYSSFQLAALQRRFQKTQYLALPERAELAASLGLTQTQVKIWFQNRRSKF 207
KP+ RKPR ++S Q+ L+RRF++ +YL+ PER LA+SL LT TQVKIWFQNRR K
Sbjct: 144 KPRSRRKPRVLFSQAQVFELERRFKQQRYLSAPEREHLASSLKLTSTQVKIWFQNRRYKC 203
Query: 208 KKMWKSGEIPSEQHPGASASPPCASPP--VSAPASWDFGVP---QRMAGGGGPGSGGSGA 262
K+ + + GA A PP PP V+ P G P G P S G+ A
Sbjct: 204 KRQRQDKSL----ELGAHAPPP---PPRRVAVPVLVRDGKPCVTPSAQAYGAPYSVGASA 256
Query: 263 GSSGSSPSSAASAFLGNYPWYHQTSGSASHLQATAPLLHPTQTPQPHHHHHHHGGGGAPV 322
S S P+ Y ++ +A+ A A + + GGGG
Sbjct: 257 YSYNSFPAYG----------YGNSAAAAAAAAAAAAAAAAYSSSYGCAYPAGGGGGGGGT 306
Query: 323 SAGT 326
SA T
Sbjct: 307 SAAT 310
Score = 34.7 bits (78), Expect = 0.12
Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 8/60 (13%)
Query: 30 PSGGGAGPGGNSSSSSSLHKPQESPTLPVSTATDSSYYTNQQHPAGGGGGGGSPYAHMGS 89
P+GGG G GG S++++++ P +A + N + G G GG + H G+
Sbjct: 296 PAGGGGGGGGTSAATTAMQ--------PACSAAGGGPFVNVSNLGGFGSGGSAQPLHQGT 347
Score = 29.6 bits (65), Expect = 3.8
Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 6/64 (9%)
Query: 39 GNSSSSSSLHKPQESPTLPVSTATDSSYYTNQQHPAGGGGGGGSPYAHMGSYQYQASGLN 98
GNS+++++ + + A SSY +PAGGGGGGG A + Q S
Sbjct: 268 GNSAAAAAA----AAAAAAAAAAYSSSY--GCAYPAGGGGGGGGTSAATTAMQPACSAAG 321
Query: 99 NVPY 102
P+
Sbjct: 322 GGPF 325
>gi|210147470 NK2 transcription factor related, locus 6 [Homo
sapiens]
Length = 219
Score = 84.3 bits (207), Expect = 1e-16
Identities = 60/167 (35%), Positives = 81/167 (48%), Gaps = 18/167 (10%)
Query: 148 KPKKVRKPRTIYSSFQLAALQRRFQKTQYLALPERAELAASLGLTQTQVKIWFQNRRSKF 207
K ++ RKPR ++S Q+ AL+RRF++ +YL+ PER LA++L LT TQVKIWFQNRR K
Sbjct: 46 KARQRRKPRVLFSQAQVLALERRFKQQRYLSAPEREHLASALQLTSTQVKIWFQNRRYKC 105
Query: 208 KKMWKSGEIPSEQHPGASA----------SPPCASPPVSAPA---SWDFGV-PQRMAGG- 252
K+ + + HP PC P APA + V P GG
Sbjct: 106 KRQRQDKSLELAGHPLTPRRVAVPVLVRDGKPCLGPGPGAPAFPSPYSAAVSPYSCYGGY 165
Query: 253 -GGPGSGGSGAGSSGSSPSSAASAFLGNYPWYH--QTSGSASHLQAT 296
G P G G +G+ A L + + H Q + HL AT
Sbjct: 166 SGAPYGAGYGTCYAGAPSGPAPHTPLASAGFGHGGQNATPQGHLAAT 212
>gi|6633798 BarH-like homeobox 2 [Homo sapiens]
Length = 279
Score = 84.0 bits (206), Expect = 2e-16
Identities = 47/102 (46%), Positives = 65/102 (63%), Gaps = 9/102 (8%)
Query: 113 TAAYTSYAPYGTSSSPANNEPEKEDLEPEIRIVNGKPKKVRKPRTIYSSFQLAALQRRFQ 172
T A ++ AP G + A++E E E P + KK R+ RTI++ QL L+++FQ
Sbjct: 103 TEAVSAEAPGGEAL--ASSESETEQPTP-------RQKKPRRSRTIFTELQLMGLEKKFQ 153
Query: 173 KTQYLALPERAELAASLGLTQTQVKIWFQNRRSKFKKMWKSG 214
K +YL+ P+R +LA SLGLTQ QVK W+QNRR K+KKM G
Sbjct: 154 KQKYLSTPDRLDLAQSLGLTQLQVKTWYQNRRMKWKKMVLKG 195
>gi|89257348 homeo box HB9 [Homo sapiens]
Length = 401
Score = 80.9 bits (198), Expect = 1e-15
Identities = 69/252 (27%), Positives = 106/252 (42%), Gaps = 51/252 (20%)
Query: 32 GGGAGPGGNSSSSSSLHKPQESPTLPVSTATDSSYYTNQQHPAGGGGGGGSPYAHMGSYQ 91
GGG GG+ H + + A + HP G GG G P A Y
Sbjct: 102 GGGGTGGGHGGPHHHAHPGAAAAAAAAAAAAAAGGLALGLHPGGAQGGAGLP-AQAALYG 160
Query: 92 YQASGLNNVPYSAKSSYDLGYTAAYTSYAPYGTSSSPANN-EPEKED------------- 137
+ G + +A + G A + P + PA+ +P K
Sbjct: 161 HPVYGYSAAAAAAALA---GQHPALSYSYPQVQGAHPAHPADPIKLGAGTFQLDQWLRAS 217
Query: 138 ----LEPEIRIVNGKPK-----KVRKPRTIYSSFQLAALQRRFQKTQYLALPERAELAAS 188
+ P++ N + + K R+PRT ++S QL L+ +F+ +YL+ P+R E+A S
Sbjct: 218 TAGMILPKMPDFNSQAQSNLLGKCRRPRTAFTSQQLLELEHQFKLNKYLSRPKRFEVATS 277
Query: 189 LGLTQTQVKIWFQNRRSKFKKMWKSGEIPSEQHPGASASPPCASPPVSAPASWDFGVPQR 248
L LT+TQVKIWFQNRR K+K+ K+ E +++ ++
Sbjct: 278 LMLTETQVKIWFQNRRMKWKRSKKAKEQAAQE------------------------AEKQ 313
Query: 249 MAGGGGPGSGGS 260
GGGG G GG+
Sbjct: 314 KGGGGGAGKGGA 325
Score = 35.0 bits (79), Expect = 0.091
Identities = 31/124 (25%), Positives = 44/124 (35%), Gaps = 33/124 (26%)
Query: 225 SASPPCASPPVSAPASWDFGVPQRMAGGGGPGSGGSGAGSSGSSPSSAASAFLGNYPWYH 284
+ PP A+ SAP + + +G GG G GG +G + S S A+S
Sbjct: 14 AVDPPRAASAQSAPLALVTSLAAAASGTGGGGGGGGASGGTSGSCSPASS---------E 64
Query: 285 QTSGSASHLQATAP------LLHPTQTPQPH------------------HHHHHHGGGGA 320
+ A L+A +P H P+P HHH H G A
Sbjct: 65 PPAAPADRLRAESPSPPRLLAAHCALLPKPGFLGAGGGGGGTGGGHGGPHHHAHPGAAAA 124
Query: 321 PVSA 324
+A
Sbjct: 125 AAAA 128
>gi|157426823 NK2 homeobox 4 [Homo sapiens]
Length = 354
Score = 80.9 bits (198), Expect = 1e-15
Identities = 75/315 (23%), Positives = 114/315 (36%), Gaps = 40/315 (12%)
Query: 22 TYHQHQQPPSGGGAGPGGNSSSSSSLHKPQESPTLPVSTATDSS-YYTNQQHPAGGGGGG 80
TY + G G G ++++ P P+ +T + H A
Sbjct: 23 TYKKFSGAMDGAPPGLGAPLGAAAAYRAPPPGPSSQAATVAGMQPSHAMAGHNAAAAAAA 82
Query: 81 GSPYAHMGSYQYQASGLNNVPYSAKSSY------DLGYTAAYTSYAPYGTSSS--PANNE 132
+ A + + G++ P+ A SY ++G AYT G ++ AN +
Sbjct: 83 AAAAAAAAATYHMPPGVSQFPHGAMGSYCNGGLGNMGELPAYTDGMRGGAATGWYGANPD 142
Query: 133 PEKEDLEP---------------------------EIRIVNGKPKKVRKPRTIYSSFQLA 165
P + + RK R ++S Q+
Sbjct: 143 PRYSSISRFMGPSAGVNVAGMGSLTGIADAAKSLGPLHAAAAAAAPRRKRRVLFSQAQVY 202
Query: 166 ALQRRFQKTQYLALPERAELAASLGLTQTQVKIWFQNRRSKFKKMWKSGEIPSEQHPGAS 225
L+RRF++ +YL+ PER LA+ + LT TQVKIWFQN R K K+ K Q G
Sbjct: 203 ELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQAKDKAAQQLQQEGGL 262
Query: 226 ASPPCASPP---VSAPASWDFGVPQRMAGGGGPGSGGSGAGSSGSSPSSAASAFLGNYPW 282
PP P V+ P G P + G P G +G +P+ + P
Sbjct: 263 GPPPPPPPSPRRVAVPVLVKDGKPCQ-NGASTPTPGQAGPQPPAPTPAPELEELSPSPPA 321
Query: 283 YHQTSGSASHLQATA 297
H G + L A A
Sbjct: 322 LHGPGGGLAALDAAA 336
>gi|24497513 homeobox A3 isoform a [Homo sapiens]
Length = 443
Score = 80.5 bits (197), Expect = 2e-15
Identities = 97/378 (25%), Positives = 132/378 (34%), Gaps = 73/378 (19%)
Query: 14 STQIAASSTYHQHQ---QPPSGGGAGPGGNSSSSSSLHK----PQESPTL-------PVS 59
S + A YH+ Q PS G P + S + L P + P+L P
Sbjct: 36 SAALGADGEYHRPACSLQSPSSAGGHPKAHELSEACLRTLSAPPSQPPSLGEPPLHPPPP 95
Query: 60 TATDSSYYTNQQHPAGGGGGGGSPYAHMGSYQYQASGLNNVPYSAKSSYDLGYTAAYTSY 119
A + Q P +P + Q + N P +A S L
Sbjct: 96 QAAPPAPQPPQPAPQPPAPTPAAPPPPSSASPPQNASNNPTPANAAKSPLLNSPTVAKQI 155
Query: 120 APYGTSSSPANNEPEKEDLEPEIRIVNGKPK---KVRKPRTIYSSFQLAALQRRFQKTQY 176
P+ S + E + P ++ RT Y+S QL L++ F +Y
Sbjct: 156 FPWMKESRQNTKQKTSSSSSGESCAGDKSPPGQASSKRARTAYTSAQLVELEKEFHFNRY 215
Query: 177 LALPERAELAASLGLTQTQVKIWFQNRRSKFKKMWK-SGEIPSE--QHPGASASPPCAS- 232
L P R E+A L LT+ Q+KIWFQNRR K+KK K G + S Q P S PP A
Sbjct: 216 LCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKDQKGKGMLTSSGGQSPSRSPVPPGAGG 275
Query: 233 -------------------PPVSAPASWDFGV-----------------PQRMAGGGGPG 256
PP S P +G+ PQ+ G G
Sbjct: 276 YLNSMHSLVNSVPYEPQSPPPFSKPPQGTYGLPPASYPASLPSCAPPPPPQKRYTAAGAG 335
Query: 257 SGGS-----------GAGSSGSSPSSAASAFL-GNYPWYHQTSGSA----SHLQATAPLL 300
+GG+ G GS G+ + F+ G+Y SG A +HL A
Sbjct: 336 AGGTPDYDPHAHGLQGNGSYGTPHIQGSPVFVGGSYVEPMSNSGPALFGLTHLPHAASGA 395
Query: 301 HPTQTPQPHHHHHHHGGG 318
P HHHG G
Sbjct: 396 MDYGGAGPLGSGHHHGPG 413
>gi|13562112 homeobox A3 isoform a [Homo sapiens]
Length = 443
Score = 80.5 bits (197), Expect = 2e-15
Identities = 97/378 (25%), Positives = 132/378 (34%), Gaps = 73/378 (19%)
Query: 14 STQIAASSTYHQHQ---QPPSGGGAGPGGNSSSSSSLHK----PQESPTL-------PVS 59
S + A YH+ Q PS G P + S + L P + P+L P
Sbjct: 36 SAALGADGEYHRPACSLQSPSSAGGHPKAHELSEACLRTLSAPPSQPPSLGEPPLHPPPP 95
Query: 60 TATDSSYYTNQQHPAGGGGGGGSPYAHMGSYQYQASGLNNVPYSAKSSYDLGYTAAYTSY 119
A + Q P +P + Q + N P +A S L
Sbjct: 96 QAAPPAPQPPQPAPQPPAPTPAAPPPPSSASPPQNASNNPTPANAAKSPLLNSPTVAKQI 155
Query: 120 APYGTSSSPANNEPEKEDLEPEIRIVNGKPK---KVRKPRTIYSSFQLAALQRRFQKTQY 176
P+ S + E + P ++ RT Y+S QL L++ F +Y
Sbjct: 156 FPWMKESRQNTKQKTSSSSSGESCAGDKSPPGQASSKRARTAYTSAQLVELEKEFHFNRY 215
Query: 177 LALPERAELAASLGLTQTQVKIWFQNRRSKFKKMWK-SGEIPSE--QHPGASASPPCAS- 232
L P R E+A L LT+ Q+KIWFQNRR K+KK K G + S Q P S PP A
Sbjct: 216 LCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKDQKGKGMLTSSGGQSPSRSPVPPGAGG 275
Query: 233 -------------------PPVSAPASWDFGV-----------------PQRMAGGGGPG 256
PP S P +G+ PQ+ G G
Sbjct: 276 YLNSMHSLVNSVPYEPQSPPPFSKPPQGTYGLPPASYPASLPSCAPPPPPQKRYTAAGAG 335
Query: 257 SGGS-----------GAGSSGSSPSSAASAFL-GNYPWYHQTSGSA----SHLQATAPLL 300
+GG+ G GS G+ + F+ G+Y SG A +HL A
Sbjct: 336 AGGTPDYDPHAHGLQGNGSYGTPHIQGSPVFVGGSYVEPMSNSGPALFGLTHLPHAASGA 395
Query: 301 HPTQTPQPHHHHHHHGGG 318
P HHHG G
Sbjct: 396 MDYGGAGPLGSGHHHGPG 413
>gi|5031761 homeobox A1 isoform a [Homo sapiens]
Length = 335
Score = 80.5 bits (197), Expect = 2e-15
Identities = 75/259 (28%), Positives = 102/259 (39%), Gaps = 47/259 (18%)
Query: 23 YHQHQQPPSGGGAGPGGNSSSSSSLHKPQESPTLPVSTATDSSYYTNQQHPAGGGGGGGS 82
+H H QP + +G G S S SS S +A S Y NQ+ GG +
Sbjct: 71 HHHHPQPATYQTSGNLGVSYSHSSCGPSYGSQNF---SAPYSPYALNQEADVSGGYPQCA 127
Query: 83 PYAHMGS-----------YQYQASGLNNVPYSAKSSY-----DLGYTAAYTSYAPYGTSS 126
P + G+ +Q A G P SY L S +P S
Sbjct: 128 PAVYSGNLSSPMVQHHHHHQGYAGGAVGSPQYIHHSYGQEHQSLALATYNNSLSPLHASH 187
Query: 127 SPANNEPEKEDLEPE-----IRIVNGKPK-----------KVRKPRTIYSSFQLAALQRR 170
A P E P +++ PK + RT +++ QL L++
Sbjct: 188 QEACRSPASETSSPAQTFDWMKVKRNPPKTGKVGEYGYLGQPNAVRTNFTTKQLTELEKE 247
Query: 171 FQKTQYLALPERAELAASLGLTQTQVKIWFQNRRSKFKKMWKSGEIP------------S 218
F +YL R E+AASL L +TQVKIWFQNRR K KK K G +P +
Sbjct: 248 FHFNKYLTRARRVEIAASLQLNETQVKIWFQNRRMKQKKREKEGLLPISPATPPGNDEKA 307
Query: 219 EQHPGASASPPCASPPVSA 237
E+ S+S PC P S+
Sbjct: 308 EESSEKSSSSPCVPSPGSS 326
Score = 31.6 bits (70), Expect = 1.0
Identities = 23/74 (31%), Positives = 31/74 (41%), Gaps = 6/74 (8%)
Query: 257 SGGSGAGSSGSS--PSSAASAFLGNYPWY--HQTSGSASHLQATAPLLHP--TQTPQPHH 310
SG G S SS PS + F Y Y +Q + + AP ++ +P H
Sbjct: 83 SGNLGVSYSHSSCGPSYGSQNFSAPYSPYALNQEADVSGGYPQCAPAVYSGNLSSPMVQH 142
Query: 311 HHHHHGGGGAPVSA 324
HHHH G G V +
Sbjct: 143 HHHHQGYAGGAVGS 156
Score = 29.6 bits (65), Expect = 3.8
Identities = 9/12 (75%), Positives = 9/12 (75%)
Query: 304 QTPQPHHHHHHH 315
Q PHHHHHHH
Sbjct: 60 QIGSPHHHHHHH 71
Score = 28.5 bits (62), Expect = 8.6
Identities = 8/11 (72%), Positives = 9/11 (81%)
Query: 305 TPQPHHHHHHH 315
+P HHHHHHH
Sbjct: 63 SPHHHHHHHHH 73
>gi|27886557 msh homeobox 2 [Homo sapiens]
Length = 267
Score = 80.1 bits (196), Expect = 2e-15
Identities = 40/83 (48%), Positives = 57/83 (68%), Gaps = 1/83 (1%)
Query: 128 PANNEPEKEDLEPEIRIVNGKPKKVRKPRTIYSSFQLAALQRRFQKTQYLALPERAELAA 187
P P + P + K K RKPRT +++ QL AL+R+F++ QYL++ ERAE ++
Sbjct: 119 PGRYSPPPRHMSPTTCTLR-KHKTNRKPRTPFTTSQLLALERKFRQKQYLSIAERAEFSS 177
Query: 188 SLGLTQTQVKIWFQNRRSKFKKM 210
SL LT+TQVKIWFQNRR+K K++
Sbjct: 178 SLNLTETQVKIWFQNRRAKAKRL 200
>gi|24497526 homeobox B1 [Homo sapiens]
Length = 301
Score = 79.3 bits (194), Expect = 4e-15
Identities = 72/234 (30%), Positives = 101/234 (43%), Gaps = 36/234 (15%)
Query: 37 PGGNSSSSSSLHKPQESPTLPVSTATDSSYYTNQQHPAGGGGGGGSPYAHMGSYQYQASG 96
P S+ + P +P+ A SY +Q +P G G G Y H SY Q G
Sbjct: 64 PAQQPPSTLGVPFPSSAPSGYAPAACSPSYGPSQYYPLGQSEGDGG-YFHPSSYGAQLGG 122
Query: 97 LNNVPYSAKSSYDLGYTAAYTSYAPYGTSS-SPANNEPEKEDLEPE-------------- 141
L++ Y A + Y + Y T+S +PA + ED E
Sbjct: 123 LSD-GYGAGGAGPGPYPPQHPPYGNEQTASFAPAYADLLSEDKETPCPSEPNTPTARTFD 181
Query: 142 -IRIVNGKPK--KVRKP--------RTIYSSFQLAALQRRFQKTQYLALPERAELAASLG 190
+++ PK KV +P RT +++ QL L++ F +YL+ R E+AA+L
Sbjct: 182 WMKVKRNPPKTAKVSEPGLGSPSGLRTNFTTRQLTELEKEFHFNKYLSRARRVEIAATLE 241
Query: 191 LTQTQVKIWFQNRRSKFKKMWK-SGEI-------PSEQHPGASASPPCASPPVS 236
L +TQVKIWFQNRR K KK + G + P E AS C SP S
Sbjct: 242 LNETQVKIWFQNRRMKQKKREREEGRVPPAPPGCPKEAAGDASDQSTCTSPEAS 295
>gi|31377777 NK2 homeobox 8 [Homo sapiens]
Length = 239
Score = 79.0 bits (193), Expect = 6e-15
Identities = 56/163 (34%), Positives = 76/163 (46%), Gaps = 16/163 (9%)
Query: 124 TSSSPANNEPEKEDLEPEIRIVNGKPKKVRKPRTIYSSFQLAALQRRFQKTQYLALPERA 183
TS ++ P P +K +K R ++S Q L+RRF++ +YL+ PER
Sbjct: 61 TSPPDSSQRPSARPASP-----GSDAEKRKKRRVLFSKAQTLELERRFRQQRYLSAPERE 115
Query: 184 ELAASLGLTQTQVKIWFQNRRSKFKKMWKSGEIPSEQHPGASASPPCASPP-----VSAP 238
+LA+ L LT TQVKIWFQN R K K+ G + + P +AS + P V P
Sbjct: 116 QLASLLRLTPTQVKIWFQNHRYKLKRARAPG---AAESPDLAASAELHAAPGLLRRVVVP 172
Query: 239 ASWDFGVPQRMAGGGGPGSGGSGAGSSGSSPSSAASAFLGNYP 281
G P GGGG G G+ A AA+ L YP
Sbjct: 173 VLVRDGQP---CGGGGGGEVGTAAAQEKCGAPPAAACPLPGYP 212
>gi|147901462 brain specific homeobox [Homo sapiens]
Length = 233
Score = 79.0 bits (193), Expect = 6e-15
Identities = 52/132 (39%), Positives = 72/132 (54%), Gaps = 10/132 (7%)
Query: 140 PEIRIVNGKPKKVRKPRTIYSSFQLAALQRRFQKTQYLALPERAELAASLGLTQTQVKIW 199
P+ + GK + RK RT++S QL+ L++RF+ +YL+ PER ELA +L L++TQVK W
Sbjct: 98 PQHAELPGKHCRRRKARTVFSDSQLSGLEKRFEIQRYLSTPERVELATALSLSETQVKTW 157
Query: 200 FQNRRSKFKK-MWKSGEIPS--------EQHPGASASPPCASPPVSAPAS-WDFGVPQRM 249
FQNRR K KK + KS + P E P S + A +S PA + P+
Sbjct: 158 FQNRRMKHKKQLRKSQDEPKAPDGPESPEGSPRGSEAATAAEARLSLPAGPFVLTEPEDE 217
Query: 250 AGGGGPGSGGSG 261
G G GSG
Sbjct: 218 VDIGDEGELGSG 229
>gi|14149728 BarH-like homeobox 1 [Homo sapiens]
Length = 327
Score = 78.2 bits (191), Expect = 9e-15
Identities = 65/211 (30%), Positives = 89/211 (42%), Gaps = 35/211 (16%)
Query: 39 GNSSSSSSLHKPQESPTLPVSTATDSSYYTNQQHPAGGGGGGGSPYAHMGSYQYQASGLN 98
G+ S L ES + S A+ P GG G +H+ Q A +
Sbjct: 30 GDCRSPLELSPRSESSSDCSSPASPGRDCLETGTPRPGGASGPGLDSHLQPGQLSAPAQS 89
Query: 99 NVPYSAKSSYD-LGYTAAYTSYAPYGTSSSPANNEPE----------------------- 134
S+ D L + APY +S PA EP
Sbjct: 90 RTVTSSFLIRDILADCKPLAACAPYSSSGQPAAPEPGGRLAAKAAEDFRDKLDKSGSNAS 149
Query: 135 -------KEDLEPEIRIVNGKP----KKVRKPRTIYSSFQLAALQRRFQKTQYLALPERA 183
KE+ + EI P KK RK RT ++ QLA L+R F++ +YL++ +R
Sbjct: 150 SDSEYKVKEEGDREISSSRDSPPVRLKKPRKARTAFTDHQLAQLERSFERQKYLSVQDRM 209
Query: 184 ELAASLGLTQTQVKIWFQNRRSKFKKMWKSG 214
ELAASL LT TQVK W+QNRR+K+K+ G
Sbjct: 210 ELAASLNLTDTQVKTWYQNRRTKWKRQTAVG 240
>gi|19923391 homeobox D3 [Homo sapiens]
Length = 432
Score = 77.4 bits (189), Expect = 2e-14
Identities = 68/208 (32%), Positives = 88/208 (42%), Gaps = 32/208 (15%)
Query: 32 GGGAGPGGNSSSSSSLHKPQESPTLPVSTATDSSYYTNQQHPAGGGGGGGSPYAHMGSYQ 91
GGG+ P G +S P PTLP S+ T+ + P GG S
Sbjct: 102 GGGSQPPGLNSEQQPPQPPPPPPTLPPSSPTNPGGGVPAKKPKGGPNASSSS-------- 153
Query: 92 YQASGLNNVPYSAKSSYDLGYTAAYTSYAPYGTSSSPANNEPEKEDLEPEIRIVNGKPKK 151
P+ +S + + S A G S ED P G K
Sbjct: 154 -ATISKQIFPWMKESRQN---SKQKNSCATAGESC---------EDKSPP-----GPASK 195
Query: 152 VRKPRTIYSSFQLAALQRRFQKTQYLALPERAELAASLGLTQTQVKIWFQNRRSKFKKMW 211
+ RT Y+S QL L++ F +YL P R E+A L LT+ Q+KIWFQNRR K+KK
Sbjct: 196 --RVRTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKDQ 253
Query: 212 KSGEIPSEQHPGASASPPCASPPVSAPA 239
K+ I H AS SP SPP+ A
Sbjct: 254 KAKGI---LHSPASQSPE-RSPPLGGAA 277
>gi|153218470 BarH-like homeobox 1 [Homo sapiens]
Length = 254
Score = 77.4 bits (189), Expect = 2e-14
Identities = 35/67 (52%), Positives = 50/67 (74%)
Query: 148 KPKKVRKPRTIYSSFQLAALQRRFQKTQYLALPERAELAASLGLTQTQVKIWFQNRRSKF 207
K KK R+ RT+++ QL L++RF+K +YL+ P+R +LA SLGL+Q QVK W+QNRR K+
Sbjct: 138 KAKKGRRSRTVFTELQLMGLEKRFEKQKYLSTPDRIDLAESLGLSQLQVKTWYQNRRMKW 197
Query: 208 KKMWKSG 214
KK+ G
Sbjct: 198 KKIVLQG 204
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.309 0.126 0.382
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,640,159
Number of Sequences: 37866
Number of extensions: 1002956
Number of successful extensions: 15019
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 537
Number of HSP's successfully gapped in prelim test: 439
Number of HSP's that attempted gapping in prelim test: 8600
Number of HSP's gapped (non-prelim): 4893
length of query: 328
length of database: 18,247,518
effective HSP length: 103
effective length of query: 225
effective length of database: 14,347,320
effective search space: 3228147000
effective search space used: 3228147000
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.