Guide to the Human Genome
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Name: C20orf194 Sequence: fasta or formatted (1177aa) NCBI GI: 149363695
Description:

hypothetical protein LOC25943

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.8         68           3
 C cysteine            2.2         26           1
 D aspartate           4.2         50           2
 E glutamate           6.5         77           2
 F phenylalanine       5.8         68           2
 G glycine             5.8         68           2
 H histidine           3.2         38           1
 I isoleucine          5.3         62           3
 K lysine              4.8         57           2
 L leucine            10.1        119           2
 M methionine          2.2         26           1
 N asparagine          3.7         44           2
 P proline             4.7         55           3
 Q glutamine           5.1         60           2
 R arginine            4.4         52           2
 S serine             11.0        129           2
 T threonine           4.4         52           2
 V valine              6.3         74           2
 W tryptophan          1.0         12           1
 Y tyrosine            3.4         40           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC25943 
AHI1                  0.004   Abelson helper integration site 1 isoform b 
AHI1                  0.004   Abelson helper integration site 1 isoform a 
AHI1                  0.004   Abelson helper integration site 1 isoform a 
AHI1                  0.004   Abelson helper integration site 1 isoform a 
CHL1                  0.003   cell adhesion molecule with homology to L1CAM precur...
NUDT9                 0.003   nudix-type motif 9 isoform b 
NUDT9                 0.003   nudix-type motif 9 isoform a 
C9orf96               0.003   hypothetical protein LOC169436 
OSCP1                 0.003   oxidored-nitro domain-containing protein isoform 1 [...
ASTN2                 0.003   astrotactin 2 isoform c 
ASTN2                 0.003   astrotactin 2 isoform b 
ASTN2                 0.003   astrotactin 2 isoform a 
LOC100291924          0.003   PREDICTED: similar to astrotactin 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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