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Search of human proteins with 4557673
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|4557673 pancreatic and duodenal homeobox 1 [Homo sapiens]
(283 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|4557673 pancreatic and duodenal homeobox 1 [Homo sapiens] 602 e-172
gi|24497513 homeobox A3 isoform a [Homo sapiens] 128 5e-30
gi|13562112 homeobox A3 isoform a [Homo sapiens] 128 5e-30
gi|13273315 homeobox B4 [Homo sapiens] 124 7e-29
gi|4504465 homeobox B2 [Homo sapiens] 114 1e-25
gi|19923391 homeobox D3 [Homo sapiens] 112 4e-25
gi|148613882 homeobox A4 [Homo sapiens] 112 4e-25
gi|23397672 homeobox D4 [Homo sapiens] 108 4e-24
gi|24497515 homeobox A3 isoform b [Homo sapiens] 108 7e-24
gi|24497538 homeobox C4 [Homo sapiens] 106 3e-23
gi|24497540 homeobox C4 [Homo sapiens] 106 3e-23
gi|15029506 homeobox D8 [Homo sapiens] 104 1e-22
gi|84570137 homeobox B3 [Homo sapiens] 104 1e-22
gi|33457326 GS homeobox 1 [Homo sapiens] 102 4e-22
gi|89257348 homeo box HB9 [Homo sapiens] 100 1e-21
gi|24497517 homeobox A5 [Homo sapiens] 98 9e-21
gi|121114296 caudal type homeobox 1 [Homo sapiens] 97 2e-20
gi|10140847 homeobox A2 [Homo sapiens] 97 2e-20
gi|24497544 homeobox C6 isoform 2 [Homo sapiens] 97 2e-20
gi|4758554 homeobox C6 isoform 1 [Homo sapiens] 97 2e-20
gi|24497556 homeobox A7 [Homo sapiens] 96 5e-20
gi|11321638 homeobox C5 [Homo sapiens] 96 5e-20
gi|4504469 homeobox B5 [Homo sapiens] 95 8e-20
gi|85068580 homeobox B7 [Homo sapiens] 94 1e-19
gi|13273317 homeobox B8 [Homo sapiens] 94 2e-19
gi|13489077 homeobox A6 [Homo sapiens] 91 1e-18
gi|12056969 homeobox C8 [Homo sapiens] 91 1e-18
gi|116805350 homeo box (H6 family) 1 [Homo sapiens] 90 2e-18
gi|18959212 GS homeobox 2 [Homo sapiens] 89 3e-18
gi|5031757 T-cell leukemia homeobox 1 [Homo sapiens] 89 4e-18
>gi|4557673 pancreatic and duodenal homeobox 1 [Homo sapiens]
Length = 283
Score = 602 bits (1552), Expect = e-172
Identities = 283/283 (100%), Positives = 283/283 (100%)
Query: 1 MNGEEQYYAATQLYKDPCAFQRGPAPEFSASPPACLYMGRQPPPPPPHPFPGALGALEQG 60
MNGEEQYYAATQLYKDPCAFQRGPAPEFSASPPACLYMGRQPPPPPPHPFPGALGALEQG
Sbjct: 1 MNGEEQYYAATQLYKDPCAFQRGPAPEFSASPPACLYMGRQPPPPPPHPFPGALGALEQG 60
Query: 61 SPPDISPYEVPPLADDPAVAHLHHHLPAQLALPHPPAGPFPEGAEPGVLEEPNRVQLPFP 120
SPPDISPYEVPPLADDPAVAHLHHHLPAQLALPHPPAGPFPEGAEPGVLEEPNRVQLPFP
Sbjct: 61 SPPDISPYEVPPLADDPAVAHLHHHLPAQLALPHPPAGPFPEGAEPGVLEEPNRVQLPFP 120
Query: 121 WMKSTKAHAWKGQWAGGAYAAEPEENKRTRTAYTRAQLLELEKEFLFNKYISRPRRVELA 180
WMKSTKAHAWKGQWAGGAYAAEPEENKRTRTAYTRAQLLELEKEFLFNKYISRPRRVELA
Sbjct: 121 WMKSTKAHAWKGQWAGGAYAAEPEENKRTRTAYTRAQLLELEKEFLFNKYISRPRRVELA 180
Query: 181 VMLNLTERHIKIWFQNRRMKWKKEEDKKRGGGTAVGGGGVAEPEQDCAVTSGEELLALPP 240
VMLNLTERHIKIWFQNRRMKWKKEEDKKRGGGTAVGGGGVAEPEQDCAVTSGEELLALPP
Sbjct: 181 VMLNLTERHIKIWFQNRRMKWKKEEDKKRGGGTAVGGGGVAEPEQDCAVTSGEELLALPP 240
Query: 241 PPPPGGAVPPAAPVAAREGRLPPGLSASPQPSSVAPRRPQEPR 283
PPPPGGAVPPAAPVAAREGRLPPGLSASPQPSSVAPRRPQEPR
Sbjct: 241 PPPPGGAVPPAAPVAAREGRLPPGLSASPQPSSVAPRRPQEPR 283
>gi|24497513 homeobox A3 isoform a [Homo sapiens]
Length = 443
Score = 128 bits (322), Expect = 5e-30
Identities = 105/324 (32%), Positives = 136/324 (41%), Gaps = 67/324 (20%)
Query: 2 NGEEQYYAAT-------QLYKDPCAFQR----GPAPEFSASPPACLYMGRQPPPPPPHPF 50
N +Q Y A+ + ++ C+ Q G P+ ACL PP PP
Sbjct: 27 NANQQPYPASAALGADGEYHRPACSLQSPSSAGGHPKAHELSEACLRTLSAPPSQPP--- 83
Query: 51 PGALGALEQGSPPDISPYEVPPLADDPAVAHLHHHLPAQLALPHPPAGPFPEGAEPG--- 107
+LG PP P PP P A Q P P A P P A P
Sbjct: 84 --SLGEPPLHPPP---PQAAPPAPQPPQPA-------PQPPAPTPAAPPPPSSASPPQNA 131
Query: 108 -------------VLEEPNRVQLPFPWMKSTKAHAWKG--------QWAGGAYAAEPEEN 146
+L P + FPWMK ++ + + AG +
Sbjct: 132 SNNPTPANAAKSPLLNSPTVAKQIFPWMKESRQNTKQKTSSSSSGESCAGDKSPPGQASS 191
Query: 147 KRTRTAYTRAQLLELEKEFLFNKYISRPRRVELAVMLNLTERHIKIWFQNRRMKWKKEED 206
KR RTAYT AQL+ELEKEF FN+Y+ RPRRVE+A +LNLTER IKIWFQNRRMK+KK++
Sbjct: 192 KRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKDQ- 250
Query: 207 KKRGGGTAVGGGGVAEPEQDCAVTSGEELLAL---------PPPPPPGGAVPPAAPVAAR 257
+G G GG + +G L ++ P PP + PP
Sbjct: 251 --KGKGMLTSSGGQSPSRSPVPPGAGGYLNSMHSLVNSVPYEPQSPPPFSKPPQGTYG-- 306
Query: 258 EGRLPPGLSASPQPSSVAPRRPQE 281
LPP + PS P PQ+
Sbjct: 307 ---LPPASYPASLPSCAPPPPPQK 327
Score = 28.9 bits (63), Expect = 5.3
Identities = 18/50 (36%), Positives = 21/50 (42%), Gaps = 5/50 (10%)
Query: 236 LALPPPPPPGGAVPPA---APVAAREGRLPPGLSASPQPSSVAPRRPQEP 282
L+ PP PP PP P AA PP +PQP + P P P
Sbjct: 75 LSAPPSQPPSLGEPPLHPPPPQAAPPAPQPP--QPAPQPPAPTPAAPPPP 122
Score = 28.1 bits (61), Expect = 9.1
Identities = 17/45 (37%), Positives = 20/45 (44%), Gaps = 7/45 (15%)
Query: 24 PAPEFSASPPACLYMGRQPPPPPPHPFPGALGALEQGSPPDISPY 68
P + AS P+C PPPPP A GA G PD P+
Sbjct: 308 PPASYPASLPSCA------PPPPPQKRYTAAGA-GAGGTPDYDPH 345
>gi|13562112 homeobox A3 isoform a [Homo sapiens]
Length = 443
Score = 128 bits (322), Expect = 5e-30
Identities = 105/324 (32%), Positives = 136/324 (41%), Gaps = 67/324 (20%)
Query: 2 NGEEQYYAAT-------QLYKDPCAFQR----GPAPEFSASPPACLYMGRQPPPPPPHPF 50
N +Q Y A+ + ++ C+ Q G P+ ACL PP PP
Sbjct: 27 NANQQPYPASAALGADGEYHRPACSLQSPSSAGGHPKAHELSEACLRTLSAPPSQPP--- 83
Query: 51 PGALGALEQGSPPDISPYEVPPLADDPAVAHLHHHLPAQLALPHPPAGPFPEGAEPG--- 107
+LG PP P PP P A Q P P A P P A P
Sbjct: 84 --SLGEPPLHPPP---PQAAPPAPQPPQPA-------PQPPAPTPAAPPPPSSASPPQNA 131
Query: 108 -------------VLEEPNRVQLPFPWMKSTKAHAWKG--------QWAGGAYAAEPEEN 146
+L P + FPWMK ++ + + AG +
Sbjct: 132 SNNPTPANAAKSPLLNSPTVAKQIFPWMKESRQNTKQKTSSSSSGESCAGDKSPPGQASS 191
Query: 147 KRTRTAYTRAQLLELEKEFLFNKYISRPRRVELAVMLNLTERHIKIWFQNRRMKWKKEED 206
KR RTAYT AQL+ELEKEF FN+Y+ RPRRVE+A +LNLTER IKIWFQNRRMK+KK++
Sbjct: 192 KRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKDQ- 250
Query: 207 KKRGGGTAVGGGGVAEPEQDCAVTSGEELLAL---------PPPPPPGGAVPPAAPVAAR 257
+G G GG + +G L ++ P PP + PP
Sbjct: 251 --KGKGMLTSSGGQSPSRSPVPPGAGGYLNSMHSLVNSVPYEPQSPPPFSKPPQGTYG-- 306
Query: 258 EGRLPPGLSASPQPSSVAPRRPQE 281
LPP + PS P PQ+
Sbjct: 307 ---LPPASYPASLPSCAPPPPPQK 327
Score = 28.9 bits (63), Expect = 5.3
Identities = 18/50 (36%), Positives = 21/50 (42%), Gaps = 5/50 (10%)
Query: 236 LALPPPPPPGGAVPPA---APVAAREGRLPPGLSASPQPSSVAPRRPQEP 282
L+ PP PP PP P AA PP +PQP + P P P
Sbjct: 75 LSAPPSQPPSLGEPPLHPPPPQAAPPAPQPP--QPAPQPPAPTPAAPPPP 122
Score = 28.1 bits (61), Expect = 9.1
Identities = 17/45 (37%), Positives = 20/45 (44%), Gaps = 7/45 (15%)
Query: 24 PAPEFSASPPACLYMGRQPPPPPPHPFPGALGALEQGSPPDISPY 68
P + AS P+C PPPPP A GA G PD P+
Sbjct: 308 PPASYPASLPSCA------PPPPPQKRYTAAGA-GAGGTPDYDPH 345
>gi|13273315 homeobox B4 [Homo sapiens]
Length = 251
Score = 124 bits (312), Expect = 7e-29
Identities = 79/193 (40%), Positives = 96/193 (49%), Gaps = 27/193 (13%)
Query: 34 ACLYMGRQPPPPPPHPFPGALGALEQGSPPDISPYEVPPLADDPAVAHLHHHLPAQLALP 93
AC G PPPPPP P P PP +SP P + A + P
Sbjct: 67 ACRDPGPPPPPPPPPPPP---------PPPGLSPRAPAPPPAGALLPEPGQRCEAVSSSP 117
Query: 94 HPPA---GPFPEGAEPGVLEEPNRVQLPFPWMKSTKAHAWKGQWAGGAYAAEPEENKRTR 150
PP P +EP + +PWM+ +AGG E KR+R
Sbjct: 118 PPPPCAQNPLHPSPSHSACKEP----VVYPWMRKVHVSTVNPNYAGG-------EPKRSR 166
Query: 151 TAYTRAQLLELEKEFLFNKYISRPRRVELAVMLNLTERHIKIWFQNRRMKWKKE----ED 206
TAYTR Q+LELEKEF +N+Y++R RRVE+A L L+ER IKIWFQNRRMKWKK+
Sbjct: 167 TAYTRQQVLELEKEFHYNRYLTRRRRVEIAHALCLSERQIKIWFQNRRMKWKKDHKLPNT 226
Query: 207 KKRGGGTAVGGGG 219
K R GG A GG
Sbjct: 227 KIRSGGAAGSAGG 239
Score = 31.6 bits (70), Expect = 0.82
Identities = 19/51 (37%), Positives = 23/51 (45%), Gaps = 8/51 (15%)
Query: 239 PPPPPPGGAVPPAAPVAAREGRLPP-------GLSASPQPSSVAPRRPQEP 282
PPPPPP + P AP G L P +S+SP P A + P P
Sbjct: 80 PPPPPPPPGLSPRAPAPPPAGALLPEPGQRCEAVSSSPPPPPCA-QNPLHP 129
Score = 30.8 bits (68), Expect = 1.4
Identities = 13/33 (39%), Positives = 17/33 (51%)
Query: 239 PPPPPPGGAVPPAAPVAAREGRLPPGLSASPQP 271
PPPPPP PP ++ R PP + P+P
Sbjct: 74 PPPPPPPPPPPPPPGLSPRAPAPPPAGALLPEP 106
>gi|4504465 homeobox B2 [Homo sapiens]
Length = 356
Score = 114 bits (284), Expect = 1e-25
Identities = 96/282 (34%), Positives = 117/282 (41%), Gaps = 67/282 (23%)
Query: 45 PPPHPFPGALGALEQGSPPDISPYEVPPLADDPAVAHLHHHLPAQLALPHPPAGPFPEGA 104
PPP PF +L+ G+ P D PA LP PP P P A
Sbjct: 44 PPPPPFEQTFPSLQPGASTLQRPRSQKRAEDGPA-------------LPPPPPPPLP--A 88
Query: 105 EPGVLEEPNRVQLPFPWMKSTKAHAWKGQWAGG---AYAAEPEEN--------------- 146
P E FPWMK K+ Q A A +A P
Sbjct: 89 APPAPE--------FPWMKEKKSAKKPSQSATSPSPAASAVPASGVGSPADGLGLPEAGG 140
Query: 147 ---KRTRTAYTRAQLLELEKEFLFNKYISRPRRVELAVMLNLTERHIKIWFQNRRMKWKK 203
+R RTAYT QLLELEKEF FNKY+ RPRRVE+A +L+LTER +K+WFQNRRMK K+
Sbjct: 141 GGARRLRTAYTNTQLLELEKEFHFNKYLCRPRRVEIAALLDLTERQVKVWFQNRRMKHKR 200
Query: 204 EEDKKR--GGGTAVGGG--GVAEPEQDCAVTSGE--------ELLALPPPPPPGGAVPPA 251
+ + G A G + +P ++ A + G E PP PG
Sbjct: 201 QTQHREPPDGEPACPGALEDICDPAEEPAASPGGPSASRAAWEACCHPPEVVPGALSADP 260
Query: 252 APVAAR-EG----------RLPPGLSASPQPSSVAPRRPQEP 282
P+A R EG R GL P P V R P
Sbjct: 261 RPLAVRLEGAGASSPGCALRGAGGLEPGPLPEDVFSGRQDSP 302
>gi|19923391 homeobox D3 [Homo sapiens]
Length = 432
Score = 112 bits (280), Expect = 4e-25
Identities = 93/258 (36%), Positives = 122/258 (47%), Gaps = 64/258 (24%)
Query: 31 SPPACLYMGRQPPPPPPHPFPGALGALEQGSPPDISPYEVPPLADDPAVAHLHHHLPAQL 90
S P L +QPP PPP PP P P +P +PA+
Sbjct: 105 SQPPGLNSEQQPPQPPP--------------PPPTLP---PSSPTNPGGG-----VPAK- 141
Query: 91 ALPHPPAGPFPEGAEPGVLEEPNRVQLPFPWMKSTKAHA-WKGQWAGGAYAAEPEE---- 145
P GP + + ++ FPWMK ++ ++ K A + E +
Sbjct: 142 ---KPKGGPNASSSSATISKQI------FPWMKESRQNSKQKNSCATAGESCEDKSPPGP 192
Query: 146 -NKRTRTAYTRAQLLELEKEFLFNKYISRPRRVELAVMLNLTERHIKIWFQNRRMKWKKE 204
+KR RTAYT AQL+ELEKEF FN+Y+ RPRRVE+A +LNLTER IKIWFQNRRMK+KK+
Sbjct: 193 ASKRVRTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKD 252
Query: 205 EDKKRGGGTAVGGGGVAEPEQDCAVTSGEELLALPPPPPPGGAVPPAAPVAAREGRLP-- 262
+ K G + P S PP GG AA A G+LP
Sbjct: 253 QKAK---------GILHSPASQSPERS----------PPLGG----AAGHVAYSGQLPPV 289
Query: 263 PGLS-ASPQPSSVAPRRP 279
PGL+ +P P + A +P
Sbjct: 290 PGLAYDAPSPPAFAKSQP 307
>gi|148613882 homeobox A4 [Homo sapiens]
Length = 320
Score = 112 bits (280), Expect = 4e-25
Identities = 79/214 (36%), Positives = 100/214 (46%), Gaps = 33/214 (15%)
Query: 17 PCAFQRGPAPEFSASPPACLYMGRQPPPPPPHPFPG--ALGALEQGSPPDISPYEVPPLA 74
P ++ G +P P QPP P G A L+ PP + P VPP A
Sbjct: 101 PYGYRGGASPGRPPQP-------EQPPAQAKGPAHGLHASHVLQPQLPPPLQPRAVPPAA 153
Query: 75 DDPAVAHLHHHLPAQLALPHPPAGPFPEG-----AEPGVLEEPNRVQLPFPWMKSTKAHA 129
A A P PAG A+ L + + +PWMK A
Sbjct: 154 P--------RRCEAAPATPGVPAGGSAPACPLLLADKSPLGLKGKEPVVYPWMKKIHVSA 205
Query: 130 WKGQWAGGAYAAEPEENKRTRTAYTRAQLLELEKEFLFNKYISRPRRVELAVMLNLTERH 189
+ GG E KR+RTAYTR Q+LELEKEF FN+Y++R RR+E+A L L+ER
Sbjct: 206 VNPSYNGG-------EPKRSRTAYTRQQVLELEKEFHFNRYLTRRRRIEIAHTLCLSERQ 258
Query: 190 IKIWFQNRRMKWKKE----EDKKRGGGTAVGGGG 219
+KIWFQNRRMKWKK+ K R +A G
Sbjct: 259 VKIWFQNRRMKWKKDHKLPNTKMRSSNSASASAG 292
Score = 28.1 bits (61), Expect = 9.1
Identities = 28/83 (33%), Positives = 33/83 (39%), Gaps = 15/83 (18%)
Query: 209 RGGGTAVGGGGVAEPEQDCAVTSGEE--------LLALPPPPPPGGAVPPAAP----VAA 256
RGG + G +PEQ A G L PPP AVPPAAP A
Sbjct: 105 RGGASP---GRPPQPEQPPAQAKGPAHGLHASHVLQPQLPPPLQPRAVPPAAPRRCEAAP 161
Query: 257 REGRLPPGLSASPQPSSVAPRRP 279
+P G SA P +A + P
Sbjct: 162 ATPGVPAGGSAPACPLLLADKSP 184
>gi|23397672 homeobox D4 [Homo sapiens]
Length = 255
Score = 108 bits (271), Expect = 4e-24
Identities = 71/182 (39%), Positives = 89/182 (48%), Gaps = 53/182 (29%)
Query: 23 GPAPEFSASPPACLYMGRQPPPPPPHPFPGALGALEQGSPPDISPYEVPPLADDPAVAHL 82
GP ++A C PP PPP P PGA A Q P
Sbjct: 84 GPGGHYAAPGEPC----PAPPAPPPAPLPGAR-AYSQSDPKQ------------------ 120
Query: 83 HHHLPAQLALPHPPAGPFPEGAEPGVLEEPNRVQLPFPWMKSTKAHAWKGQWAGGAYAAE 142
PP+G L++P V +PWMK ++ + GG
Sbjct: 121 ------------PPSGT--------ALKQPAVV---YPWMKKVHVNSVNPNYTGG----- 152
Query: 143 PEENKRTRTAYTRAQLLELEKEFLFNKYISRPRRVELAVMLNLTERHIKIWFQNRRMKWK 202
E KR+RTAYTR Q+LELEKEF FN+Y++R RR+E+A L L+ER IKIWFQNRRMKWK
Sbjct: 153 --EPKRSRTAYTRQQVLELEKEFHFNRYLTRRRRIEIAHTLCLSERQIKIWFQNRRMKWK 210
Query: 203 KE 204
K+
Sbjct: 211 KD 212
Score = 32.0 bits (71), Expect = 0.63
Identities = 22/70 (31%), Positives = 29/70 (41%), Gaps = 12/70 (17%)
Query: 209 RGGGTAVGGGG--VAEPEQDCAVTSGEELLALPPPPPPGGAVPPAAPVAAREGRLPPGLS 266
RG G GG G A P + C PP PP +P A + + + PP +
Sbjct: 76 RGHGQEPGGPGGHYAAPGEPCPA----------PPAPPPAPLPGARAYSQSDPKQPPSGT 125
Query: 267 ASPQPSSVAP 276
A QP+ V P
Sbjct: 126 ALKQPAVVYP 135
>gi|24497515 homeobox A3 isoform b [Homo sapiens]
Length = 285
Score = 108 bits (269), Expect = 7e-24
Identities = 64/145 (44%), Positives = 81/145 (55%), Gaps = 17/145 (11%)
Query: 146 NKRTRTAYTRAQLLELEKEFLFNKYISRPRRVELAVMLNLTERHIKIWFQNRRMKWKKEE 205
+KR RTAYT AQL+ELEKEF FN+Y+ RPRRVE+A +LNLTER IKIWFQNRRMK+KK++
Sbjct: 33 SKRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKDQ 92
Query: 206 DKKRGGGTAVGGGGVAEPEQDCAVTSGEELLAL---------PPPPPPGGAVPPAAPVAA 256
+G G GG + +G L ++ P PP + PP
Sbjct: 93 ---KGKGMLTSSGGQSPSRSPVPPGAGGYLNSMHSLVNSVPYEPQSPPPFSKPPQGTYG- 148
Query: 257 REGRLPPGLSASPQPSSVAPRRPQE 281
LPP + PS P PQ+
Sbjct: 149 ----LPPASYPASLPSCAPPPPPQK 169
Score = 28.1 bits (61), Expect = 9.1
Identities = 17/45 (37%), Positives = 20/45 (44%), Gaps = 7/45 (15%)
Query: 24 PAPEFSASPPACLYMGRQPPPPPPHPFPGALGALEQGSPPDISPY 68
P + AS P+C PPPPP A GA G PD P+
Sbjct: 150 PPASYPASLPSCA------PPPPPQKRYTAAGA-GAGGTPDYDPH 187
>gi|24497538 homeobox C4 [Homo sapiens]
Length = 264
Score = 106 bits (264), Expect = 3e-23
Identities = 72/179 (40%), Positives = 91/179 (50%), Gaps = 35/179 (19%)
Query: 43 PPPPPHP-FPGALGALEQGSPPDISPYEVPPLADDPAVAHLHHHL--------PAQLA-- 91
PPPPP P +P + P S P A HHH PA L+
Sbjct: 54 PPPPPRPSYPERQYSCTSLQGPGNSRGHGPAQAG-------HHHPEKSQSLCEPAPLSGA 106
Query: 92 ----LPHPPA--GPFPEGAEPGVLEEPNRVQLPFPWMKSTKAHAWKGQWAGGAYAAEPEE 145
P PPA P P+ ++P + +PWMK + GG E
Sbjct: 107 SASPSPAPPACSQPAPDHPSSAASKQP----IVYPWMKKIHVSTVNPNYNGG-------E 155
Query: 146 NKRTRTAYTRAQLLELEKEFLFNKYISRPRRVELAVMLNLTERHIKIWFQNRRMKWKKE 204
KR+RTAYTR Q+LELEKEF +N+Y++R RR+E+A L L+ER IKIWFQNRRMKWKK+
Sbjct: 156 PKRSRTAYTRQQVLELEKEFHYNRYLTRRRRIEIAHSLCLSERQIKIWFQNRRMKWKKD 214
>gi|24497540 homeobox C4 [Homo sapiens]
Length = 264
Score = 106 bits (264), Expect = 3e-23
Identities = 72/179 (40%), Positives = 91/179 (50%), Gaps = 35/179 (19%)
Query: 43 PPPPPHP-FPGALGALEQGSPPDISPYEVPPLADDPAVAHLHHHL--------PAQLA-- 91
PPPPP P +P + P S P A HHH PA L+
Sbjct: 54 PPPPPRPSYPERQYSCTSLQGPGNSRGHGPAQAG-------HHHPEKSQSLCEPAPLSGA 106
Query: 92 ----LPHPPA--GPFPEGAEPGVLEEPNRVQLPFPWMKSTKAHAWKGQWAGGAYAAEPEE 145
P PPA P P+ ++P + +PWMK + GG E
Sbjct: 107 SASPSPAPPACSQPAPDHPSSAASKQP----IVYPWMKKIHVSTVNPNYNGG-------E 155
Query: 146 NKRTRTAYTRAQLLELEKEFLFNKYISRPRRVELAVMLNLTERHIKIWFQNRRMKWKKE 204
KR+RTAYTR Q+LELEKEF +N+Y++R RR+E+A L L+ER IKIWFQNRRMKWKK+
Sbjct: 156 PKRSRTAYTRQQVLELEKEFHYNRYLTRRRRIEIAHSLCLSERQIKIWFQNRRMKWKKD 214
>gi|15029506 homeobox D8 [Homo sapiens]
Length = 290
Score = 104 bits (259), Expect = 1e-22
Identities = 70/201 (34%), Positives = 90/201 (44%), Gaps = 32/201 (15%)
Query: 18 CAFQRGPAPEF---SASPPACLYMGRQPPPP---PPHPFPGALGALEQGSPPDISPYEV- 70
C + G E+ PA Y PPPP PP P P G G P Y+
Sbjct: 83 CGGREGRGQEYFHPGGGSPAAAYQAAPPPPPHPPPPPPPPPCGGIACHGEPAKFYGYDNL 142
Query: 71 --PPLADDPAVAHLHHHLPAQLALPHPPAGPFPEGAEPGVLEEPNRVQLPFPWMKSTKAH 128
P+ A L + P + G +P L + + FPWM+ A
Sbjct: 143 QRQPIFTTQQEAELVQY-------PDCKSSSGNIGEDPDHLNQSSSPSQMFPWMRPQAAP 195
Query: 129 AWKGQWAGGAYAAEPEENKRTRTAYTRAQLLELEKEFLFNKYISRPRRVELAVMLNLTER 188
+R R Y+R Q LELEKEFLFN Y++R RR+E++ L LTER
Sbjct: 196 G----------------RRRGRQTYSRFQTLELEKEFLFNPYLTRKRRIEVSHALALTER 239
Query: 189 HIKIWFQNRRMKWKKEEDKKR 209
+KIWFQNRRMKWKKE +K +
Sbjct: 240 QVKIWFQNRRMKWKKENNKDK 260
>gi|84570137 homeobox B3 [Homo sapiens]
Length = 431
Score = 104 bits (259), Expect = 1e-22
Identities = 63/149 (42%), Positives = 80/149 (53%), Gaps = 2/149 (1%)
Query: 132 GQWAGGAYAAEPEE--NKRTRTAYTRAQLLELEKEFLFNKYISRPRRVELAVMLNLTERH 189
G GG + P +KR RTAYT AQL+ELEKEF FN+Y+ RPRRVE+A +LNL+ER
Sbjct: 172 GGGGGGGDKSPPGSAASKRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLSERQ 231
Query: 190 IKIWFQNRRMKWKKEEDKKRGGGTAVGGGGVAEPEQDCAVTSGEELLALPPPPPPGGAVP 249
IKIWFQNRRMK+KK++ K ++ G P Q T+G P P
Sbjct: 232 IKIWFQNRRMKYKKDQKAKGLASSSGGPSPAGSPPQPMQSTAGFMNALHSMTPSYESPSP 291
Query: 250 PAAPVAAREGRLPPGLSASPQPSSVAPRR 278
PA A + P P AP++
Sbjct: 292 PAFGKAHQNAYALPSNYQPPLKGCGAPQK 320
>gi|33457326 GS homeobox 1 [Homo sapiens]
Length = 264
Score = 102 bits (254), Expect = 4e-22
Identities = 80/237 (33%), Positives = 99/237 (41%), Gaps = 53/237 (22%)
Query: 59 QGSPPDISPYEVPPLAD----DPAVAHLH-----------------HHLPAQLALP---- 93
+GSPP + PY VPP P H H P ALP
Sbjct: 22 EGSPPPLFPYAVPPPHALHGLSPGACHARKAGLLCVCPLCVTASQLHGPPGPPALPLLKA 81
Query: 94 ----------HPPAGPFPEGAEPGVLEEPNRV-------QLPFPWMKSTKAHAWKGQWAG 136
H P G PGV P Q +P + H +
Sbjct: 82 SFPPFGSQYCHAPLGRQHSAVSPGVAHGPAAAAAAAALYQTSYPLPDPRQFHCISVDSSS 141
Query: 137 GAYAAEPEENKRTRTAYTRAQLLELEKEFLFNKYISRPRRVELAVMLNLTERHIKIWFQN 196
+ +KR RTA+T QLLELE+EF N Y+SR RR+E+A LNL+E+ +KIWFQN
Sbjct: 142 NQLPS----SKRMRTAFTSTQLLELEREFASNMYLSRLRRIEIATYLNLSEKQVKIWFQN 197
Query: 197 RRMKWKKE---EDKKRGGGTAVGGGGVAEPEQDCAVTS----GEELLALPPPPPPGG 246
RR+K KKE + + GGG GGGG A CA S E+ LP P G
Sbjct: 198 RRVKHKKEGKGSNHRGGGGGGAGGGGSAPQGCKCASLSSAKCSEDDDELPMSPSSSG 254
>gi|89257348 homeo box HB9 [Homo sapiens]
Length = 401
Score = 100 bits (250), Expect = 1e-21
Identities = 55/109 (50%), Positives = 66/109 (60%), Gaps = 20/109 (18%)
Query: 147 KRTRTAYTRAQLLELEKEFLFNKYISRPRRVELAVMLNLTERHIKIWFQNRRMKWKK--- 203
+R RTA+T QLLELE +F NKY+SRP+R E+A L LTE +KIWFQNRRMKWK+
Sbjct: 242 RRPRTAFTSQQLLELEHQFKLNKYLSRPKRFEVATSLMLTETQVKIWFQNRRMKWKRSKK 301
Query: 204 -------EEDKKRGGGTAVGGGGVAEPEQDCAVTSGEELLALPPPPPPG 245
E +K++GGG G GG EP EELL PP PG
Sbjct: 302 AKEQAAQEAEKQKGGGGGAGKGGAEEP-------GAEELLG---PPAPG 340
>gi|24497517 homeobox A5 [Homo sapiens]
Length = 270
Score = 97.8 bits (242), Expect = 9e-21
Identities = 53/99 (53%), Positives = 62/99 (62%), Gaps = 9/99 (9%)
Query: 119 FPWMKSTKAHAWKGQWAGGAYAAEPEENKRTRTAYTRAQLLELEKEFLFNKYISRPRRVE 178
+PWM+ K H G E KR RTAYTR Q LELEKEF FN+Y++R RR+E
Sbjct: 177 YPWMR--KLHISHDNIGG-------PEGKRARTAYTRYQTLELEKEFHFNRYLTRRRRIE 227
Query: 179 LAVMLNLTERHIKIWFQNRRMKWKKEEDKKRGGGTAVGG 217
+A L L+ER IKIWFQNRRMKWKK+ K A GG
Sbjct: 228 IAHALCLSERQIKIWFQNRRMKWKKDNKLKSMSMAAAGG 266
>gi|121114296 caudal type homeobox 1 [Homo sapiens]
Length = 265
Score = 97.1 bits (240), Expect = 2e-20
Identities = 80/257 (31%), Positives = 109/257 (42%), Gaps = 45/257 (17%)
Query: 33 PACLYMGRQ-------PPPPPPHPFPGALGALEQG-SPPDISPYEVPPLADDPAVAH--- 81
PA L +G Q PP PP +P + +E +PP P DD A A+
Sbjct: 20 PASLGLGPQAYGPPAPPPAPPQYPDFSSYSHVEPAPAPPTAWGAPFPAPKDDWAAAYGPG 79
Query: 82 --LHHHLPAQLALPHPP---AGPFPEGAEPGVLEEP-----------NRVQLPFPWMKST 125
PA LA PP P P G PG+L +P + P+ WM+ +
Sbjct: 80 PAAPAASPASLAFGPPPDFSPVPAPPGPGPGLLAQPLGGPGTPSSPGAQRPTPYEWMRRS 139
Query: 126 KAHAWKGQWAGGAYAAEPEENKRTRTAYTRAQLLELEKEFLFNKYISRPRRVELAVMLNL 185
A GG + + + R YT Q LELEKEF +++YI+ R+ ELA L L
Sbjct: 140 VAAG------GGGGSGKTRTKDKYRVVYTDHQRLELEKEFHYSRYITIRRKSELAANLGL 193
Query: 186 TERHIKIWFQNRRMKWKKEEDKKRGGGTAVGGGGVAEPEQDCAVTSGEELLALPPPPPPG 245
TER +KIWFQNRR K +K KK+ + +Q ++ A P P G
Sbjct: 194 TERQVKIWFQNRRAKERKVNKKKQ------------QQQQPPQPPMAHDITATPAGPSLG 241
Query: 246 GAVPPAAPVAAREGRLP 262
G P + A +P
Sbjct: 242 GLCPSNTSLLATSSPMP 258
>gi|10140847 homeobox A2 [Homo sapiens]
Length = 376
Score = 96.7 bits (239), Expect = 2e-20
Identities = 59/138 (42%), Positives = 71/138 (51%), Gaps = 27/138 (19%)
Query: 93 PHP-PAGPFPEGAEPGVLEEPNRVQLPFPWMKSTKAHAWKGQWAGGAYAAEPEE------ 145
P P PAG G L+ P +PWMK KA A AA
Sbjct: 73 PKPSPAGSRGSPVPAGALQPPE-----YPWMKEKKAAKKTALLPAAAAAATAAATGPACL 127
Query: 146 ---------------NKRTRTAYTRAQLLELEKEFLFNKYISRPRRVELAVMLNLTERHI 190
++R RTAYT QLLELEKEF FNKY+ RPRRVE+A +L+LTER +
Sbjct: 128 SHKESLEIADGSGGGSRRLRTAYTNTQLLELEKEFHFNKYLCRPRRVEIAALLDLTERQV 187
Query: 191 KIWFQNRRMKWKKEEDKK 208
K+WFQNRRMK K++ K
Sbjct: 188 KVWFQNRRMKHKRQTQCK 205
>gi|24497544 homeobox C6 isoform 2 [Homo sapiens]
Length = 153
Score = 96.7 bits (239), Expect = 2e-20
Identities = 52/103 (50%), Positives = 65/103 (63%), Gaps = 12/103 (11%)
Query: 119 FPWMKSTKAHAWKGQWAGGAYAAEPEENKRTRTAYTRAQLLELEKEFLFNKYISRPRRVE 178
+PWM+ +H+ G A + +R R Y+R Q LELEKEF FN+Y++R RR+E
Sbjct: 41 YPWMQRMNSHSGVGYGA---------DRRRGRQIYSRYQTLELEKEFHFNRYLTRRRRIE 91
Query: 179 LAVMLNLTERHIKIWFQNRRMKWKKEEDKKRGGGTAVGGGGVA 221
+A L LTER IKIWFQNRRMKWKKE + T GGGG A
Sbjct: 92 IANALCLTERQIKIWFQNRRMKWKKESNLT---STLSGGGGGA 131
>gi|4758554 homeobox C6 isoform 1 [Homo sapiens]
Length = 235
Score = 96.7 bits (239), Expect = 2e-20
Identities = 52/103 (50%), Positives = 65/103 (63%), Gaps = 12/103 (11%)
Query: 119 FPWMKSTKAHAWKGQWAGGAYAAEPEENKRTRTAYTRAQLLELEKEFLFNKYISRPRRVE 178
+PWM+ +H+ G A + +R R Y+R Q LELEKEF FN+Y++R RR+E
Sbjct: 123 YPWMQRMNSHSGVGYGA---------DRRRGRQIYSRYQTLELEKEFHFNRYLTRRRRIE 173
Query: 179 LAVMLNLTERHIKIWFQNRRMKWKKEEDKKRGGGTAVGGGGVA 221
+A L LTER IKIWFQNRRMKWKKE + T GGGG A
Sbjct: 174 IANALCLTERQIKIWFQNRRMKWKKESNLT---STLSGGGGGA 213
>gi|24497556 homeobox A7 [Homo sapiens]
Length = 230
Score = 95.5 bits (236), Expect = 5e-20
Identities = 57/133 (42%), Positives = 69/133 (51%), Gaps = 20/133 (15%)
Query: 102 EGAEPGVLEEPNRVQLPFPWMKSTKAHAWKGQWAGGAYAAEPEENKRTRTAYTRAQLLEL 161
EGA G E R+ +PWM+S+ + KR R YTR Q LEL
Sbjct: 106 EGALHGAAEANFRI---YPWMRSSGP-----------------DRKRGRQTYTRYQTLEL 145
Query: 162 EKEFLFNKYISRPRRVELAVMLNLTERHIKIWFQNRRMKWKKEEDKKRGGGTAVGGGGVA 221
EKEF FN+Y++R RR+E+A L LTER IKIWFQNRRMKWKKE + A G V
Sbjct: 146 EKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKEHKDEGPTAAAAPEGAVP 205
Query: 222 EPEQDCAVTSGEE 234
A +E
Sbjct: 206 SAAATAAADKADE 218
>gi|11321638 homeobox C5 [Homo sapiens]
Length = 222
Score = 95.5 bits (236), Expect = 5e-20
Identities = 51/104 (49%), Positives = 64/104 (61%), Gaps = 13/104 (12%)
Query: 105 EPGVLEEPNRVQLPFPWMKSTKAHAWKGQWAGGAYAAEPEENKRTRTAYTRAQLLELEKE 164
+P L +P +PWM TK H + + KR+RT+YTR Q LELEKE
Sbjct: 127 QPAGLSQPPAPPQIYPWM--TKLHM-----------SHETDGKRSRTSYTRYQTLELEKE 173
Query: 165 FLFNKYISRPRRVELAVMLNLTERHIKIWFQNRRMKWKKEEDKK 208
F FN+Y++R RR+E+A L L ER IKIWFQNRRMKWKK+ K
Sbjct: 174 FHFNRYLTRRRRIEIANNLCLNERQIKIWFQNRRMKWKKDSKMK 217
>gi|4504469 homeobox B5 [Homo sapiens]
Length = 269
Score = 94.7 bits (234), Expect = 8e-20
Identities = 53/108 (49%), Positives = 65/108 (60%), Gaps = 20/108 (18%)
Query: 101 PEGAEPGVLEEPNRVQLPFPWMKSTKAHAWKGQWAGGAYAAEPEENKRTRTAYTRAQLLE 160
PEG P + FPWM+ K H ++ + KR RTAYTR Q LE
Sbjct: 169 PEGQTPQI----------FPWMR--KLHI--------SHDMTGPDGKRARTAYTRYQTLE 208
Query: 161 LEKEFLFNKYISRPRRVELAVMLNLTERHIKIWFQNRRMKWKKEEDKK 208
LEKEF FN+Y++R RR+E+A L L+ER IKIWFQNRRMKWKK+ K
Sbjct: 209 LEKEFHFNRYLTRRRRIEIAHALCLSERQIKIWFQNRRMKWKKDNKLK 256
>gi|85068580 homeobox B7 [Homo sapiens]
Length = 217
Score = 94.0 bits (232), Expect = 1e-19
Identities = 52/108 (48%), Positives = 65/108 (60%), Gaps = 18/108 (16%)
Query: 119 FPWMKSTKAHAWKGQWAGGAYAAEPEENKRTRTAYTRAQLLELEKEFLFNKYISRPRRVE 178
+PWM+S+ + KR R YTR Q LELEKEF +N+Y++R RR+E
Sbjct: 127 YPWMRSSGT-----------------DRKRGRQTYTRYQTLELEKEFHYNRYLTRRRRIE 169
Query: 179 LAVMLNLTERHIKIWFQNRRMKWKKEEDKKRGGGTAVGGGGVAEPEQD 226
+A L LTER IKIWFQNRRMKWKK E+K G GT AE E++
Sbjct: 170 IAHTLCLTERQIKIWFQNRRMKWKK-ENKTAGPGTTGQDRAEAEEEEE 216
>gi|13273317 homeobox B8 [Homo sapiens]
Length = 243
Score = 93.6 bits (231), Expect = 2e-19
Identities = 54/112 (48%), Positives = 68/112 (60%), Gaps = 21/112 (18%)
Query: 98 GPFPEGAEPGVLEEPNRVQLPFPWMKSTKAHAWKGQWAGGAYAAEPEENKRTRTAYTRAQ 157
G EG+E + P+ QL FPWM+ A AG +R R Y+R Q
Sbjct: 119 GEEAEGSE----QSPSPTQL-FPWMRPQAA-------AG---------RRRGRQTYSRYQ 157
Query: 158 LLELEKEFLFNKYISRPRRVELAVMLNLTERHIKIWFQNRRMKWKKEEDKKR 209
LELEKEFLFN Y++R RR+E++ L LTER +KIWFQNRRMKWKKE +K +
Sbjct: 158 TLELEKEFLFNPYLTRKRRIEVSHALGLTERQVKIWFQNRRMKWKKENNKDK 209
>gi|13489077 homeobox A6 [Homo sapiens]
Length = 233
Score = 90.9 bits (224), Expect = 1e-18
Identities = 47/86 (54%), Positives = 57/86 (66%), Gaps = 9/86 (10%)
Query: 119 FPWMKSTKAHAWKGQWAGGAYAAEPEENKRTRTAYTRAQLLELEKEFLFNKYISRPRRVE 178
+PWM+ + AG Y + +R R YTR Q LELEKEF FN+Y++R RR+E
Sbjct: 137 YPWMQRMNS------CAGAVYGSH---GRRGRQTYTRYQTLELEKEFHFNRYLTRRRRIE 187
Query: 179 LAVMLNLTERHIKIWFQNRRMKWKKE 204
+A L LTER IKIWFQNRRMKWKKE
Sbjct: 188 IANALCLTERQIKIWFQNRRMKWKKE 213
>gi|12056969 homeobox C8 [Homo sapiens]
Length = 242
Score = 90.5 bits (223), Expect = 1e-18
Identities = 50/103 (48%), Positives = 64/103 (62%), Gaps = 17/103 (16%)
Query: 107 GVLEEPNRVQLPFPWMKSTKAHAWKGQWAGGAYAAEPEENKRTRTAYTRAQLLELEKEFL 166
G L + + L FPWM+ HA G+ +G R Y+R Q LELEKEFL
Sbjct: 127 GHLNQNSSPSLMFPWMRP---HA-PGRRSG-------------RQTYSRYQTLELEKEFL 169
Query: 167 FNKYISRPRRVELAVMLNLTERHIKIWFQNRRMKWKKEEDKKR 209
FN Y++R RR+E++ L LTER +KIWFQNRRMKWKKE +K +
Sbjct: 170 FNPYLTRKRRIEVSHALGLTERQVKIWFQNRRMKWKKENNKDK 212
>gi|116805350 homeo box (H6 family) 1 [Homo sapiens]
Length = 348
Score = 90.1 bits (222), Expect = 2e-18
Identities = 84/288 (29%), Positives = 114/288 (39%), Gaps = 46/288 (15%)
Query: 23 GPAPEFSASP---PACLYMGRQPPPPPPHPF-----------PGALGALEQGSPPDISPY 68
GP E A P L +G +PPP P PF P A G G PD S
Sbjct: 76 GPGGEARARALLGPGALGLGPRPPPGPGPPFALGCGGAARWYPRAHGGYGGGLSPDTSDR 135
Query: 69 EVPPLADDPAVAHLHHHLPAQLALPHPPAGPFPEGAEPGVLE-EPNRVQLPFPWMKSTKA 127
+ P ++ A G +P G PG ++ E + P + +A
Sbjct: 136 DSPETGEEMGRAE----------------GAWPRGPGPGAVQREAAELAARGPAAGTEEA 179
Query: 128 H------AWKGQWAGGAYAAEPEENKRTRTAYTRAQLLELEKEFLFNKYISRPRRVELAV 181
A G+ GG + K+TRT ++R+Q+ +LE F +Y+S R LA
Sbjct: 180 SELAEVPAAAGETRGGVGVGGGRK-KKTRTVFSRSQVFQLESTFDLKRYLSSAERAGLAA 238
Query: 182 MLNLTERHIKIWFQNRRMKWKKEEDKKRGGGTAVGGGG-------VAEPEQDCAVTSGEE 234
L LTE +KIWFQNRR KWK++ + + G V E A +
Sbjct: 239 SLQLTETQVKIWFQNRRNKWKRQLAAELEAASLSPPGAQRLVRVPVLYHESPPAAAAAGP 298
Query: 235 LLALPPPPPPGGAVPPAAPVAAREGRLPPGLSASPQPSSVAPRRPQEP 282
LP P P PP P+ G L L+A P +SV R Q P
Sbjct: 299 PATLPFPLAPAAPAPP-PPLLGFSGALAYPLAAFPAAASVPFLRAQMP 345
Score = 30.0 bits (66), Expect = 2.4
Identities = 18/49 (36%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
Query: 10 ATQLYKDPCAFQRGPAPEFSASPPACLYMGRQP-PPPPPHPFPGALGAL 57
A +L + P + P +A PPA L P P PP P G GAL
Sbjct: 276 AQRLVRVPVLYHESPPAAAAAGPPATLPFPLAPAAPAPPPPLLGFSGAL 324
>gi|18959212 GS homeobox 2 [Homo sapiens]
Length = 304
Score = 89.4 bits (220), Expect = 3e-18
Identities = 55/133 (41%), Positives = 70/133 (52%), Gaps = 8/133 (6%)
Query: 77 PAVAHLHHHLPAQLALPHPPAGPFPEGAEPGVLEEPNRVQLPFPWMKSTKAHAWKGQ--- 133
P H HHH P Q A A L P Q P +T + +
Sbjct: 131 PPQHHHHHHQPQQPGSAAAAAAAAAAAAAAAALGHP---QHHAPVCTATTYNVADPRRFH 187
Query: 134 --WAGGAYAAEPEENKRTRTAYTRAQLLELEKEFLFNKYISRPRRVELAVMLNLTERHIK 191
GG+ A++ KR RTA+T QLLELE+EF N Y+SR RR+E+A LNL+E+ +K
Sbjct: 188 CLTMGGSDASQVPNGKRMRTAFTSTQLLELEREFSSNMYLSRLRRIEIATYLNLSEKQVK 247
Query: 192 IWFQNRRMKWKKE 204
IWFQNRR+K KKE
Sbjct: 248 IWFQNRRVKHKKE 260
>gi|5031757 T-cell leukemia homeobox 1 [Homo sapiens]
Length = 330
Score = 89.0 bits (219), Expect = 4e-18
Identities = 56/162 (34%), Positives = 81/162 (50%), Gaps = 9/162 (5%)
Query: 49 PFPGALGALEQGSPPDISPYEVPPLADDPAVAHLHHHLPAQLALPHPPAGPFPEGAEPGV 108
P PG G G+ + + A P + H P LP P+ P A PGV
Sbjct: 111 PGPGGGGGSSGGAGALSAAGVIRVPAHRPLAGAVAHPQPLATGLPTVPSVP----AMPGV 166
Query: 109 LEEPNRVQLPFPWMKSTKAHAWKGQWAGGAYAAE-PEENKRTRTAYTRAQLLELEKEFLF 167
N L FPWM+S + + K ++ G Y P + K+ RT++TR Q+ ELEK F
Sbjct: 167 ---NNLTGLTFPWMESNRRYT-KDRFTGHPYQNRTPPKKKKPRTSFTRLQICELEKRFHR 222
Query: 168 NKYISRPRRVELAVMLNLTERHIKIWFQNRRMKWKKEEDKKR 209
KY++ R LA L +T+ +K WFQNRR KW+++ ++R
Sbjct: 223 QKYLASAERAALAKALKMTDAQVKTWFQNRRTKWRRQTAEER 264
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.314 0.135 0.434
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,137,120
Number of Sequences: 37866
Number of extensions: 1357005
Number of successful extensions: 20592
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 684
Number of HSP's successfully gapped in prelim test: 765
Number of HSP's that attempted gapping in prelim test: 9864
Number of HSP's gapped (non-prelim): 8465
length of query: 283
length of database: 18,247,518
effective HSP length: 101
effective length of query: 182
effective length of database: 14,423,052
effective search space: 2624995464
effective search space used: 2624995464
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.