Guide to the Human Genome
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Name: TRPM2 Sequence: fasta or formatted (1503aa) NCBI GI: 4507689
Description:

transient receptor potential cation channel, subfamily M, member 2

Referenced in:

Calcium and TRP Cation Channels
Neutrophils, Eosinophils, and Basophils

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.5         98           3
 C cysteine            1.9         29           1
 D aspartate           5.0         75           2
 E glutamate           6.6         99           3
 F phenylalanine       4.7         71           3
 G glycine             5.8         87           2
 H histidine           3.1         46           2
 I isoleucine          4.9         74           3
 K lysine              5.7         85           3
 L leucine            11.5        173           3
 M methionine          2.1         31           2
 N asparagine          3.4         51           2
 P proline             5.3         80           3
 Q glutamine           4.8         72           2
 R arginine            5.9         89           3
 S serine              5.7         86           3
 T threonine           5.1         77           2
 V valine              7.2        108           3
 W tryptophan          2.2         33           2
 Y tyrosine            2.6         39           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   transient receptor potential cation channel, subfamil... 
TRPM8                 0.267   transient receptor potential cation channel, subfam...
TRPM5                 0.241   transient receptor potential cation channel, subfami...
TRPM4                 0.229   transient receptor potential cation channel, subfami...
TRPM3                 0.177   transient receptor potential cation channel, subfam...
TRPM3                 0.165   transient receptor potential cation channel, subfam...
TRPM3                 0.165   transient receptor potential cation channel, subfam...
TRPM3                 0.164   transient receptor potential cation channel, subfam...
TRPM3                 0.164   transient receptor potential cation channel, subfam...
TRPM3                 0.163   transient receptor potential cation channel, subfam...
TRPM3                 0.163   transient receptor potential cation channel, subfam...
TRPM7                 0.158   transient receptor potential cation channel, subfam...
TRPM6                 0.143   transient receptor potential cation channel, subfami...
TRPM1                 0.089   transient receptor potential cation channel, subfami...
TRPM3                 0.055   transient receptor potential cation channel, subfami...
TRPM3                 0.052   transient receptor potential cation channel, subfami...
NUDT9                 0.046   nudix-type motif 9 isoform b 
NUDT9                 0.046   nudix-type motif 9 isoform a 
TRPC5                 0.022   transient receptor potential cation channel, subfamil...
TRPC4                 0.022   transient receptor potential cation channel, subfam...
TRPC4                 0.021   transient receptor potential cation channel, subfamil...
TRPC3                 0.021   transient receptor potential cation channel, subfam...
TRPC3                 0.021   transient receptor potential cation channel, subfamil...
TRPC4                 0.020   transient receptor potential cation channel, subfam...
TRPC4                 0.020   transient receptor potential cation channel, subfam...
TRPC1                 0.019   transient receptor potential cation channel, subfamil...
TRPC7                 0.018   transient receptor potential cation channel, subfamil...
TRPC4                 0.018   transient receptor potential cation channel, subfam...
TRPC6                 0.016   transient receptor potential cation channel, subfamil...
TRPC4                 0.015   transient receptor potential cation channel, subfam...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
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