Search of human proteins with 13129010

Search of human proteins with 13129010

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|13129010 nudix-type motif 9 isoform a [Homo sapiens]
         (350 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|13129010 nudix-type motif 9 isoform a [Homo sapiens]               720   0.0  
gi|37594457 nudix-type motif 9 isoform b [Homo sapiens]               626   e-179
gi|4507689 transient receptor potential cation channel, subfamil...   165   5e-41
gi|118026927 nudix (nucleoside diphosphate linked moiety X)-type...    36   0.045
gi|17865632 mitochondrial tumor suppressor 1 isoform 5 [Homo sap...    33   0.29 
gi|50348611 mitochondrial tumor suppressor 1 isoform 1 [Homo sap...    33   0.29 
gi|50348617 mitochondrial tumor suppressor 1 isoform 2 [Homo sap...    33   0.29 
gi|50348626 mitochondrial tumor suppressor 1 isoform 4 [Homo sap...    33   0.29 
gi|163644333 zinc finger protein 397 opposite strand [Homo sapiens]    33   0.29 
gi|149363695 hypothetical protein LOC25943 [Homo sapiens]              33   0.50 
gi|156104908 myosin heavy chain 6 [Homo sapiens]                       32   0.65 
gi|110611151 snurportin 1 [Homo sapiens]                               31   1.9  
gi|110611149 snurportin 1 [Homo sapiens]                               31   1.9  
gi|5031833 snurportin 1 [Homo sapiens]                                 31   1.9  
gi|98986453 myosin, heavy chain 3, skeletal muscle, embryonic [H...    31   1.9  
gi|115527082 myosin, heavy chain 1, skeletal muscle, adult [Homo...    31   1.9  
gi|110611903 myosin, heavy polypeptide 4, skeletal muscle [Homo ...    31   1.9  
gi|66773344 hypothetical protein LOC140710 [Homo sapiens]              31   1.9  
gi|239753314 PREDICTED: similar to RIKEN cDNA C230030N03 [Homo s...    30   2.5  
gi|87298939 hypothetical protein LOC131831 [Homo sapiens]              30   2.5  
gi|153945790 myosin, heavy chain 8, skeletal muscle, perinatal [...    30   2.5  
gi|53759148 retinoblastoma binding protein 5 [Homo sapiens]            30   2.5  
gi|153791586 myosin, heavy chain 2, skeletal muscle, adult [Homo...    30   3.2  
gi|153792663 myosin, heavy chain 2, skeletal muscle, adult [Homo...    30   3.2  
gi|42476009 highly divergent homeobox [Homo sapiens]                   30   4.2  
gi|205277396 dynactin 1 isoform 4 [Homo sapiens]                       29   5.5  
gi|205277392 dynactin 1 isoform 3 [Homo sapiens]                       29   5.5  
gi|13259508 dynactin 1 isoform 2 [Homo sapiens]                        29   5.5  
gi|13259510 dynactin 1 isoform 1 [Homo sapiens]                        29   5.5  
gi|110624781 myosin, heavy polypeptide 13, skeletal muscle [Homo...    29   5.5  

>gi|13129010 nudix-type motif 9 isoform a [Homo sapiens]
          Length = 350

 Score =  720 bits (1858), Expect = 0.0
 Identities = 350/350 (100%), Positives = 350/350 (100%)

Query: 1   MAGRLLGKALAAVSLSLALASVTIRSSRCRGIQAFRNSFSSSWFHLNTNVMSGSNGSKEN 60
           MAGRLLGKALAAVSLSLALASVTIRSSRCRGIQAFRNSFSSSWFHLNTNVMSGSNGSKEN
Sbjct: 1   MAGRLLGKALAAVSLSLALASVTIRSSRCRGIQAFRNSFSSSWFHLNTNVMSGSNGSKEN 60

Query: 61  SHNKARTSPYPGSKVERSQVPNEKVGWLVEWQDYKPVEYTAVSVLAGPRWADPQISESNF 120
           SHNKARTSPYPGSKVERSQVPNEKVGWLVEWQDYKPVEYTAVSVLAGPRWADPQISESNF
Sbjct: 61  SHNKARTSPYPGSKVERSQVPNEKVGWLVEWQDYKPVEYTAVSVLAGPRWADPQISESNF 120

Query: 121 SPKFNEKDGHVERKSKNGLYEIENGRPRNPAGRTGLVGRGLLGRWGPNHAADPIITRWKR 180
           SPKFNEKDGHVERKSKNGLYEIENGRPRNPAGRTGLVGRGLLGRWGPNHAADPIITRWKR
Sbjct: 121 SPKFNEKDGHVERKSKNGLYEIENGRPRNPAGRTGLVGRGLLGRWGPNHAADPIITRWKR 180

Query: 181 DSSGNKIMHPVSGKHILQFVAIKRKDCGEWAIPGGMVDPGEKISATLKREFGEEALNSLQ 240
           DSSGNKIMHPVSGKHILQFVAIKRKDCGEWAIPGGMVDPGEKISATLKREFGEEALNSLQ
Sbjct: 181 DSSGNKIMHPVSGKHILQFVAIKRKDCGEWAIPGGMVDPGEKISATLKREFGEEALNSLQ 240

Query: 241 KTSAEKREIEEKLHKLFSQDHLVIYKGYVDDPRNTDNAWMETEAVNYHDETGEIMDNLML 300
           KTSAEKREIEEKLHKLFSQDHLVIYKGYVDDPRNTDNAWMETEAVNYHDETGEIMDNLML
Sbjct: 241 KTSAEKREIEEKLHKLFSQDHLVIYKGYVDDPRNTDNAWMETEAVNYHDETGEIMDNLML 300

Query: 301 EAGDDAGKVKWVDINDKLKLYASHSQFIKLVAEKRDAHWSEDSEADCHAL 350
           EAGDDAGKVKWVDINDKLKLYASHSQFIKLVAEKRDAHWSEDSEADCHAL
Sbjct: 301 EAGDDAGKVKWVDINDKLKLYASHSQFIKLVAEKRDAHWSEDSEADCHAL 350


>gi|37594457 nudix-type motif 9 isoform b [Homo sapiens]
          Length = 300

 Score =  626 bits (1614), Expect = e-179
 Identities = 300/300 (100%), Positives = 300/300 (100%)

Query: 51  MSGSNGSKENSHNKARTSPYPGSKVERSQVPNEKVGWLVEWQDYKPVEYTAVSVLAGPRW 110
           MSGSNGSKENSHNKARTSPYPGSKVERSQVPNEKVGWLVEWQDYKPVEYTAVSVLAGPRW
Sbjct: 1   MSGSNGSKENSHNKARTSPYPGSKVERSQVPNEKVGWLVEWQDYKPVEYTAVSVLAGPRW 60

Query: 111 ADPQISESNFSPKFNEKDGHVERKSKNGLYEIENGRPRNPAGRTGLVGRGLLGRWGPNHA 170
           ADPQISESNFSPKFNEKDGHVERKSKNGLYEIENGRPRNPAGRTGLVGRGLLGRWGPNHA
Sbjct: 61  ADPQISESNFSPKFNEKDGHVERKSKNGLYEIENGRPRNPAGRTGLVGRGLLGRWGPNHA 120

Query: 171 ADPIITRWKRDSSGNKIMHPVSGKHILQFVAIKRKDCGEWAIPGGMVDPGEKISATLKRE 230
           ADPIITRWKRDSSGNKIMHPVSGKHILQFVAIKRKDCGEWAIPGGMVDPGEKISATLKRE
Sbjct: 121 ADPIITRWKRDSSGNKIMHPVSGKHILQFVAIKRKDCGEWAIPGGMVDPGEKISATLKRE 180

Query: 231 FGEEALNSLQKTSAEKREIEEKLHKLFSQDHLVIYKGYVDDPRNTDNAWMETEAVNYHDE 290
           FGEEALNSLQKTSAEKREIEEKLHKLFSQDHLVIYKGYVDDPRNTDNAWMETEAVNYHDE
Sbjct: 181 FGEEALNSLQKTSAEKREIEEKLHKLFSQDHLVIYKGYVDDPRNTDNAWMETEAVNYHDE 240

Query: 291 TGEIMDNLMLEAGDDAGKVKWVDINDKLKLYASHSQFIKLVAEKRDAHWSEDSEADCHAL 350
           TGEIMDNLMLEAGDDAGKVKWVDINDKLKLYASHSQFIKLVAEKRDAHWSEDSEADCHAL
Sbjct: 241 TGEIMDNLMLEAGDDAGKVKWVDINDKLKLYASHSQFIKLVAEKRDAHWSEDSEADCHAL 300


>gi|4507689 transient receptor potential cation channel, subfamily M,
            member 2 [Homo sapiens]
          Length = 1503

 Score =  165 bits (418), Expect = 5e-41
 Identities = 102/285 (35%), Positives = 146/285 (51%), Gaps = 21/285 (7%)

Query: 59   ENSHNKARTSPYPGSKVERSQVPNEKVGWLVEWQDYKPVEYTAVSVLAGPRWADPQISES 118
            ++ H  AR   YP   V R  VPNEKV W  E+  Y P  YTA    A          E 
Sbjct: 1236 DSYHVNARHLLYPNCPVTRFPVPNEKVPWETEFLIYDPPFYTAERKDAAAMDPMGDTLEP 1295

Query: 119  NFSPKFNEKDGHVERKSKNGLYEIENGRPRNPAGRTGLVGRGLLGRWGPNHAADPIITRW 178
              + ++N  DG  +R+S +G Y ++ G P NP GRTGL GRG L  +GPNH   P++TRW
Sbjct: 1296 LSTIQYNVVDGLRDRRSFHGPYTVQAGLPLNPMGRTGLRGRGSLSCFGPNHTLYPMVTRW 1355

Query: 179  KRDSSGNKIMHPVSGKHILQFVAIKRKDCGEWAIPGGMVDPGEKISATLKREFGEEALNS 238
            +R+  G      +  K +L+ + +K      WA+PGG  +PGE +   LKR   +E   S
Sbjct: 1356 RRNEDGAICRKSI--KKMLEVLVVKLPLSEHWALPGGSREPGEMLPRKLKRILRQEHWPS 1413

Query: 239  LQKTSAEKREIEEKLHKLFSQDHLVIYKGYVDDPRNTDNAWMETEAVNYHDETGEIMD-- 296
                        E L K      + +YKGY+DDPRNTDNAW+ET AV+ H +    ++  
Sbjct: 1414 F-----------ENLLKC----GMEVYKGYMDDPRNTDNAWIETVAVSVHFQDQNDVELN 1458

Query: 297  --NLMLEAGDDAGKVKWVDINDKLKLYASHSQFIKLVAEKRDAHW 339
              N  L A D    ++W  ++ ++ LYA+H   ++  A +  AH+
Sbjct: 1459 RLNSNLHACDSGASIRWQVVDRRIPLYANHKTLLQKAAAEFGAHY 1503


>gi|118026927 nudix (nucleoside diphosphate linked moiety X)-type
           motif 18 [Homo sapiens]
          Length = 323

 Score = 36.2 bits (82), Expect = 0.045
 Identities = 17/40 (42%), Positives = 23/40 (57%)

Query: 196 ILQFVAIKRKDCGEWAIPGGMVDPGEKISATLKREFGEEA 235
           +L     KR+  G W +P G ++PGE I   L+RE  EEA
Sbjct: 57  VLLIQEAKRECRGSWYLPAGRMEPGETIVEALQREVKEEA 96


>gi|17865632 mitochondrial tumor suppressor 1 isoform 5 [Homo
           sapiens]
          Length = 436

 Score = 33.5 bits (75), Expect = 0.29
 Identities = 34/130 (26%), Positives = 58/130 (44%), Gaps = 31/130 (23%)

Query: 220 GEKISATLKREFGEEALNSLQKT--------SAEKREIEEKLHKLFSQDHLVIYKGYVDD 271
           GE ++A+   E  E+A N LQ           AEK E E +L + +++++  +   Y++ 
Sbjct: 132 GELVTASTTCEKLEKARNELQTVYEAFVQQHQAEKTERENRLKEFYTREYEKLRDTYIE- 190

Query: 272 PRNTDNAWMETEAVNYHDETGEIMDNLMLEAGDDAGKVKWVDINDKLKLYASHSQFIKLV 331
                      EA  Y  +  E  DN  L A  +           KL++ ASHS+ ++L+
Sbjct: 191 -----------EAEKYKMQLQEQFDN--LNAAHE---------TSKLEIEASHSEKLELL 228

Query: 332 AEKRDAHWSE 341
            +  +A  SE
Sbjct: 229 KKAYEASLSE 238


>gi|50348611 mitochondrial tumor suppressor 1 isoform 1 [Homo sapiens]
          Length = 1270

 Score = 33.5 bits (75), Expect = 0.29
 Identities = 34/130 (26%), Positives = 58/130 (44%), Gaps = 31/130 (23%)

Query: 220  GEKISATLKREFGEEALNSLQKT--------SAEKREIEEKLHKLFSQDHLVIYKGYVDD 271
            GE ++A+   E  E+A N LQ           AEK E E +L + +++++  +   Y++ 
Sbjct: 966  GELVTASTTCEKLEKARNELQTVYEAFVQQHQAEKTERENRLKEFYTREYEKLRDTYIE- 1024

Query: 272  PRNTDNAWMETEAVNYHDETGEIMDNLMLEAGDDAGKVKWVDINDKLKLYASHSQFIKLV 331
                       EA  Y  +  E  DN  L A  +           KL++ ASHS+ ++L+
Sbjct: 1025 -----------EAEKYKMQLQEQFDN--LNAAHE---------TSKLEIEASHSEKLELL 1062

Query: 332  AEKRDAHWSE 341
             +  +A  SE
Sbjct: 1063 KKAYEASLSE 1072


>gi|50348617 mitochondrial tumor suppressor 1 isoform 2 [Homo sapiens]
          Length = 1216

 Score = 33.5 bits (75), Expect = 0.29
 Identities = 34/130 (26%), Positives = 58/130 (44%), Gaps = 31/130 (23%)

Query: 220  GEKISATLKREFGEEALNSLQKT--------SAEKREIEEKLHKLFSQDHLVIYKGYVDD 271
            GE ++A+   E  E+A N LQ           AEK E E +L + +++++  +   Y++ 
Sbjct: 912  GELVTASTTCEKLEKARNELQTVYEAFVQQHQAEKTERENRLKEFYTREYEKLRDTYIE- 970

Query: 272  PRNTDNAWMETEAVNYHDETGEIMDNLMLEAGDDAGKVKWVDINDKLKLYASHSQFIKLV 331
                       EA  Y  +  E  DN  L A  +           KL++ ASHS+ ++L+
Sbjct: 971  -----------EAEKYKMQLQEQFDN--LNAAHE---------TSKLEIEASHSEKLELL 1008

Query: 332  AEKRDAHWSE 341
             +  +A  SE
Sbjct: 1009 KKAYEASLSE 1018


>gi|50348626 mitochondrial tumor suppressor 1 isoform 4 [Homo
           sapiens]
          Length = 517

 Score = 33.5 bits (75), Expect = 0.29
 Identities = 34/130 (26%), Positives = 58/130 (44%), Gaps = 31/130 (23%)

Query: 220 GEKISATLKREFGEEALNSLQKT--------SAEKREIEEKLHKLFSQDHLVIYKGYVDD 271
           GE ++A+   E  E+A N LQ           AEK E E +L + +++++  +   Y++ 
Sbjct: 213 GELVTASTTCEKLEKARNELQTVYEAFVQQHQAEKTERENRLKEFYTREYEKLRDTYIE- 271

Query: 272 PRNTDNAWMETEAVNYHDETGEIMDNLMLEAGDDAGKVKWVDINDKLKLYASHSQFIKLV 331
                      EA  Y  +  E  DN  L A  +           KL++ ASHS+ ++L+
Sbjct: 272 -----------EAEKYKMQLQEQFDN--LNAAHE---------TSKLEIEASHSEKLELL 309

Query: 332 AEKRDAHWSE 341
            +  +A  SE
Sbjct: 310 KKAYEASLSE 319


>gi|163644333 zinc finger protein 397 opposite strand [Homo sapiens]
          Length = 494

 Score = 33.5 bits (75), Expect = 0.29
 Identities = 23/106 (21%), Positives = 43/106 (40%), Gaps = 1/106 (0%)

Query: 156 LVGRGLLGRWGPNHAADPIITRWKRDSSGNKIMHPVSGKHILQFVAIKRKDCGEWAIPGG 215
           +   G L     N    P+  + K ++  ++      G+ +   V + +++  E      
Sbjct: 149 MTSTGALKSLSLNSPVQPLENQCKTETQESQAFQERDGRMVAGKVLMAKQEIVECVASAA 208

Query: 216 MVDPGEKISATLKREFGEEALNSLQKTSAEK-REIEEKLHKLFSQD 260
           M+ PG+    T  +   EEAL  L  +  +K      K+ +L SQD
Sbjct: 209 MISPGKLPGETHSQRIAEEALGGLDNSKKQKGNAAGNKISQLPSQD 254


>gi|149363695 hypothetical protein LOC25943 [Homo sapiens]
          Length = 1177

 Score = 32.7 bits (73), Expect = 0.50
 Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 5/72 (6%)

Query: 199 FVAIKRKDCGEWAIPGGMVDPGEKISATLKREFGEEALNSLQKTSAEKREIEEKLHKLFS 258
           F+    K+CG W +   ++D  E   A   + +   AL + Q  SA +     K  +L  
Sbjct: 766 FLVTLHKECGRWMVYRQIMDSSECFHAAHFQRYLSSALEAQQNRSARQSAYIRKKTRL-- 823

Query: 259 QDHLVIYKGYVD 270
              LV+ +GY D
Sbjct: 824 ---LVVLQGYTD 832


>gi|156104908 myosin heavy chain 6 [Homo sapiens]
          Length = 1939

 Score = 32.3 bits (72), Expect = 0.65
 Identities = 16/39 (41%), Positives = 25/39 (64%), Gaps = 1/39 (2%)

Query: 221 EKISATLKREFGEEALNSLQKTSAEKREIEEKLHKLFSQ 259
           EK  AT+K EFG     +L+K+ A ++E+EEK+  L  +
Sbjct: 848 EKEMATMKEEFGR-IKETLEKSEARRKELEEKMVSLLQE 885


>gi|110611151 snurportin 1 [Homo sapiens]
          Length = 360

 Score = 30.8 bits (68), Expect = 1.9
 Identities = 23/68 (33%), Positives = 31/68 (45%), Gaps = 11/68 (16%)

Query: 85  VGWLVEWQDYKPVEYTAVSVLAGPRWADP--------QISESNFSPKFNEKDGHVERKSK 136
           VGWL   + Y   +   V+V AGP    P        QI E   S K   K+    + S+
Sbjct: 274 VGWL---RPYMVSDVLGVAVPAGPLTTKPDYAGHQLQQIMEHKKSQKEGMKEKLTHKASE 330

Query: 137 NGLYEIEN 144
           NG YE+E+
Sbjct: 331 NGHYELEH 338


>gi|110611149 snurportin 1 [Homo sapiens]
          Length = 360

 Score = 30.8 bits (68), Expect = 1.9
 Identities = 23/68 (33%), Positives = 31/68 (45%), Gaps = 11/68 (16%)

Query: 85  VGWLVEWQDYKPVEYTAVSVLAGPRWADP--------QISESNFSPKFNEKDGHVERKSK 136
           VGWL   + Y   +   V+V AGP    P        QI E   S K   K+    + S+
Sbjct: 274 VGWL---RPYMVSDVLGVAVPAGPLTTKPDYAGHQLQQIMEHKKSQKEGMKEKLTHKASE 330

Query: 137 NGLYEIEN 144
           NG YE+E+
Sbjct: 331 NGHYELEH 338


>gi|5031833 snurportin 1 [Homo sapiens]
          Length = 360

 Score = 30.8 bits (68), Expect = 1.9
 Identities = 23/68 (33%), Positives = 31/68 (45%), Gaps = 11/68 (16%)

Query: 85  VGWLVEWQDYKPVEYTAVSVLAGPRWADP--------QISESNFSPKFNEKDGHVERKSK 136
           VGWL   + Y   +   V+V AGP    P        QI E   S K   K+    + S+
Sbjct: 274 VGWL---RPYMVSDVLGVAVPAGPLTTKPDYAGHQLQQIMEHKKSQKEGMKEKLTHKASE 330

Query: 137 NGLYEIEN 144
           NG YE+E+
Sbjct: 331 NGHYELEH 338


>gi|98986453 myosin, heavy chain 3, skeletal muscle, embryonic [Homo
           sapiens]
          Length = 1940

 Score = 30.8 bits (68), Expect = 1.9
 Identities = 16/39 (41%), Positives = 26/39 (66%), Gaps = 1/39 (2%)

Query: 221 EKISATLKREFGEEALNSLQKTSAEKREIEEKLHKLFSQ 259
           EK  AT+K EF ++  + L K+ A+++E+EEKL  L  +
Sbjct: 847 EKEMATMKEEF-QKTKDELAKSEAKRKELEEKLVTLVQE 884


>gi|115527082 myosin, heavy chain 1, skeletal muscle, adult [Homo
           sapiens]
          Length = 1939

 Score = 30.8 bits (68), Expect = 1.9
 Identities = 16/39 (41%), Positives = 24/39 (61%), Gaps = 1/39 (2%)

Query: 221 EKISATLKREFGEEALNSLQKTSAEKREIEEKLHKLFSQ 259
           EK  A +K EF E+    L KT A+++E+EEK+  L  +
Sbjct: 850 EKEMANMKEEF-EKTKEELAKTEAKRKELEEKMVTLMQE 887


>gi|110611903 myosin, heavy polypeptide 4, skeletal muscle [Homo
           sapiens]
          Length = 1939

 Score = 30.8 bits (68), Expect = 1.9
 Identities = 16/39 (41%), Positives = 24/39 (61%), Gaps = 1/39 (2%)

Query: 221 EKISATLKREFGEEALNSLQKTSAEKREIEEKLHKLFSQ 259
           EK  A +K EF E+    L KT A+++E+EEK+  L  +
Sbjct: 850 EKEMANMKEEF-EKTKEELAKTEAKRKELEEKMVTLMQE 887


>gi|66773344 hypothetical protein LOC140710 [Homo sapiens]
          Length = 1016

 Score = 30.8 bits (68), Expect = 1.9
 Identities = 17/70 (24%), Positives = 36/70 (51%), Gaps = 9/70 (12%)

Query: 228 KREFGEEALNSLQKTSAEKREIEEKLHKLFSQDHLVIYKGYVD-------DPRNTDNAWM 280
           +R + +E L  +++   EK+++E+++ +L  Q+ L   +   D       +    DN+W 
Sbjct: 841 ERNWSQEKLQLVERLQGEKQQVEQQVKEL--QNRLSQLQKAADPWVLKHSELEKQDNSWK 898

Query: 281 ETEAVNYHDE 290
           ET +   HD+
Sbjct: 899 ETRSEKIHDK 908


>gi|239753314 PREDICTED: similar to RIKEN cDNA C230030N03 [Homo
           sapiens]
          Length = 1183

 Score = 30.4 bits (67), Expect = 2.5
 Identities = 22/75 (29%), Positives = 41/75 (54%), Gaps = 3/75 (4%)

Query: 58  KENSHNKARTSPYPGSKVERSQVPNEKVGWLVEWQDY-KPVEYTAVSVLAGPRWADPQIS 116
           KEN+H ++ +SP  G K E+S++        ++ +D   P + T VS+  GP    P  +
Sbjct: 857 KENTHERSPSSP-KGEK-EKSRLRQGSWRAFLKSKDAGSPKKPTLVSLPLGPEVLSPAET 914

Query: 117 ESNFSPKFNEKDGHV 131
           +S+   +  +K+G+V
Sbjct: 915 DSHCEERAEDKEGYV 929


>gi|87298939 hypothetical protein LOC131831 [Homo sapiens]
          Length = 663

 Score = 30.4 bits (67), Expect = 2.5
 Identities = 20/94 (21%), Positives = 42/94 (44%), Gaps = 10/94 (10%)

Query: 213 PGGMVDPGEKISATLKREFGEEALNSLQKTSAEKREIEEKLHKLFSQDHLVIYKGYVDDP 272
           P G  DPG+K     + E  EE     ++   E+ E+EE+  ++  ++  V+ +  V + 
Sbjct: 7   PSGFGDPGKKDQKESEEELEEE--EEEEEVEEEEEEVEEEEEEVEEEEEEVVEEELVGEE 64

Query: 273 R--------NTDNAWMETEAVNYHDETGEIMDNL 298
           +        + +  W  T+  +Y D+  ++   L
Sbjct: 65  QELEAPETFSEEYLWKVTDIGDYDDDFPDVRPRL 98


>gi|153945790 myosin, heavy chain 8, skeletal muscle, perinatal
           [Homo sapiens]
          Length = 1937

 Score = 30.4 bits (67), Expect = 2.5
 Identities = 15/39 (38%), Positives = 26/39 (66%), Gaps = 1/39 (2%)

Query: 221 EKISATLKREFGEEALNSLQKTSAEKREIEEKLHKLFSQ 259
           EK  AT+K EF ++  + L K+ A+++E+EEK+  L  +
Sbjct: 849 EKEMATMKEEF-QKTKDELAKSEAKRKELEEKMVTLLKE 886


>gi|53759148 retinoblastoma binding protein 5 [Homo sapiens]
          Length = 538

 Score = 30.4 bits (67), Expect = 2.5
 Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 2/63 (3%)

Query: 89  VEWQDYKPVEYTAVSVLAGPRWADPQISE-SNFSPKFNEKDGHVERKSKNGLYEIENGRP 147
           V W   +P+   ++S      WA  Q+   S F+P F E D +VE + +   ++IE+   
Sbjct: 301 VAWHPVRPI-IASISSGVVSIWAQNQVENWSAFAPDFKELDENVEYEERESEFDIEDEDK 359

Query: 148 RNP 150
             P
Sbjct: 360 SEP 362


>gi|153791586 myosin, heavy chain 2, skeletal muscle, adult [Homo
           sapiens]
          Length = 1941

 Score = 30.0 bits (66), Expect = 3.2
 Identities = 15/39 (38%), Positives = 26/39 (66%), Gaps = 1/39 (2%)

Query: 221 EKISATLKREFGEEALNSLQKTSAEKREIEEKLHKLFSQ 259
           EK  AT+K EF ++  + L K+ A+++E+EEK+  L  +
Sbjct: 852 EKEMATMKEEF-QKIKDELAKSEAKRKELEEKMVTLLKE 889


>gi|153792663 myosin, heavy chain 2, skeletal muscle, adult [Homo
           sapiens]
          Length = 1941

 Score = 30.0 bits (66), Expect = 3.2
 Identities = 15/39 (38%), Positives = 26/39 (66%), Gaps = 1/39 (2%)

Query: 221 EKISATLKREFGEEALNSLQKTSAEKREIEEKLHKLFSQ 259
           EK  AT+K EF ++  + L K+ A+++E+EEK+  L  +
Sbjct: 852 EKEMATMKEEF-QKIKDELAKSEAKRKELEEKMVTLLKE 889


>gi|42476009 highly divergent homeobox [Homo sapiens]
          Length = 690

 Score = 29.6 bits (65), Expect = 4.2
 Identities = 19/73 (26%), Positives = 35/73 (47%), Gaps = 3/73 (4%)

Query: 55  NGSKENSHNKARTSPYPGSKVERSQVPNEK---VGWLVEWQDYKPVEYTAVSVLAGPRWA 111
           +GS   + N++ T P PG  +  SQ+ N +      L + ++Y     T++   +   ++
Sbjct: 329 SGSSLRAENQSTTLPGPGRNMPNSQMVNIRDMSDNVLYQNRNYHLTPRTSLHTASSTMYS 388

Query: 112 DPQISESNFSPKF 124
           +     SNFSP F
Sbjct: 389 NTNPLRSNFSPHF 401


>gi|205277396 dynactin 1 isoform 4 [Homo sapiens]
          Length = 1139

 Score = 29.3 bits (64), Expect = 5.5
 Identities = 32/133 (24%), Positives = 64/133 (48%), Gaps = 11/133 (8%)

Query: 216 MVDPGEKIS-ATLKREFGEEALNSLQKTSAEKREIEEKLHKLFSQDHLVIYKGYVDDPRN 274
           M D  + I  ATL +E  EE   SLQ+   E   ++E++ +L +   L I K  +++ + 
Sbjct: 163 MADTADAIEMATLDKEMAEERAESLQQ---EVEALKERVDELTTD--LEILKAEIEE-KG 216

Query: 275 TDNAWMETEAVNYHDETGEIMDNLM-LEAGDDAGKVKWVDINDKLKLYASHSQFIKLVAE 333
           +D A    +     ++   + D L+ +     + K + V +    KL    +Q +++V +
Sbjct: 217 SDGAASSYQLKQLEEQNARLKDALVRMRDLSSSEKQEHVKLQ---KLMEKKNQELEVVRQ 273

Query: 334 KRDAHWSEDSEAD 346
           +R+    E S+A+
Sbjct: 274 QRERLQEELSQAE 286


>gi|205277392 dynactin 1 isoform 3 [Homo sapiens]
          Length = 1253

 Score = 29.3 bits (64), Expect = 5.5
 Identities = 32/133 (24%), Positives = 64/133 (48%), Gaps = 11/133 (8%)

Query: 216 MVDPGEKIS-ATLKREFGEEALNSLQKTSAEKREIEEKLHKLFSQDHLVIYKGYVDDPRN 274
           M D  + I  ATL +E  EE   SLQ+   E   ++E++ +L +   L I K  +++ + 
Sbjct: 277 MADTADAIEMATLDKEMAEERAESLQQ---EVEALKERVDELTTD--LEILKAEIEE-KG 330

Query: 275 TDNAWMETEAVNYHDETGEIMDNLM-LEAGDDAGKVKWVDINDKLKLYASHSQFIKLVAE 333
           +D A    +     ++   + D L+ +     + K + V +    KL    +Q +++V +
Sbjct: 331 SDGAASSYQLKQLEEQNARLKDALVRMRDLSSSEKQEHVKLQ---KLMEKKNQELEVVRQ 387

Query: 334 KRDAHWSEDSEAD 346
           +R+    E S+A+
Sbjct: 388 QRERLQEELSQAE 400


>gi|13259508 dynactin 1 isoform 2 [Homo sapiens]
          Length = 1144

 Score = 29.3 bits (64), Expect = 5.5
 Identities = 32/133 (24%), Positives = 64/133 (48%), Gaps = 11/133 (8%)

Query: 216 MVDPGEKIS-ATLKREFGEEALNSLQKTSAEKREIEEKLHKLFSQDHLVIYKGYVDDPRN 274
           M D  + I  ATL +E  EE   SLQ+   E   ++E++ +L +   L I K  +++ + 
Sbjct: 163 MADTADAIEMATLDKEMAEERAESLQQ---EVEALKERVDELTTD--LEILKAEIEE-KG 216

Query: 275 TDNAWMETEAVNYHDETGEIMDNLM-LEAGDDAGKVKWVDINDKLKLYASHSQFIKLVAE 333
           +D A    +     ++   + D L+ +     + K + V +    KL    +Q +++V +
Sbjct: 217 SDGAASSYQLKQLEEQNARLKDALVRMRDLSSSEKQEHVKLQ---KLMEKKNQELEVVRQ 273

Query: 334 KRDAHWSEDSEAD 346
           +R+    E S+A+
Sbjct: 274 QRERLQEELSQAE 286


>gi|13259510 dynactin 1 isoform 1 [Homo sapiens]
          Length = 1278

 Score = 29.3 bits (64), Expect = 5.5
 Identities = 32/133 (24%), Positives = 64/133 (48%), Gaps = 11/133 (8%)

Query: 216 MVDPGEKIS-ATLKREFGEEALNSLQKTSAEKREIEEKLHKLFSQDHLVIYKGYVDDPRN 274
           M D  + I  ATL +E  EE   SLQ+   E   ++E++ +L +   L I K  +++ + 
Sbjct: 297 MADTADAIEMATLDKEMAEERAESLQQ---EVEALKERVDELTTD--LEILKAEIEE-KG 350

Query: 275 TDNAWMETEAVNYHDETGEIMDNLM-LEAGDDAGKVKWVDINDKLKLYASHSQFIKLVAE 333
           +D A    +     ++   + D L+ +     + K + V +    KL    +Q +++V +
Sbjct: 351 SDGAASSYQLKQLEEQNARLKDALVRMRDLSSSEKQEHVKLQ---KLMEKKNQELEVVRQ 407

Query: 334 KRDAHWSEDSEAD 346
           +R+    E S+A+
Sbjct: 408 QRERLQEELSQAE 420


>gi|110624781 myosin, heavy polypeptide 13, skeletal muscle [Homo
           sapiens]
          Length = 1938

 Score = 29.3 bits (64), Expect = 5.5
 Identities = 32/120 (26%), Positives = 55/120 (45%), Gaps = 27/120 (22%)

Query: 221 EKISATLKREFGEEALNSLQKTSAEKREIEEKLHKLFSQDHLVIYKGYVDDPRNTDNAWM 280
           EK  AT+K +F E     L ++ A ++E+EEK+  L  +             +N     +
Sbjct: 850 EKEMATMKEDF-ERTKEELARSEARRKELEEKMVSLLQE-------------KNDLQLQV 895

Query: 281 ETEAVNYHDE----TGEIMDNLMLEAGDDAGKVKWVDINDKLKLYASHSQFIKLVAEKRD 336
           ++E  N  D      G I   ++LEA     KVK  ++ ++L+         +LVA+KR+
Sbjct: 896 QSETENLMDAEERCEGLIKSKILLEA-----KVK--ELTERLE--EEEEMNSELVAKKRN 946


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.314    0.131    0.396 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,289,098
Number of Sequences: 37866
Number of extensions: 672593
Number of successful extensions: 1440
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 39
Number of HSP's that attempted gapping in prelim test: 1431
Number of HSP's gapped (non-prelim): 44
length of query: 350
length of database: 18,247,518
effective HSP length: 103
effective length of query: 247
effective length of database: 14,347,320
effective search space: 3543788040
effective search space used: 3543788040
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.