Guide to the Human Genome
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Name: ZNF397OS Sequence: fasta or formatted (494aa) NCBI GI: 163644333
Description:

zinc finger protein 397 opposite strand

Referenced in:

Kruppel-related Zinc Finger Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.7         28           2
 C cysteine            4.0         20           2
 D aspartate           2.4         12           1
 E glutamate          12.3         61           3
 F phenylalanine       3.6         18           1
 G glycine             6.5         32           2
 H histidine           4.7         23           1
 I isoleucine          4.0         20           1
 K lysine              6.1         30           2
 L leucine             8.1         40           2
 M methionine          2.0         10           1
 N asparagine          2.6         13           1
 P proline             3.6         18           1
 Q glutamine           7.3         36           2
 R arginine            6.9         34           2
 S serine              9.1         45           2
 T threonine           4.7         23           2
 V valine              3.4         17           2
 W tryptophan          0.8          4           1
 Y tyrosine            2.0         10           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   zinc finger protein 397 opposite strand 
ZNF397                0.433   zinc finger protein 397 isoform 1 
ZSCAN12               0.405   zinc finger and SCAN domain containing 12 
ZSCAN21               0.397   zinc finger protein 38 
ZNF165                0.384   zinc finger protein 165 
ZKSCAN3               0.383   zinc finger with KRAB and SCAN domains 3 
ZNF323                0.378   zinc finger protein 323 
ZNF323                0.378   zinc finger protein 323 
ZNF323                0.378   zinc finger protein 323 
ZNF323                0.378   zinc finger protein 323 
ZKSCAN4               0.368   zinc finger with KRAB and SCAN domains 4 
ZNF187                0.359   zinc finger protein 187 isoform b 
ZNF187                0.358   zinc finger protein 187 isoform a 
ZNF192                0.341   zinc finger protein 192 
ZSCAN2                0.336   zinc finger protein 29 isoform 1 
ZNF394                0.336   zinc finger protein 394 
ZSCAN23               0.326   zinc finger protein 390 
ZNF232                0.317   zinc finger protein 232 
ZNF167                0.305   zinc finger protein 167 isoform 1 
ZNF3                  0.298   zinc finger protein 3 isoform 2 
ZNF135                0.294   zinc finger protein 135 
ZNF345                0.289   zinc finger protein 345 
LOC344065             0.287   PREDICTED: similar to zinc finger protein 570 [Homo...
LOC344065             0.287   PREDICTED: similar to zinc finger protein 570 [Homo...
LOC344065             0.287   PREDICTED: similar to zinc finger protein 570 [Homo...
ZNF551                0.287   zinc finger protein 551 
ZNF383                0.287   zinc finger protein 383 
ZNF420                0.284   zinc finger protein 420 
ZNF180                0.284   zinc finger protein 180 
ZFP3                  0.284   zinc finger protein-3 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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