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Search of human proteins with 45505149
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|45505149 nuclear factor I/C isoform 1 [Homo sapiens]
(428 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|45505149 nuclear factor I/C isoform 1 [Homo sapiens] 877 0.0
gi|45505151 nuclear factor I/C isoform 2 [Homo sapiens] 844 0.0
gi|93004092 nuclear factor I/B [Homo sapiens] 528 e-150
gi|224465184 nuclear factor I/A isoform 4 [Homo sapiens] 512 e-145
gi|30840980 nuclear factor I/A isoform 2 [Homo sapiens] 512 e-145
gi|197927284 nuclear factor I/A isoform 1 [Homo sapiens] 512 e-145
gi|224465182 nuclear factor I/A isoform 3 [Homo sapiens] 497 e-141
gi|56549649 nuclear factor I/X (CCAAT-binding transcription fact... 473 e-133
gi|4505939 DNA-directed RNA polymerase II A [Homo sapiens] 42 8e-04
gi|4503493 early growth response 1 [Homo sapiens] 40 0.003
gi|18079216 CASK interacting protein 1 [Homo sapiens] 39 0.009
gi|217416343 fibrosin-like 1 [Homo sapiens] 38 0.015
gi|48255931 hepatoma-derived growth factor-related protein 2 iso... 38 0.020
gi|14249158 hepatoma-derived growth factor-related protein 2 iso... 38 0.020
gi|239758148 PREDICTED: similar to mucin 11 [Homo sapiens] 37 0.034
gi|239752490 PREDICTED: similar to Mucin-12 [Homo sapiens] 37 0.034
gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens] 37 0.045
gi|148236531 hypothetical protein LOC339779 [Homo sapiens] 37 0.045
gi|50959191 rho guanine nucleotide exchange factor 5 [Homo sapiens] 36 0.059
gi|114155142 nuclear pore complex-associated protein TPR [Homo s... 35 0.100
gi|167736355 mucin 4 isoform a [Homo sapiens] 35 0.13
gi|195546902 suppressor of Ty 5 homolog isoform b [Homo sapiens] 35 0.17
gi|195546900 suppressor of Ty 5 homolog isoform a [Homo sapiens] 35 0.17
gi|161169023 suppressor of Ty 5 homolog isoform a [Homo sapiens] 35 0.17
gi|20149524 suppressor of Ty 5 homolog isoform a [Homo sapiens] 35 0.17
gi|26667257 eyes absent 4 isoform d [Homo sapiens] 35 0.17
gi|98991760 eyes absent 4 isoform a [Homo sapiens] 35 0.17
gi|110556636 tankyrase 1-binding protein 1 [Homo sapiens] 35 0.17
gi|112821681 G protein-regulated inducer of neurite outgrowth 1 ... 35 0.17
gi|215422375 neural precursor cell expressed, developmentally do... 34 0.22
>gi|45505149 nuclear factor I/C isoform 1 [Homo sapiens]
Length = 428
Score = 877 bits (2266), Expect = 0.0
Identities = 428/428 (100%), Positives = 428/428 (100%)
Query: 1 MYSSPLCLTQDEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKDEERAVKDE 60
MYSSPLCLTQDEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKDEERAVKDE
Sbjct: 1 MYSSPLCLTQDEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKDEERAVKDE 60
Query: 61 LLGEKPEVKQKWASRLLAKLRKDIRPECREDFVLSITGKKAPGCVLSNPDQKGKMRRIDC 120
LLGEKPEVKQKWASRLLAKLRKDIRPECREDFVLSITGKKAPGCVLSNPDQKGKMRRIDC
Sbjct: 61 LLGEKPEVKQKWASRLLAKLRKDIRPECREDFVLSITGKKAPGCVLSNPDQKGKMRRIDC 120
Query: 121 LRQADKVWRLDLVMVILFKGIPLESTDGERLVKAAQCGHPVLCVQPHHIGVAVKELDLYL 180
LRQADKVWRLDLVMVILFKGIPLESTDGERLVKAAQCGHPVLCVQPHHIGVAVKELDLYL
Sbjct: 121 LRQADKVWRLDLVMVILFKGIPLESTDGERLVKAAQCGHPVLCVQPHHIGVAVKELDLYL 180
Query: 181 AYFVRERDAEQSGSPRTGMGSDQEDSKPITLDTTDFQESFVTSGVFSVTELIQVSRTPVV 240
AYFVRERDAEQSGSPRTGMGSDQEDSKPITLDTTDFQESFVTSGVFSVTELIQVSRTPVV
Sbjct: 181 AYFVRERDAEQSGSPRTGMGSDQEDSKPITLDTTDFQESFVTSGVFSVTELIQVSRTPVV 240
Query: 241 TGTGPNFSLGELQGHLAYDLNPASTGLRRTLPSTSSSGSKRHKSGSMEEDVDTSPGGDYY 300
TGTGPNFSLGELQGHLAYDLNPASTGLRRTLPSTSSSGSKRHKSGSMEEDVDTSPGGDYY
Sbjct: 241 TGTGPNFSLGELQGHLAYDLNPASTGLRRTLPSTSSSGSKRHKSGSMEEDVDTSPGGDYY 300
Query: 301 TSPSSPTSSSRNWTEDMEGGISSPVKKTEMDKSPFNSPSPQDSPRLSSFTQHHRPVIAVH 360
TSPSSPTSSSRNWTEDMEGGISSPVKKTEMDKSPFNSPSPQDSPRLSSFTQHHRPVIAVH
Sbjct: 301 TSPSSPTSSSRNWTEDMEGGISSPVKKTEMDKSPFNSPSPQDSPRLSSFTQHHRPVIAVH 360
Query: 361 SGIARSPHPSSALHFPTTSILPQTASTYFPHTAIRYPPHLNPQDPLKDLVSLACDPASQQ 420
SGIARSPHPSSALHFPTTSILPQTASTYFPHTAIRYPPHLNPQDPLKDLVSLACDPASQQ
Sbjct: 361 SGIARSPHPSSALHFPTTSILPQTASTYFPHTAIRYPPHLNPQDPLKDLVSLACDPASQQ 420
Query: 421 PGPSWYLG 428
PGPSWYLG
Sbjct: 421 PGPSWYLG 428
>gi|45505151 nuclear factor I/C isoform 2 [Homo sapiens]
Length = 499
Score = 844 bits (2180), Expect = 0.0
Identities = 413/413 (100%), Positives = 413/413 (100%)
Query: 11 DEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKDEERAVKDELLGEKPEVKQ 70
DEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKDEERAVKDELLGEKPEVKQ
Sbjct: 2 DEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKDEERAVKDELLGEKPEVKQ 61
Query: 71 KWASRLLAKLRKDIRPECREDFVLSITGKKAPGCVLSNPDQKGKMRRIDCLRQADKVWRL 130
KWASRLLAKLRKDIRPECREDFVLSITGKKAPGCVLSNPDQKGKMRRIDCLRQADKVWRL
Sbjct: 62 KWASRLLAKLRKDIRPECREDFVLSITGKKAPGCVLSNPDQKGKMRRIDCLRQADKVWRL 121
Query: 131 DLVMVILFKGIPLESTDGERLVKAAQCGHPVLCVQPHHIGVAVKELDLYLAYFVRERDAE 190
DLVMVILFKGIPLESTDGERLVKAAQCGHPVLCVQPHHIGVAVKELDLYLAYFVRERDAE
Sbjct: 122 DLVMVILFKGIPLESTDGERLVKAAQCGHPVLCVQPHHIGVAVKELDLYLAYFVRERDAE 181
Query: 191 QSGSPRTGMGSDQEDSKPITLDTTDFQESFVTSGVFSVTELIQVSRTPVVTGTGPNFSLG 250
QSGSPRTGMGSDQEDSKPITLDTTDFQESFVTSGVFSVTELIQVSRTPVVTGTGPNFSLG
Sbjct: 182 QSGSPRTGMGSDQEDSKPITLDTTDFQESFVTSGVFSVTELIQVSRTPVVTGTGPNFSLG 241
Query: 251 ELQGHLAYDLNPASTGLRRTLPSTSSSGSKRHKSGSMEEDVDTSPGGDYYTSPSSPTSSS 310
ELQGHLAYDLNPASTGLRRTLPSTSSSGSKRHKSGSMEEDVDTSPGGDYYTSPSSPTSSS
Sbjct: 242 ELQGHLAYDLNPASTGLRRTLPSTSSSGSKRHKSGSMEEDVDTSPGGDYYTSPSSPTSSS 301
Query: 311 RNWTEDMEGGISSPVKKTEMDKSPFNSPSPQDSPRLSSFTQHHRPVIAVHSGIARSPHPS 370
RNWTEDMEGGISSPVKKTEMDKSPFNSPSPQDSPRLSSFTQHHRPVIAVHSGIARSPHPS
Sbjct: 302 RNWTEDMEGGISSPVKKTEMDKSPFNSPSPQDSPRLSSFTQHHRPVIAVHSGIARSPHPS 361
Query: 371 SALHFPTTSILPQTASTYFPHTAIRYPPHLNPQDPLKDLVSLACDPASQQPGP 423
SALHFPTTSILPQTASTYFPHTAIRYPPHLNPQDPLKDLVSLACDPASQQPGP
Sbjct: 362 SALHFPTTSILPQTASTYFPHTAIRYPPHLNPQDPLKDLVSLACDPASQQPGP 414
>gi|93004092 nuclear factor I/B [Homo sapiens]
Length = 420
Score = 528 bits (1361), Expect = e-150
Identities = 280/432 (64%), Positives = 329/432 (76%), Gaps = 16/432 (3%)
Query: 1 MYSSPLCLTQDEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKDEERAVKDE 60
M SP+CLTQDEFHPFIEALLPHVRA AYTWFNLQARKRKYFKKHEKRMSKDEERAVKDE
Sbjct: 1 MMYSPICLTQDEFHPFIEALLPHVRAIAYTWFNLQARKRKYFKKHEKRMSKDEERAVKDE 60
Query: 61 LLGEKPEVKQKWASRLLAKLRKDIRPECREDFVLSITGKKAPGCVLSNPDQKGKMRRIDC 120
LL EKPE+KQKWASRLLAKLRKDIR E REDFVL++TGKK P CVLSNPDQKGK+RRIDC
Sbjct: 61 LLSEKPEIKQKWASRLLAKLRKDIRQEYREDFVLTVTGKKHPCCVLSNPDQKGKIRRIDC 120
Query: 121 LRQADKVWRLDLVMVILFKGIPLESTDGERLVKAAQCGHPVLCVQPHHIGVAVKELDLYL 180
LRQADKVWRLDLVMVILFKGIPLESTDGERL+K+ C +P LCVQPHHI V+VKELDL+L
Sbjct: 121 LRQADKVWRLDLVMVILFKGIPLESTDGERLMKSPHCTNPALCVQPHHITVSVKELDLFL 180
Query: 181 AYFVRERDAEQSGSPRTGMGSDQEDSKPITLDTTDFQESFVTSGVFSVTELIQVSRTPVV 240
AY+V+E+D+ QSGSP +D + P L ++SFV SGVF+V+EL++VSRTP+
Sbjct: 181 AYYVQEQDSGQSGSP---SHNDPAKNPPGYL-----EDSFVKSGVFNVSELVRVSRTPIT 232
Query: 241 TGTGPNFSLGELQGHLAYDLNPASTGLRRTLPSTSSSGSKRHKSGSMEEDVDTSPGGDYY 300
GTG NF +GE+ Y + L+R+L S S SKR K+ S++E+++ SP GD+Y
Sbjct: 233 QGTGVNFPIGEIPSQPYYHDMNSGVNLQRSLSSPPS--SKRPKTISIDENMEPSPTGDFY 290
Query: 301 TSPSSPTSSSRNWTEDMEGGISSPVKKTEMDKSPFNSPSPQD-SPRLSSFTQHHRPVI-- 357
SPSSP + SR W E + +SSP + +K F+S SPQD SPRLS+F QHH P I
Sbjct: 291 PSPSSPAAGSRTWHE-RDQDMSSPTTMKKPEKPLFSSASPQDSSPRLSTFPQHHHPGIPG 349
Query: 358 AVHSGIA-RSPHPSSALHFPTTSILPQTASTYFPHTAIRYPPHLNPQDPLKDLVSLACDP 416
HS I+ R+P P S L FPT +ILP S+YF H IRYPPHLNPQD LK+ V + DP
Sbjct: 350 VAHSVISTRTPPPPSPLPFPTQAILPPAPSSYFSHPTIRYPPHLNPQDTLKNYVP-SYDP 408
Query: 417 ASQQPGPSWYLG 428
+S Q SWYLG
Sbjct: 409 SSPQTSQSWYLG 420
>gi|224465184 nuclear factor I/A isoform 4 [Homo sapiens]
Length = 554
Score = 512 bits (1318), Expect = e-145
Identities = 278/430 (64%), Positives = 325/430 (75%), Gaps = 21/430 (4%)
Query: 4 SPLCLTQDEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKDEERAVKDELLG 63
SPLCLTQDEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSK+EERAVKDELL
Sbjct: 48 SPLCLTQDEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKEEERAVKDELLS 107
Query: 64 EKPEVKQKWASRLLAKLRKDIRPECREDFVLSITGKKAPGCVLSNPDQKGKMRRIDCLRQ 123
EKPEVKQKWASRLLAKLRKDIRPE REDFVL++TGKK P CVLSNPDQKGKMRRIDCLRQ
Sbjct: 108 EKPEVKQKWASRLLAKLRKDIRPEYREDFVLTVTGKKPPCCVLSNPDQKGKMRRIDCLRQ 167
Query: 124 ADKVWRLDLVMVILFKGIPLESTDGERLVKAAQCGHPVLCVQPHHIGVAVKELDLYLAYF 183
ADKVWRLDLVMVILFKGIPLESTDGERLVK+ QC +P LCVQPHHIGV+VKELDLYLAYF
Sbjct: 168 ADKVWRLDLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHHIGVSVKELDLYLAYF 227
Query: 184 VRERDAEQSGSPRTGMGSDQEDSKPITLDTTDFQESFVTSGVFSVTELIQVSRTPVVTGT 243
V D+ QS SP +D +D FQ+SFVTSGVFSVTEL++VS+TP+ GT
Sbjct: 228 VHAADSSQSESPSQPSDADIKDQP--ENGHLGFQDSFVTSGVFSVTELVRVSQTPIAAGT 285
Query: 244 GPNFSLGELQGHLAYDLNPASTGLRRTLPSTSSSGSKRHKSGSMEEDVDTSPGGDYYT-- 301
GPNFSL +L+ Y ++P + +RR+LPSTSS+ S + + S+E+++D+ +YT
Sbjct: 286 GPNFSLSDLESSSYYSMSPGA--MRRSLPSTSSTSSTK-RLKSVEDEMDSPGEEPFYTGQ 342
Query: 302 --SPSSPTSSSRNWTEDMEGGISSPVKKTEMDKSPFNSPSPQDSPRL-SSFTQHHRPVIA 358
SP S + SS W E +E G+ SP + +KS F+SPSP + L ++FTQHHRPVI
Sbjct: 343 GRSPGSGSQSS-GWHE-VEPGMPSPTTLKKSEKSGFSSPSPSQTSSLGTAFTQHHRPVI- 399
Query: 359 VHSGIARSPHPS-SALHFPTTSILPQTASTYFPHTAIRYPPHLNPQDPLKDLVSLACDPA 417
+G SPH + S LHFPT+ I+ Q YF H AIRY +PQ+ LK+ V L C A
Sbjct: 400 --TGPRASPHATPSTLHFPTSPII-QQPGPYFSHPAIRY----HPQETLKEFVQLVCPDA 452
Query: 418 SQQPGPSWYL 427
QQ G +L
Sbjct: 453 GQQAGQVGFL 462
>gi|30840980 nuclear factor I/A isoform 2 [Homo sapiens]
Length = 498
Score = 512 bits (1318), Expect = e-145
Identities = 278/430 (64%), Positives = 325/430 (75%), Gaps = 21/430 (4%)
Query: 4 SPLCLTQDEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKDEERAVKDELLG 63
SPLCLTQDEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSK+EERAVKDELL
Sbjct: 3 SPLCLTQDEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKEEERAVKDELLS 62
Query: 64 EKPEVKQKWASRLLAKLRKDIRPECREDFVLSITGKKAPGCVLSNPDQKGKMRRIDCLRQ 123
EKPEVKQKWASRLLAKLRKDIRPE REDFVL++TGKK P CVLSNPDQKGKMRRIDCLRQ
Sbjct: 63 EKPEVKQKWASRLLAKLRKDIRPEYREDFVLTVTGKKPPCCVLSNPDQKGKMRRIDCLRQ 122
Query: 124 ADKVWRLDLVMVILFKGIPLESTDGERLVKAAQCGHPVLCVQPHHIGVAVKELDLYLAYF 183
ADKVWRLDLVMVILFKGIPLESTDGERLVK+ QC +P LCVQPHHIGV+VKELDLYLAYF
Sbjct: 123 ADKVWRLDLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHHIGVSVKELDLYLAYF 182
Query: 184 VRERDAEQSGSPRTGMGSDQEDSKPITLDTTDFQESFVTSGVFSVTELIQVSRTPVVTGT 243
V D+ QS SP +D +D FQ+SFVTSGVFSVTEL++VS+TP+ GT
Sbjct: 183 VHAADSSQSESPSQPSDADIKDQP--ENGHLGFQDSFVTSGVFSVTELVRVSQTPIAAGT 240
Query: 244 GPNFSLGELQGHLAYDLNPASTGLRRTLPSTSSSGSKRHKSGSMEEDVDTSPGGDYYT-- 301
GPNFSL +L+ Y ++P + +RR+LPSTSS+ S + + S+E+++D+ +YT
Sbjct: 241 GPNFSLSDLESSSYYSMSPGA--MRRSLPSTSSTSSTK-RLKSVEDEMDSPGEEPFYTGQ 297
Query: 302 --SPSSPTSSSRNWTEDMEGGISSPVKKTEMDKSPFNSPSPQDSPRL-SSFTQHHRPVIA 358
SP S + SS W E +E G+ SP + +KS F+SPSP + L ++FTQHHRPVI
Sbjct: 298 GRSPGSGSQSS-GWHE-VEPGMPSPTTLKKSEKSGFSSPSPSQTSSLGTAFTQHHRPVI- 354
Query: 359 VHSGIARSPHPS-SALHFPTTSILPQTASTYFPHTAIRYPPHLNPQDPLKDLVSLACDPA 417
+G SPH + S LHFPT+ I+ Q YF H AIRY +PQ+ LK+ V L C A
Sbjct: 355 --TGPRASPHATPSTLHFPTSPII-QQPGPYFSHPAIRY----HPQETLKEFVQLVCPDA 407
Query: 418 SQQPGPSWYL 427
QQ G +L
Sbjct: 408 GQQAGQVGFL 417
>gi|197927284 nuclear factor I/A isoform 1 [Homo sapiens]
Length = 509
Score = 512 bits (1318), Expect = e-145
Identities = 278/430 (64%), Positives = 325/430 (75%), Gaps = 21/430 (4%)
Query: 4 SPLCLTQDEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKDEERAVKDELLG 63
SPLCLTQDEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSK+EERAVKDELL
Sbjct: 3 SPLCLTQDEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKEEERAVKDELLS 62
Query: 64 EKPEVKQKWASRLLAKLRKDIRPECREDFVLSITGKKAPGCVLSNPDQKGKMRRIDCLRQ 123
EKPEVKQKWASRLLAKLRKDIRPE REDFVL++TGKK P CVLSNPDQKGKMRRIDCLRQ
Sbjct: 63 EKPEVKQKWASRLLAKLRKDIRPEYREDFVLTVTGKKPPCCVLSNPDQKGKMRRIDCLRQ 122
Query: 124 ADKVWRLDLVMVILFKGIPLESTDGERLVKAAQCGHPVLCVQPHHIGVAVKELDLYLAYF 183
ADKVWRLDLVMVILFKGIPLESTDGERLVK+ QC +P LCVQPHHIGV+VKELDLYLAYF
Sbjct: 123 ADKVWRLDLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHHIGVSVKELDLYLAYF 182
Query: 184 VRERDAEQSGSPRTGMGSDQEDSKPITLDTTDFQESFVTSGVFSVTELIQVSRTPVVTGT 243
V D+ QS SP +D +D FQ+SFVTSGVFSVTEL++VS+TP+ GT
Sbjct: 183 VHAADSSQSESPSQPSDADIKDQP--ENGHLGFQDSFVTSGVFSVTELVRVSQTPIAAGT 240
Query: 244 GPNFSLGELQGHLAYDLNPASTGLRRTLPSTSSSGSKRHKSGSMEEDVDTSPGGDYYT-- 301
GPNFSL +L+ Y ++P + +RR+LPSTSS+ S + + S+E+++D+ +YT
Sbjct: 241 GPNFSLSDLESSSYYSMSPGA--MRRSLPSTSSTSSTK-RLKSVEDEMDSPGEEPFYTGQ 297
Query: 302 --SPSSPTSSSRNWTEDMEGGISSPVKKTEMDKSPFNSPSPQDSPRL-SSFTQHHRPVIA 358
SP S + SS W E +E G+ SP + +KS F+SPSP + L ++FTQHHRPVI
Sbjct: 298 GRSPGSGSQSS-GWHE-VEPGMPSPTTLKKSEKSGFSSPSPSQTSSLGTAFTQHHRPVI- 354
Query: 359 VHSGIARSPHPS-SALHFPTTSILPQTASTYFPHTAIRYPPHLNPQDPLKDLVSLACDPA 417
+G SPH + S LHFPT+ I+ Q YF H AIRY +PQ+ LK+ V L C A
Sbjct: 355 --TGPRASPHATPSTLHFPTSPII-QQPGPYFSHPAIRY----HPQETLKEFVQLVCPDA 407
Query: 418 SQQPGPSWYL 427
QQ G +L
Sbjct: 408 GQQAGQVGFL 417
>gi|224465182 nuclear factor I/A isoform 3 [Homo sapiens]
Length = 501
Score = 497 bits (1280), Expect = e-141
Identities = 271/423 (64%), Positives = 318/423 (75%), Gaps = 21/423 (4%)
Query: 11 DEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKDEERAVKDELLGEKPEVKQ 70
DEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSK+EERAVKDELL EKPEVKQ
Sbjct: 2 DEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKEEERAVKDELLSEKPEVKQ 61
Query: 71 KWASRLLAKLRKDIRPECREDFVLSITGKKAPGCVLSNPDQKGKMRRIDCLRQADKVWRL 130
KWASRLLAKLRKDIRPE REDFVL++TGKK P CVLSNPDQKGKMRRIDCLRQADKVWRL
Sbjct: 62 KWASRLLAKLRKDIRPEYREDFVLTVTGKKPPCCVLSNPDQKGKMRRIDCLRQADKVWRL 121
Query: 131 DLVMVILFKGIPLESTDGERLVKAAQCGHPVLCVQPHHIGVAVKELDLYLAYFVRERDAE 190
DLVMVILFKGIPLESTDGERLVK+ QC +P LCVQPHHIGV+VKELDLYLAYFV D+
Sbjct: 122 DLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHHIGVSVKELDLYLAYFVHAADSS 181
Query: 191 QSGSPRTGMGSDQEDSKPITLDTTDFQESFVTSGVFSVTELIQVSRTPVVTGTGPNFSLG 250
QS SP +D +D FQ+SFVTSGVFSVTEL++VS+TP+ GTGPNFSL
Sbjct: 182 QSESPSQPSDADIKDQP--ENGHLGFQDSFVTSGVFSVTELVRVSQTPIAAGTGPNFSLS 239
Query: 251 ELQGHLAYDLNPASTGLRRTLPSTSSSGSKRHKSGSMEEDVDTSPGGDYYT----SPSSP 306
+L+ Y ++P + +RR+LPSTSS+ S + + S+E+++D+ +YT SP S
Sbjct: 240 DLESSSYYSMSPGA--MRRSLPSTSSTSSTK-RLKSVEDEMDSPGEEPFYTGQGRSPGSG 296
Query: 307 TSSSRNWTEDMEGGISSPVKKTEMDKSPFNSPSPQDSPRL-SSFTQHHRPVIAVHSGIAR 365
+ SS W E +E G+ SP + +KS F+SPSP + L ++FTQHHRPVI +G
Sbjct: 297 SQSS-GWHE-VEPGMPSPTTLKKSEKSGFSSPSPSQTSSLGTAFTQHHRPVI---TGPRA 351
Query: 366 SPHPS-SALHFPTTSILPQTASTYFPHTAIRYPPHLNPQDPLKDLVSLACDPASQQPGPS 424
SPH + S LHFPT+ I+ Q YF H AIRY +PQ+ LK+ V L C A QQ G
Sbjct: 352 SPHATPSTLHFPTSPII-QQPGPYFSHPAIRY----HPQETLKEFVQLVCPDAGQQAGQV 406
Query: 425 WYL 427
+L
Sbjct: 407 GFL 409
>gi|56549649 nuclear factor I/X (CCAAT-binding transcription factor)
[Homo sapiens]
Length = 441
Score = 473 bits (1216), Expect = e-133
Identities = 260/421 (61%), Positives = 302/421 (71%), Gaps = 13/421 (3%)
Query: 4 SPLCLTQDEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKDEERAVKDELLG 63
SP CLTQDEFHPFIEALLPHVRAF+YTWFNLQARKRKYFKKHEKRMSKDEERAVKDELLG
Sbjct: 3 SPYCLTQDEFHPFIEALLPHVRAFSYTWFNLQARKRKYFKKHEKRMSKDEERAVKDELLG 62
Query: 64 EKPEVKQKWASRLLAKLRKDIRPECREDFVLSITGKKAPGCVLSNPDQKGKMRRIDCLRQ 123
EKPE+KQKWASRLLAKLRKDIRPE REDFVL+ITGKK P CVLSNPDQKGK+RRIDCLRQ
Sbjct: 63 EKPEIKQKWASRLLAKLRKDIRPEFREDFVLTITGKKPPCCVLSNPDQKGKIRRIDCLRQ 122
Query: 124 ADKVWRLDLVMVILFKGIPLESTDGERLVKAAQCGHPVLCVQPHHIGVAVKELDLYLAYF 183
ADKVWRLDLVMVILFKGIPLESTDGERL K+ QC +P LCVQPHHIGV +KELDLYLAYF
Sbjct: 123 ADKVWRLDLVMVILFKGIPLESTDGERLYKSPQCSNPGLCVQPHHIGVTIKELDLYLAYF 182
Query: 184 VRERDAEQSGSPRTGMGSDQEDSKPITLDTTDFQESFVTSGVFSVTELIQVSRTPVVTGT 243
V ++ QS S D KP+ FQ+ FVTSGV++VTEL++VS+TPV T +
Sbjct: 183 VHTPESGQSDSSNQ---QGDADIKPLPNGHLSFQDCFVTSGVWNVTELVRVSQTPVATAS 239
Query: 244 GPNFSLGELQGHLAYDLNPASTGLRRTLPSTSSSGSKRHKS---GSMEEDVDTSPGGDYY 300
GPNFSL +L+ Y++N + G R S+S +KR KS ME VD
Sbjct: 240 GPNFSLADLESPSYYNINQVTLGRRSITSPPSTSTTKRPKSIDDSEMESPVDDVFYPGTG 299
Query: 301 TSPSSPTSSSRNWTEDMEGGISSPVKKTEMDKSPFNSPSPQDSPRLSSFTQHHRPVIA-V 359
SP++ +S S W D++ G +S K ++D S S SPR+ +FT H PV+A V
Sbjct: 300 RSPAAGSSQSSGWPNDVDAGPASLKKSGKLDFCSALS-SQGSSPRM-AFTHHPLPVLAGV 357
Query: 360 HSGIARSPHPSSALHFPTTSILPQTASTYFPHTAIRYPPHLNPQDPLKDLVSLACDPASQ 419
G R+ +SALHFP+TSI+ Q +S YF H IRY H + QD LK+ V C S
Sbjct: 358 RPGSPRA--TASALHFPSTSII-QQSSPYFTHPTIRYHHH-HGQDSLKEFVQFVCSDGSG 413
Query: 420 Q 420
Q
Sbjct: 414 Q 414
>gi|4505939 DNA-directed RNA polymerase II A [Homo sapiens]
Length = 1970
Score = 42.4 bits (98), Expect = 8e-04
Identities = 58/211 (27%), Positives = 80/211 (37%), Gaps = 15/211 (7%)
Query: 222 TSGVFSVTELIQVSRTPVVTGTGPNFSLGELQGHLAYDLNPASTGLRRTLPS---TSSSG 278
TS +S T +P + T P++S + +P S T PS TS S
Sbjct: 1625 TSPSYSPTSPNYSPTSPSYSPTSPSYS------PTSPSYSPTSPSYSPTSPSYSPTSPSY 1678
Query: 279 SKRHKSGSMEEDVDTSPGGDYY--TSPS-SPTSSSRNWTEDMEGGISSPVKKTEMDKSPF 335
S S S SP Y TSPS SPTS S + T S T SP
Sbjct: 1679 SPTSPSYSPTSP-SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1737
Query: 336 NSPSPQDSPRLSSFTQHHRPVIAVHSGIARSPHPSSALHFPTTSILPQTASTYFPHTAIR 395
+ SP S + ++ P +S + S P+S + PT+ T+ +Y P +
Sbjct: 1738 SPSYSPTSPNYSPTSPNYTPTSPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSYSPTSPSY 1797
Query: 396 YP--PHLNPQDPLKDLVSLACDPASQQPGPS 424
P P +P P S P+S PS
Sbjct: 1798 SPTSPSYSPSSPRYTPQSPTYTPSSPSYSPS 1828
Score = 42.0 bits (97), Expect = 0.001
Identities = 38/134 (28%), Positives = 53/134 (39%), Gaps = 3/134 (2%)
Query: 294 SPGGDYYTSPS-SPTSSSRNWTEDMEGGISSPVKKTEMDKSPFNSPSPQDSPRLSSFTQH 352
SPGG SPS SPTS S + T S T SP + SP S +
Sbjct: 1604 SPGGYTPQSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1663
Query: 353 HRPVIAVHSGIARSPHPSSALHFPTTSILPQTASTYFPHTAIRYP--PHLNPQDPLKDLV 410
+ P +S + S P+S + PT+ T+ +Y P + P P +P P
Sbjct: 1664 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1723
Query: 411 SLACDPASQQPGPS 424
S + P S P+
Sbjct: 1724 SPSYSPTSPSYSPT 1737
Score = 40.4 bits (93), Expect = 0.003
Identities = 47/180 (26%), Positives = 70/180 (38%), Gaps = 15/180 (8%)
Query: 222 TSGVFSVTELIQVSRTPVVTGTGPNFSLGELQGHLAYDLNPASTGLRRTLPSTSSSGSKR 281
TS +S T +P T T PN+S + +P S T PS S S +
Sbjct: 1758 TSPSYSPTSPSYSPTSPNYTPTSPNYS------PTSPSYSPTSPSYSPTSPSYSPSSPRY 1811
Query: 282 HKSGSMEEDVDTSPGGDYYT--SPS-SPTSSSRNWTEDMEGGISSPVKKTEMDKSPFNSP 338
+ +P Y+ SPS SPTS T S T SP +
Sbjct: 1812 -----TPQSPTYTPSSPSYSPSSPSYSPTSPKYTPTSPSYSPSSPEYTPTSPKYSPTSPK 1866
Query: 339 SPQDSPRLSSFTQHHRPVIAVHSGIARSPHPSSALHFPTTSILPQTASTYFPHTAIRYPP 398
SP+ S + + P +S + + P+S ++ PT+ T+ TY P T+ +Y P
Sbjct: 1867 YSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPTSPTYSP-TSPKYSP 1925
Score = 39.7 bits (91), Expect = 0.005
Identities = 56/209 (26%), Positives = 78/209 (37%), Gaps = 18/209 (8%)
Query: 222 TSGVFSVTELIQVSRTPVVTGTGPNFSLGELQGHLAYDLNPASTGLRRTLPS---TSSSG 278
TS +S T +P + T P++S + +P S T PS TS S
Sbjct: 1681 TSPSYSPTSPSYSPTSPSYSPTSPSYS------PTSPSYSPTSPSYSPTSPSYSPTSPSY 1734
Query: 279 SKRHKSGSMEEDVDTSPGGDYYT--SPS-SPTSSSRNWTEDMEGGISSPVKKTEMDKSPF 335
S S S + SP YT SPS SPTS S + T S T SP
Sbjct: 1735 SPTSPSYSPTSP-NYSPTSPNYTPTSPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSYSPT 1793
Query: 336 NSPSPQDSPRLSSFTQHHRPVIAVHSGIARSPHPSSALHFPTTSILPQTASTYFPHTAIR 395
+ SP S + + P ++ + S PSS + PT+ T+ +Y P +
Sbjct: 1794 SPSYSPTSPSYSPSSPRYTPQSPTYTPSSPSYSPSSPSYSPTSPKYTPTSPSYSPSS--- 1850
Query: 396 YPPHLNPQDPLKDLVSLACDPASQQPGPS 424
P P P S P S + P+
Sbjct: 1851 --PEYTPTSPKYSPTSPKYSPTSPKYSPT 1877
Score = 38.5 bits (88), Expect = 0.012
Identities = 45/167 (26%), Positives = 64/167 (38%), Gaps = 6/167 (3%)
Query: 261 NPASTGLRRTLPSTSSSGSKRHKSGSMEEDVDTSPGGDYYTSPS-SPTSSSRNWTEDMEG 319
+P S T PS S + + S + TSP TSPS SPTS S + T
Sbjct: 1616 SPTSPSYSPTSPSYSPTSP--NYSPTSPSYSPTSPSYSP-TSPSYSPTSPSYSPTSPSYS 1672
Query: 320 GISSPVKKTEMDKSPFNSPSPQDSPRLSSFTQHHRPVIAVHSGIARSPHPSSALHFPTTS 379
S T SP + SP S + + P +S + S P+S + PT+
Sbjct: 1673 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1732
Query: 380 ILPQTASTYFPHTAIRYP--PHLNPQDPLKDLVSLACDPASQQPGPS 424
T+ +Y P + P P+ P P S + P S P+
Sbjct: 1733 SYSPTSPSYSPTSPNYSPTSPNYTPTSPSYSPTSPSYSPTSPNYTPT 1779
>gi|4503493 early growth response 1 [Homo sapiens]
Length = 543
Score = 40.4 bits (93), Expect = 0.003
Identities = 33/103 (32%), Positives = 45/103 (43%), Gaps = 8/103 (7%)
Query: 305 SPTSSSRNWTEDMEGGISSPVKKTEMDKSPFNSPSPQDSPRLSSFTQHHRPVIAVHSGIA 364
+P S + W E + +S V T S ++PSP S S+ P+
Sbjct: 142 APNSGNTLWPEPLFSLVSGLVSMTNPPASSSSAPSPAAS---SASASQSPPLSCAVPSND 198
Query: 365 RSPHPSSALHFPT--TSILPQTASTYFP---HTAIRYPPHLNP 402
SP S+A FPT T I P+ S FP TA++YPP P
Sbjct: 199 SSPIYSAAPTFPTPNTDIFPEPQSQAFPGSAGTALQYPPPAYP 241
>gi|18079216 CASK interacting protein 1 [Homo sapiens]
Length = 1431
Score = 38.9 bits (89), Expect = 0.009
Identities = 46/171 (26%), Positives = 59/171 (34%), Gaps = 24/171 (14%)
Query: 270 TLPSTSSSGSKRHKSGSMEEDVDTSPGGDYYTSPSSPTSSSRNWTEDMEGGISSP----- 324
T +S G RH S S E D PG PSSP S S+ + D +P
Sbjct: 690 TRQDSSLGGRARHMSSSQELLGDGPPG------PSSPMSRSQEYLLDEGPAPGTPPREAR 743
Query: 325 -------VKKTEMDKSPFNSPSPQDSPRLSSFTQHH-----RPVIAVHSGIARSPHPSSA 372
+K+ + P P P S FT RP G P P++A
Sbjct: 744 PGRHGHSIKRASVPPVP-GKPRQVLPPGTSHFTPPQTPTKTRPGSPQALGGPHGPAPATA 802
Query: 373 LHFPTTSILPQTASTYFPHTAIRYPPHLNPQDPLKDLVSLACDPASQQPGP 423
PT +LP T P + + P H L V PA+ P P
Sbjct: 803 KVKPTPQLLPPTERPMSPRSLPQSPTHRGFAYVLPQPVEGEVGPAAPGPAP 853
>gi|217416343 fibrosin-like 1 [Homo sapiens]
Length = 1045
Score = 38.1 bits (87), Expect = 0.015
Identities = 41/157 (26%), Positives = 56/157 (35%), Gaps = 9/157 (5%)
Query: 254 GHLAYDLNPASTGLRRT-LPSTSSSGSKRHKSGSMEEDVDT----SPGGDYYTSPSSPTS 308
G DL PA G R+ L + K G + D D+ + D + S+
Sbjct: 140 GSPGQDLEPACDGARKVPLQPSKQMKVTVSKGGDRDSDDDSVLEATSSRDPLSDSSAHAV 199
Query: 309 SSRNWTEDMEGGISSPVKKTEMDKSPFNSPSPQDSPRLSSFTQHHRPVIAVHSGIARSPH 368
S R ++ D E G P K + +P P L PV V SG+ RS
Sbjct: 200 SGRGYSCDSESG---PDDKASVGSEKLFAPGTDKGPALEKSEAKAGPVPKV-SGLERSRE 255
Query: 369 PSSALHFPTTSILPQTASTYFPHTAIRYPPHLNPQDP 405
S+ PT S P A P R P + + P
Sbjct: 256 LSAESFLPTASPAPHAAPCPGPPPGSRANPLVKKEPP 292
>gi|48255931 hepatoma-derived growth factor-related protein 2
isoform 1 [Homo sapiens]
Length = 671
Score = 37.7 bits (86), Expect = 0.020
Identities = 43/183 (23%), Positives = 73/183 (39%), Gaps = 16/183 (8%)
Query: 194 SPRTGMGSDQEDSKPITLDTTDFQESFVTSGVFSVTELIQVSRTPVVTGTGPNFSLGELQ 253
+P SD E + D +D E GV +VT VT T + ++
Sbjct: 94 APPPVSSSDSEAPEANPADGSDADEDDEDRGVMAVT---------AVTATAAS---DRME 141
Query: 254 GHLAYDLNPASTGLRRTLPSTSSSGSKRHKSGSMEED---VDTSPGGDYYTSPSSPTSSS 310
D + ++GL+R P+ S SKR + S + D V S + +S S +S
Sbjct: 142 SDSDSDKSSDNSGLKRKTPALKMSVSKRARKASSDLDQASVSPSEEENSESSSESEKTSD 201
Query: 311 RNWTEDMEGGISSPVKKTEMDKSPFNSPSPQDS-PRLSSFTQHHRPVIAVHSGIARSPHP 369
+++T + + + +P + + +PS DS + S PV S + S
Sbjct: 202 QDFTPEKKAAVRAPRRGPLGGRKKKKAPSASDSDSKADSDGAKPEPVAMARSASSSSSSS 261
Query: 370 SSA 372
SS+
Sbjct: 262 SSS 264
>gi|14249158 hepatoma-derived growth factor-related protein 2
isoform 2 [Homo sapiens]
Length = 670
Score = 37.7 bits (86), Expect = 0.020
Identities = 43/183 (23%), Positives = 73/183 (39%), Gaps = 16/183 (8%)
Query: 194 SPRTGMGSDQEDSKPITLDTTDFQESFVTSGVFSVTELIQVSRTPVVTGTGPNFSLGELQ 253
+P SD E + D +D E GV +VT VT T + ++
Sbjct: 94 APPPVSSSDSEAPEANPADGSDADEDDEDRGVMAVT---------AVTATAAS---DRME 141
Query: 254 GHLAYDLNPASTGLRRTLPSTSSSGSKRHKSGSMEED---VDTSPGGDYYTSPSSPTSSS 310
D + ++GL+R P+ S SKR + S + D V S + +S S +S
Sbjct: 142 SDSDSDKSSDNSGLKRKTPALKMSVSKRARKASSDLDQASVSPSEEENSESSSESEKTSD 201
Query: 311 RNWTEDMEGGISSPVKKTEMDKSPFNSPSPQDS-PRLSSFTQHHRPVIAVHSGIARSPHP 369
+++T + + + +P + + +PS DS + S PV S + S
Sbjct: 202 QDFTPEKKAAVRAPRRGPLGGRKKKKAPSASDSDSKADSDGAKPEPVAMARSASSSSSSS 261
Query: 370 SSA 372
SS+
Sbjct: 262 SSS 264
>gi|239758148 PREDICTED: similar to mucin 11 [Homo sapiens]
Length = 587
Score = 37.0 bits (84), Expect = 0.034
Identities = 48/212 (22%), Positives = 83/212 (39%), Gaps = 14/212 (6%)
Query: 190 EQSGSPRTGMGSDQEDSKPITLDTTDFQESFVTSGVF--SVTELIQVSRTPVVTGTGPNF 247
+ + +P S S P + DTT S TSG S T T G
Sbjct: 170 DSTTTPGLSRHSTTSHSSPGSTDTTLLPASTTTSGPSQESTTSHSSPGSTDTALSPGSTT 229
Query: 248 SLGELQGHLAYDLNPASTGLRRTLPSTSSSG-----SKRHKSG-----SMEEDVDTSPGG 297
+L Q + +P ST ST+SSG ++ H S ++ TSPG
Sbjct: 230 ALSFGQESTTFHSSPGSTHTTLFPDSTTSSGIVEASTRVHSSTGSPRTTLSPASSTSPGL 289
Query: 298 DYYTSPSSPTSSSRNWTEDMEGGISSPVKK-TEMDKSPFNSPSPQDSPRLSSFTQHHRPV 356
++ +S + T ++PV++ T +SP ++P+ P S+ + H
Sbjct: 290 QGESTAFQTHPASTHTTPSPPSTATAPVEESTTYHRSPGSTPTTH-FPASSTTSGHSEKS 348
Query: 357 IAVHSGIARSPHPSSALHFPTTSILPQTASTY 388
HS S S+ H T+ + ++++++
Sbjct: 349 TIFHSSPDASGTTPSSAHSTTSGVSEESSTSH 380
Score = 30.4 bits (67), Expect = 3.2
Identities = 45/162 (27%), Positives = 65/162 (40%), Gaps = 18/162 (11%)
Query: 201 SDQEDSKPITLDTTDFQESFVTSGVFSVTELIQVSR-----TPVVTGTGPNFSLGELQGH 255
S S+P + TT F +S TSG+ S+ T T + P + ++
Sbjct: 376 SSTSHSQPGSTHTTAFPDSTTTSGLSQEPTTSHSSQGSTEATLDTTPSPPGTTAAPVEVS 435
Query: 256 LAYDLNPASTGLRRTLPSTSSSGSKRHKSGSMEE-DVDTSPGGDYYTS-PSSPTSSSRNW 313
Y P+ST P+T S S S E V +SPG T+ P S T++
Sbjct: 436 TTYHSRPSST------PTTHFSASSTTLGRSEESTTVHSSPGSTETTALPGSTTTA--GL 487
Query: 314 TEDMEGGISSPVKKTEMDKSPFNSPSPQDSPRLSSFTQHHRP 355
+E SSP + + SP ++ S S S T H RP
Sbjct: 488 SEKSTTFYSSP-RSPDTTLSPASTTSSGVSE--ESTTSHSRP 526
>gi|239752490 PREDICTED: similar to Mucin-12 [Homo sapiens]
Length = 456
Score = 37.0 bits (84), Expect = 0.034
Identities = 48/212 (22%), Positives = 83/212 (39%), Gaps = 14/212 (6%)
Query: 190 EQSGSPRTGMGSDQEDSKPITLDTTDFQESFVTSGVF--SVTELIQVSRTPVVTGTGPNF 247
+ + +P S S P + DTT S TSG S T T G
Sbjct: 64 DSTTTPGLSRHSTTSHSSPGSTDTTLLPASTTTSGPSQESTTSHSSPGSTDTALSPGSTT 123
Query: 248 SLGELQGHLAYDLNPASTGLRRTLPSTSSSG-----SKRHKSG-----SMEEDVDTSPGG 297
+L Q + +P ST ST+SSG ++ H S ++ TSPG
Sbjct: 124 ALSFGQESTTFHSSPGSTHTTLFPDSTTSSGIVEASTRVHSSTGSPRTTLSPASSTSPGL 183
Query: 298 DYYTSPSSPTSSSRNWTEDMEGGISSPVKK-TEMDKSPFNSPSPQDSPRLSSFTQHHRPV 356
++ +S + T ++PV++ T +SP ++P+ P S+ + H
Sbjct: 184 QGESTAFQTHPASTHTTPSPPSTATAPVEESTTYHRSPGSTPTTH-FPASSTTSGHSEKS 242
Query: 357 IAVHSGIARSPHPSSALHFPTTSILPQTASTY 388
HS S S+ H T+ + ++++++
Sbjct: 243 TIFHSSPDASGTTPSSAHSTTSGVSEESSTSH 274
Score = 31.2 bits (69), Expect = 1.9
Identities = 52/197 (26%), Positives = 75/197 (38%), Gaps = 23/197 (11%)
Query: 201 SDQEDSKPITLDTTDFQESFVTSGVFSVTELIQVSR-----TPVVTGTGPNFSLGELQGH 255
S S+P + TT F +S TSG+ S+ T T + P + ++
Sbjct: 270 SSTSHSQPGSTHTTAFPDSTTTSGLSQEPTTSHSSQGSTEATLDTTPSPPGTTAAPVEVS 329
Query: 256 LAYDLNPASTGLRRTLPSTSSSGSKRHKSGSMEE-DVDTSPGGDYYTS-PSSPTSSSRNW 313
Y P+ST P+T S S S E V +SPG T+ P S T++
Sbjct: 330 TTYHSRPSST------PTTHFSASSTTLGRSEESTTVHSSPGSTETTALPGSTTTA--GL 381
Query: 314 TEDMEGGISSPVKKTEMDKSPFNSPSPQDSPRLSSFTQHHRPVIAVHSGIARSPHPSSAL 373
+E SSP + + SP ++ S S S T H RP + P S
Sbjct: 382 SEKSTTFYSSP-RSPDTTLSPASTTSSGVSE--ESTTSHSRP-----GSTHTTAFPGSTT 433
Query: 374 HFPTTSILPQTASTYFP 390
SI+P + Y P
Sbjct: 434 MPGYHSIIPWSRIYYLP 450
>gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]
Length = 2752
Score = 36.6 bits (83), Expect = 0.045
Identities = 53/205 (25%), Positives = 72/205 (35%), Gaps = 18/205 (8%)
Query: 234 VSRTPVVTGTGPNFSLGELQGHLAYDLNPASTGLRRTLPSTSSSGSKRHKSGSMEEDVDT 293
V P TG +L LQ + +S+ + S+SSS S SGS D
Sbjct: 2506 VGEPPASTGAQQPSALAALQPAKERRSSSSSSSSSSSSSSSSSSSSSSSSSGSSSSD--- 2562
Query: 294 SPGGDYYTSPS-------SPTSSSRNWTEDMEGGISSPVKKTEMDKSPFNSPSPQDSPRL 346
S G P SPT + + + +P K+ S +S S S
Sbjct: 2563 SEGSSLPVQPEVALKRVPSPTPAPKEAVREGRPPEPTPAKRKRRSSSSSSSSSSSSSSSS 2622
Query: 347 SSFTQHHRPVIAVHSGIARSPHPSSALH--FPTTSILPQTASTYFPHTAIRYP-PHLNPQ 403
SS + + S + S SS+ P LP+ AS P R P
Sbjct: 2623 SSSSSSSSSSSSSSSSSSSSSSSSSSPSPAKPGPQALPKPASPKKPPPGERRSRSPRKPI 2682
Query: 404 DPLKDLVSLACDPA-----SQQPGP 423
D L+D SL+ P S QP P
Sbjct: 2683 DSLRDSRSLSYSPVERRRPSPQPSP 2707
Score = 32.0 bits (71), Expect = 1.1
Identities = 41/148 (27%), Positives = 61/148 (41%), Gaps = 21/148 (14%)
Query: 262 PASTGLRRTLPSTSSSGSKRHKSGSMEEDVDTSPGGDYYTSPSSPTSSSRNWTEDMEGGI 321
PA +G T P S +R + +D + T PS+P S SR +E
Sbjct: 2373 PALSGANLTSPRVPLSAYERVSGRTSPPLLDRARSR---TPPSAP-SQSRMTSE------ 2422
Query: 322 SSPVKKTEMDKSPFNS--PSPQDSPRL---SSFTQHHRPVIAVHSGIARSPHPSSALHFP 376
+P + M ++P S P QD PR S+F+ R +IA + +A S SS
Sbjct: 2423 RAPSPSSRMGQAPSQSLLPPAQDQPRSPVPSAFSDQSRCLIAQTTPVAGSQSLSSGAVAT 2482
Query: 377 TTSI------LPQTASTYFPHTAIRYPP 398
TTS + + PH+ + PP
Sbjct: 2483 TTSSAGDHNGMLSVPAPGVPHSDVGEPP 2510
Score = 30.8 bits (68), Expect = 2.5
Identities = 28/118 (23%), Positives = 45/118 (38%), Gaps = 9/118 (7%)
Query: 235 SRTPVVTGTGPNFSLGELQGHLAYDLNPASTGLRRTLPSTSSSGSKRHKSGSMEEDVDTS 294
+ T + G P+ + G A P +T +R PS+ + +K+ S ++D D
Sbjct: 286 THTTALAGRSPSPASGRRGEGDAPFSEPGTTSTQR--PSSPETATKQPSSPYEDKDKDKK 343
Query: 295 PGGDYYTSPSSPTSSS-------RNWTEDMEGGISSPVKKTEMDKSPFNSPSPQDSPR 345
SPS SS+ + GG P+ T + + P N PS R
Sbjct: 344 EKSATRPSPSPERSSTGPEPPAPTPLLAERHGGSPQPLATTPLSQEPVNPPSEASPTR 401
Score = 30.8 bits (68), Expect = 2.5
Identities = 32/131 (24%), Positives = 47/131 (35%), Gaps = 25/131 (19%)
Query: 262 PASTGLRRTLPSTSSSGSKRHKSGSMEEDVDTSPGGDYYTSPSSPTSSSRNWTEDMEGGI 321
PA R + S+SSS S S S +S +S SS +SSS + + +
Sbjct: 2600 PAKRKRRSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSPSPAKPGPQAL 2659
Query: 322 SSPV---------KKTEMDKSPFNS----------------PSPQDSPRLSSFTQHHRPV 356
P +++ + P +S PSPQ SPR + R
Sbjct: 2660 PKPASPKKPPPGERRSRSPRKPIDSLRDSRSLSYSPVERRRPSPQPSPRDQQSSSSERGS 2719
Query: 357 IAVHSGIARSP 367
G +RSP
Sbjct: 2720 RRGQRGDSRSP 2730
>gi|148236531 hypothetical protein LOC339779 [Homo sapiens]
Length = 412
Score = 36.6 bits (83), Expect = 0.045
Identities = 43/157 (27%), Positives = 61/157 (38%), Gaps = 19/157 (12%)
Query: 236 RTPVVTGTGPNFSLGELQGHLAYDLNPAST--GLRRTLPSTSSSGSKRHKS--------- 284
+T V+ G P + +L ++L P S GL + P SS+ S+R S
Sbjct: 12 QTSVLPGR-PTWGFSQLVDSSPHNLQPLSPHQGLPPSQPPFSSTQSRRPSSPPPASPSPG 70
Query: 285 ---GSMEEDVDTSPGGDYYTSPSSPTSSSRNWTEDMEGGISSPVKKTEMDKSP----FNS 337
GS + + D +P + PSSPT +N+ SSP P F+
Sbjct: 71 FQFGSCDSNSDFAPHPYSPSLPSSPTFFHQNYLSLPRPRASSPSNHWLYPSPPLTPSFSP 130
Query: 338 PSPQDSPRLSSFTQHHRPVIAVHSGIARSPHPSSALH 374
PQ+S S Q +HS SP PS H
Sbjct: 131 SQPQNSSLPHSPCQSPSHPEELHSSTLTSPGPSPPSH 167
>gi|50959191 rho guanine nucleotide exchange factor 5 [Homo sapiens]
Length = 1597
Score = 36.2 bits (82), Expect = 0.059
Identities = 30/122 (24%), Positives = 48/122 (39%), Gaps = 6/122 (4%)
Query: 262 PASTGLRRTLPSTSSSGSKRHKSGSMEEDVDTSPGGDYYTSPSSPTSSSRNWTEDMEGGI 321
PAS G P+T+ S + + +V T+ P+S + WT +++G
Sbjct: 890 PASAGRTSWPPATARSTESFTSTSRSKSEVSPGMAFSNMTNFLCPSSPTTPWTPELQGPT 949
Query: 322 S-SPVKKTEMDKSPFNSPSPQDSPRLSSFTQHHRPVIAVHSGIARSPHPSSALHFPTTSI 380
S +E ++P P + +P+ + PV G AR P S LH S
Sbjct: 950 SKDEAGVSEHPEAPAREPLRRTTPQQGASGPGRSPV-----GQARQPEKPSHLHLEKASS 1004
Query: 381 LP 382
P
Sbjct: 1005 WP 1006
>gi|114155142 nuclear pore complex-associated protein TPR [Homo
sapiens]
Length = 2363
Score = 35.4 bits (80), Expect = 0.100
Identities = 48/211 (22%), Positives = 85/211 (40%), Gaps = 15/211 (7%)
Query: 185 RERDAEQSGSPRTGMGSDQEDSKPITLDTTDFQESFVTSGVFSVTE--LIQVSRTPVVTG 242
+ER EQ P+ E + ITL TT G+ S ++ + TPVV+
Sbjct: 1621 QERHLEQRDEPQEPSNKVPEQQRQITLKTTPASGE---RGIASTSDPPTANIKPTPVVS- 1676
Query: 243 TGPNFSLGELQGHLA---YDLNPASTGLRRTLPSTSSSGSKRHKSGSMEEDVDTSPGGDY 299
T + + G+ + + P T T P+T+ + + + ++ S G
Sbjct: 1677 TPSKVTAAAMAGNKSTPRASIRPMVTPATVTNPTTTPTATVMPTTQVESQEAMQSEGPVE 1736
Query: 300 YTSPSSPTSSS-RNWTEDMEGGISSPV--KKTEMDKSPFNSPSPQDSPRLSSFTQH--HR 354
+ TS S R+ + +++ IS P+ + + + F P+ Q P++ Q
Sbjct: 1737 HVPVFGSTSGSVRSTSPNVQPSISQPILTVQQQTQATAFVQPTQQSHPQIEPANQELSSN 1796
Query: 355 PVIAVHSGIARSPHPSSALHFPTTSILPQTA 385
V V S P S+A+ F T S P ++
Sbjct: 1797 IVEVVQSSPVERPSTSTAV-FGTVSATPSSS 1826
>gi|167736355 mucin 4 isoform a [Homo sapiens]
Length = 5284
Score = 35.0 bits (79), Expect = 0.13
Identities = 57/229 (24%), Positives = 90/229 (39%), Gaps = 33/229 (14%)
Query: 190 EQSGSPRTGMGSDQEDSKP------ITL-DTTDFQESFVTSG--VFSVTELIQVSR---T 237
+ G+ TG ++ P TL +TT + SF + G +S TEL S T
Sbjct: 455 QSEGAETTGRPHERSSFSPGVSQEIFTLHETTTWPSSFSSKGHTTWSQTELPSTSTGAAT 514
Query: 238 PVVTG---TGPNFSLGELQGHLAYDLNPAS----TGLRRTLPSTSSSGSKRH---KSGSM 287
+VTG TG ++ + ++ P + TLP T+ +G++ ++G+
Sbjct: 515 RLVTGNPSTGTAGTIPRVPSKVSAIGEPGEPTTYSSHSTTLPKTTGAGAQTQWTQETGTT 574
Query: 288 EEDVDTSPGGDYY------TSPSSPTSSSRNWTEDMEGGISSPVKKTEMDKSPFNSPSPQ 341
E + +SP TSPSS R+ ++ + + T S SPQ
Sbjct: 575 GEALLSSPSYSVTQMIKTATSPSSSPMLDRHTSQQI-----TTAPSTNHSTIHSTSTSPQ 629
Query: 342 DSPRLSSFTQHHRPVIAVHSGIARSPHPSSALHFPTTSILPQTASTYFP 390
+SP +S P S RS P + TT TAS + P
Sbjct: 630 ESPAVSQRGHTQAPQTTQESQTTRSVSPMTDTKTVTTPGSSFTASGHSP 678
Score = 34.7 bits (78), Expect = 0.17
Identities = 41/152 (26%), Positives = 65/152 (42%), Gaps = 12/152 (7%)
Query: 237 TPVVTGTGPNFSLGELQGHLAYDLNPASTGLRRTLPST-SSSGSKRHKSGSMEEDVDTSP 295
TP+ + + S G+ D + ASTG +LP T +SS S H + + D ++
Sbjct: 2799 TPLPVTSLSSVSTGDTTPLPVTDTSSASTGHATSLPVTDTSSASTGHATPLPDTDTSSAS 2858
Query: 296 GGDYYTSPSSPTSSSRNWTEDMEGGISSPVKKTEMDKSPFNSPSPQDSPRLSSFTQHHRP 355
G P + TSS+ + S PV T + +P SP S+ T H P
Sbjct: 2859 TGHATLLPVTDTSSA-----SIGHATSLPVTDTSSISTGHATPLHVTSPS-SASTGHATP 2912
Query: 356 VIAVHSGIARSPHPSSALHFPTTSILPQTAST 387
+ + A + H ++ LH + P +AST
Sbjct: 2913 LPVTDTSSASTGH-ANPLHVTS----PSSAST 2939
Score = 34.3 bits (77), Expect = 0.22
Identities = 45/180 (25%), Positives = 67/180 (37%), Gaps = 31/180 (17%)
Query: 228 VTELIQVSR---TPVVTGTGPNFSLGELQGHLAYDLNPASTGLRRTLPSTS--------- 275
VT L VS TP+ + + S G L D + ASTG LP TS
Sbjct: 3043 VTSLSSVSTGDTTPLPVTSPSSASTGHATPLLVTDASSASTGQATPLPVTSLSSVSTGDT 3102
Query: 276 --------SSGSKRHKSGSMEEDVDTSPGGDYYTSPSSPTSSSRNWTEDMEGGISSPVKK 327
SS S H + D ++ GD + P + TSS+ G ++ +
Sbjct: 3103 TPLPVTSPSSASTGHATSLPVTDTSSASTGDTTSLPVTDTSSAYT-------GDTTSLPV 3155
Query: 328 TEMDKSPFNSPSPQDSPRLSSFTQHHRPVIAVHSGIARSPHPSSALHFPTTSILPQTAST 387
T+ S +P SS + H + V + S ++ LH + P +AST
Sbjct: 3156 TDTSSSSTGDTTPLLVTETSSVSTGHATPLLVTDASSASTGHATPLHVTS----PSSAST 3211
Score = 32.7 bits (73), Expect = 0.65
Identities = 42/161 (26%), Positives = 65/161 (40%), Gaps = 14/161 (8%)
Query: 237 TPVVTGTGPNFSLGELQGHLAYDLNPASTGLRRTLPST-SSSGSKRHKSGSMEEDVDTSP 295
TP+ + S G D + ASTG +LP T +SS S H + D ++
Sbjct: 2143 TPLPVTDTSSVSTGHATSLPVTDTSSASTGHATSLPVTDTSSASTGHATPLPVTDTSSAS 2202
Query: 296 GGDYYTSP-SSPTSSSRNW--------TEDMEGGISSPVKKTEMDKSPFNSPSPQDSPRL 346
G P +SP+S+S T G ++P+ T + + +P
Sbjct: 2203 TGQATPLPVTSPSSASTGHAIPLLVTDTSSASTGQATPLPVTSLSSASTGDTTPLPVTDA 2262
Query: 347 SSFTQHHRPVIAVHSGIARSPHPSSALHFPTTSILPQTAST 387
SS + H + V S + S ++ L P TS P +AST
Sbjct: 2263 SSVSTGHATSLPVTSLSSVSTGDTTPL--PVTS--PSSAST 2299
Score = 32.0 bits (71), Expect = 1.1
Identities = 43/173 (24%), Positives = 66/173 (38%), Gaps = 17/173 (9%)
Query: 228 VTELIQVSR---TPVVTGTGPNFSLGELQGHLAYDLNPASTGLRRTLPSTSSSGSKRHKS 284
VT L VS TP+ + + S G L D + ASTG LP T +S +
Sbjct: 1171 VTSLSSVSTGDTTPLPVTSPSSASTGHATPLLVTDTSSASTGHATPLPVTDASSVSTDHA 1230
Query: 285 GSMEEDVDTSPGGDYYTS-PSSPTSSSRNW---------TEDMEGGISSPVKKTEMDKSP 334
S+ + ++ + T P + TSS+ T + G ++P+ T +
Sbjct: 1231 TSLPVTIPSAASTGHTTPLPVTDTSSASTGQATSLLVTDTSSVSTGDTTPLPVTSTSSAS 1290
Query: 335 FNSPSPQDSPRLSSFTQHHRPVIAVHSGIARSPHPSSALHFPTTSILPQTAST 387
+P SS + H + V S S + P TS P +AST
Sbjct: 1291 TGHVTPLHVTSPSSASTGHATPLPVTS--LSSASTGDTMPLPVTS--PSSAST 1339
Score = 32.0 bits (71), Expect = 1.1
Identities = 43/173 (24%), Positives = 66/173 (38%), Gaps = 17/173 (9%)
Query: 228 VTELIQVSR---TPVVTGTGPNFSLGELQGHLAYDLNPASTGLRRTLPSTSSSGSKRHKS 284
VT L VS TP+ + + S G L D + ASTG LP T +S +
Sbjct: 1379 VTSLSSVSTGDTTPLPVTSPSSASTGHATPLLVTDTSSASTGHATPLPVTDASSVSTDHA 1438
Query: 285 GSMEEDVDTSPGGDYYTS-PSSPTSSSRNW---------TEDMEGGISSPVKKTEMDKSP 334
S+ + ++ + T P + TSS+ T + G ++P+ T +
Sbjct: 1439 TSLPVTIPSAASTGHTTPLPVTDTSSASTGQATSLLVTDTSSVSTGDTTPLPVTSTSSAS 1498
Query: 335 FNSPSPQDSPRLSSFTQHHRPVIAVHSGIARSPHPSSALHFPTTSILPQTAST 387
+P SS + H + V S S + P TS P +AST
Sbjct: 1499 TGHVTPLHVTSPSSASTGHATPLPVTS--LSSASTGDTMPLPVTS--PSSAST 1547
Score = 31.2 bits (69), Expect = 1.9
Identities = 43/171 (25%), Positives = 66/171 (38%), Gaps = 11/171 (6%)
Query: 228 VTELIQVSR---TPVVTGTGPNFSLGELQGHLAYDLNPASTGLRRTLPST-SSSGSKRHK 283
VT L VS TP+ + S G D + ASTG LP T +SS S H
Sbjct: 2803 VTSLSSVSTGDTTPLPVTDTSSASTGHATSLPVTDTSSASTGHATPLPDTDTSSASTGHA 2862
Query: 284 SGSMEEDVDTSPGGDYYTSPSSPTSSSRNWTEDMEGGISSPVKKTEMDKSPFNSPSPQDS 343
+ D ++ G + P + TSS + G ++P+ T + +P
Sbjct: 2863 TLLPVTDTSSASIGHATSLPVTDTSS-------ISTGHATPLHVTSPSSASTGHATPLPV 2915
Query: 344 PRLSSFTQHHRPVIAVHSGIARSPHPSSALHFPTTSILPQTASTYFPHTAI 394
SS + H + V S + S ++ L TS +T P T++
Sbjct: 2916 TDTSSASTGHANPLHVTSPSSASTGHATPLPVTDTSSASTGHATPLPVTSL 2966
Score = 30.8 bits (68), Expect = 2.5
Identities = 46/186 (24%), Positives = 73/186 (39%), Gaps = 23/186 (12%)
Query: 237 TPVVTGTGPNFSLGELQGHLAYDLNPASTGLRRTLPST-SSSGSKRHKSGSMEEDVDTSP 295
TP+ + + S G+ D + ASTG +LP T +SS S H + D ++
Sbjct: 1071 TPLPVTSLSSASTGDTTPLPVTDTSSASTGHATSLPVTDTSSVSTGHTTPLPVTDTSSAS 1130
Query: 296 GGDYYTSPSSPTSSSRNWTEDMEGGISSPVKKTEMDKSPFNSPSPQDSPRLSSFTQHHRP 355
G + P + TSS + G ++P+ T+ + +P LSS +
Sbjct: 1131 TGHATSLPVTDTSS-------VSTGHTTPLHVTDASSASTGQATPLPVTSLSSVSTGDTT 1183
Query: 356 VIAVHSGIARSPHPSSALHFPTTSILPQTASTYFPHTAIRYPPHLNPQDPLKDLVSLACD 415
+ V S PSSA T +L T+ H P P+ D S++ D
Sbjct: 1184 PLPVTS-------PSSASTGHATPLL-------VTDTSSASTGHATPL-PVTDASSVSTD 1228
Query: 416 PASQQP 421
A+ P
Sbjct: 1229 HATSLP 1234
Score = 30.8 bits (68), Expect = 2.5
Identities = 46/190 (24%), Positives = 66/190 (34%), Gaps = 26/190 (13%)
Query: 228 VTELIQVSR---TPVVTGTGPNFSLGELQGHLAYDLNPASTGLRRTLPSTSSSGSKRHKS 284
VT L VS TP+ + S G D + STG LP TS+S +
Sbjct: 4003 VTSLSSVSTGDTTPLPVTIPSSASSGHTTSLPVTDASSVSTGHGTPLPVTSTSSAST--- 4059
Query: 285 GSMEEDVDTSPGGDYYTSPSSPTSSSRNWTEDMEGGISSPVKKTEMDKSPFNSPSPQDSP 344
GD P + TSS+ G ++P+ T+ + +P
Sbjct: 4060 ------------GDTTPLPVTDTSSAST-------GHATPLPVTDTSSASTGHATPLPVT 4100
Query: 345 RLSSFTQHHRPVIAVHSGIARSPHPS-SALHFPTTSILPQTASTYFPHTAIRYPPHLNPQ 403
LSS + H +AV S + S S S L T + + T PP Q
Sbjct: 4101 SLSSVSTGHATPLAVSSATSASTVSSDSPLKMETPGMTTPSLKTDGGRRTATSPPPTTSQ 4160
Query: 404 DPLKDLVSLA 413
+ + S A
Sbjct: 4161 TIISTIPSTA 4170
Score = 30.4 bits (67), Expect = 3.2
Identities = 47/178 (26%), Positives = 67/178 (37%), Gaps = 34/178 (19%)
Query: 208 PITLDTTDFQESFVTSGVFSVTELIQVSR---TPVVTGTGPNFSLGELQGHLAYDLNPAS 264
P+T DT+ T VT L VS TP+ + + S G D + AS
Sbjct: 2946 PVT-DTSSASTGHATP--LPVTSLSSVSTGDTTPLPVTSPSSASTGHTTPLPVTDTSSAS 3002
Query: 265 TGLRRTLPSTSSSGSKRHKSGSMEEDVDTSPGGDYYTSPSSPTSSSRNWTEDMEGGISSP 324
TG LP TS+S + GD P + TSS+ G ++P
Sbjct: 3003 TGQATALPVTSTSSAST---------------GDTTPLPVTDTSSAST-------GQATP 3040
Query: 325 VKKTEMD--KSPFNSPSPQDSPRLSSFTQHHRPVIAVHSGIARSPHPSSALHFPTTSI 380
+ T + + +P P SP S+ T H P++ A S A P TS+
Sbjct: 3041 LPVTSLSSVSTGDTTPLPVTSPS-SASTGHATPLLVTD---ASSASTGQATPLPVTSL 3094
Score = 29.6 bits (65), Expect = 5.5
Identities = 47/176 (26%), Positives = 65/176 (36%), Gaps = 23/176 (13%)
Query: 195 PRTGMGSDQEDSKPITLDTTDFQESFVTSGV-FSVTELIQVSR---TPVVTGTGPNFSLG 250
P TG+ S D L TD + VT L VS TP+ + + S G
Sbjct: 1682 PVTGLSSATTDDTT-RLPVTDVSSASTGQATPLPVTSLSSVSTGDTTPLPVTSPSSASTG 1740
Query: 251 ELQGHLAYDLNPASTGLRRTLPST-SSSGSKRH---------KSGSMEE-------DVDT 293
L D + ASTG LP T +SS S H S S ++ DV +
Sbjct: 1741 HASPLLVTDASSASTGQATPLPVTDTSSVSTAHATPLPVTGLSSASTDDTTRLPVTDVSS 1800
Query: 294 SPGGDYYTSP-SSPTSSSRNWTEDMEGGISSPVKKTEMDKSPFNSPSPQDSPRLSS 348
+ G P +SP+S+S T + +S + P PS S +S
Sbjct: 1801 ASTGQAIPLPVTSPSSASTGDTTPLPVTDASSASTGDTTSLPVTIPSSASSGHTTS 1856
Score = 29.6 bits (65), Expect = 5.5
Identities = 38/159 (23%), Positives = 58/159 (36%), Gaps = 8/159 (5%)
Query: 237 TPVVTGTGPNFSLGELQGHLAYDLNPASTGLRRTLPSTS-SSGSKRHKSGSMEEDVDTSP 295
TP+ + S G L+ ASTG LP TS SS S H + D + P
Sbjct: 1903 TPLHVTDASSVSTGHATSLPVTSLSSASTGDTTPLPVTSPSSASSGHTTPLPVTDASSVP 1962
Query: 296 GGDYYTSPSSPTSSSRNWTEDMEGGISSPVKKTEMDKSPFNSPSPQDSPRLSSFTQHHRP 355
G + P + SS + G ++P+ T+ +P SS +
Sbjct: 1963 TGHATSLPVTDASS-------VSTGHATPLPVTDASSVSTGHATPLPVTDTSSVSTGQAT 2015
Query: 356 VIAVHSGIARSPHPSSALHFPTTSILPQTASTYFPHTAI 394
+ V S + S ++ L TS T P T++
Sbjct: 2016 PLPVTSLSSASTGDTTPLPVTDTSSASTGQDTPLPVTSL 2054
Score = 29.6 bits (65), Expect = 5.5
Identities = 47/190 (24%), Positives = 70/190 (36%), Gaps = 28/190 (14%)
Query: 208 PITLDTTDFQESFVTSGVFSVTELIQVSR---TPVVTGTGPNFSLGELQGHLAYDLNPAS 264
P+T D + TS VT L VS TP+ + + S G D + AS
Sbjct: 2258 PVT-DASSVSTGHATS--LPVTSLSSVSTGDTTPLPVTSPSSASTGHATPLHVTDASSAS 2314
Query: 265 TGLRRTLPSTSSSGSKRHKSGSMEEDVDTSPGGDYYTSPSSPTSSSRNWTEDMEGGISSP 324
TG LP TS S + DT+P TSPSS ++ G ++P
Sbjct: 2315 TGHATPLPVTSLSSASTG---------DTTPLP--VTSPSSAST-----------GHATP 2352
Query: 325 VKKTEMDKSPFNSPSPQDSPRLSSFTQHHRPVIAVHSGIARSPHPSSALHFPTTSILPQT 384
+ T+ +P SS + H + V + S ++ L TS
Sbjct: 2353 LHVTDASSVSTGDTTPLPVTSSSSASSGHTTPLPVTDASSASTGDTTPLPVTDTSSASTG 2412
Query: 385 ASTYFPHTAI 394
+T+ P T +
Sbjct: 2413 HATHLPVTGL 2422
Score = 29.6 bits (65), Expect = 5.5
Identities = 35/147 (23%), Positives = 57/147 (38%), Gaps = 11/147 (7%)
Query: 237 TPVVTGTGPNFSLGELQGHLAYDLNPASTGLRRTLPSTSSSGSKRHKSGSMEEDVDTSPG 296
TP+ + + S G+ L D + STG LP T +S + + + DTS
Sbjct: 3503 TPLPVTSLSSVSTGDTTPLLVTDASSVSTGHATPLPVTDTSSASTGDTTRLPV-TDTSSA 3561
Query: 297 GDYYTSP---SSPTSSSRNWTEDMEGGISSPVKKTEMDKSPFNSPSPQDSPRLSSFTQHH 353
+P + P+SSS T + +S V + SPS S+ T H
Sbjct: 3562 STGQATPLPVTIPSSSSSGHTTPLPVTSTSSVSTGHVTPLHVTSPS-------SASTGHV 3614
Query: 354 RPVIAVHSGIARSPHPSSALHFPTTSI 380
P+ + A + H + L +S+
Sbjct: 3615 TPLPVTSTSSASTGHATPLLVTDASSV 3641
Score = 29.3 bits (64), Expect = 7.2
Identities = 36/145 (24%), Positives = 54/145 (37%), Gaps = 10/145 (6%)
Query: 237 TPVVTGTGPNFSLGELQGHLAYDLNPASTGLRRTLPSTSSSGSKRHKSGSMEEDVDTSPG 296
TPV + + S G D + ASTG LP TS S + + + + +S
Sbjct: 3311 TPVPVTSTSSASTGHTTPLPVTDTSSASTGDTTPLPVTSPSSASTGHTTPLHVTIPSSAS 3370
Query: 297 -GDYYTSPSSPTSSSRNWTEDMEGGISSPVKKTEMDKSPFNSPSPQDSPRLSSFTQHHRP 355
GD T P + SS+ G ++P+ T+ +P LSS +
Sbjct: 3371 TGDTSTLPVTGASSAST-------GHATPLPVTDTSSVSTGHATPLPVTSLSSVSTGDTT 3423
Query: 356 VIAVHSGIARSPHPSSALHFPTTSI 380
+ V A S A P TS+
Sbjct: 3424 PLPVTD--ASSASTGQATPLPVTSL 3446
Score = 29.3 bits (64), Expect = 7.2
Identities = 39/168 (23%), Positives = 59/168 (35%), Gaps = 10/168 (5%)
Query: 237 TPVVTGTGPNFSLGELQGHLAYDLNPASTGLRRTLPSTS-SSGSKRHKSGSMEEDVDTSP 295
TP+ + + S G+ D + STG +LP TS SS S H + D +
Sbjct: 3807 TPLPVTSTSSASTGDTTPLPVTDTSSVSTGHATSLPVTSRSSASTGHATPLPVTDTSSVS 3866
Query: 296 GGDYYTSPSSPTSSSRNW---------TEDMEGGISSPVKKTEMDKSPFNSPSPQDSPRL 346
G P + TSS G ++PV T + +P
Sbjct: 3867 TGHATPLPVTSTSSVSTGHATPLPVTSPSSASTGHATPVPVTSTSSASTGDTTPLPVTNA 3926
Query: 347 SSFTQHHRPVIAVHSGIARSPHPSSALHFPTTSILPQTASTYFPHTAI 394
SS + H + V S + S +S L S +T P T++
Sbjct: 3927 SSLSTGHATPLHVTSPSSASRGDTSTLPVTDASSASTGHATPLPLTSL 3974
Score = 28.9 bits (63), Expect = 9.4
Identities = 34/145 (23%), Positives = 56/145 (38%), Gaps = 10/145 (6%)
Query: 228 VTELIQVSR---TPVVTGTGPNFSLGELQGHLAYDLNPASTGLRRTLPSTSSSGSKRHKS 284
VT L VS TP++ + S G D + ASTG LP T +S + ++
Sbjct: 3507 VTSLSSVSTGDTTPLLVTDASSVSTGHATPLPVTDTSSASTGDTTRLPVTDTSSASTGQA 3566
Query: 285 GSMEEDVDTSPGGDYYTSPSSPTSSSRNWTEDMEGGISSPVKKTEMDKSPFNSPSPQDSP 344
+ + +S +T+P TS T + G +P+ T + +P
Sbjct: 3567 TPLPVTIPSSSSSG-HTTPLPVTS-----TSSVSTGHVTPLHVTSPSSASTGHVTPLPVT 3620
Query: 345 RLSS-FTQHHRPVIAVHSGIARSPH 368
SS T H P++ + + H
Sbjct: 3621 STSSASTGHATPLLVTDASSVSTGH 3645
>gi|195546902 suppressor of Ty 5 homolog isoform b [Homo sapiens]
Length = 1083
Score = 34.7 bits (78), Expect = 0.17
Identities = 61/226 (26%), Positives = 83/226 (36%), Gaps = 42/226 (18%)
Query: 192 SGSPRTGMGSDQEDSKPITLDTTDFQESFVTSGVFSVTELIQVSRTPVVTGT----GPNF 247
S +P G GS P+ T Q+ T S T L SRTP +G PN
Sbjct: 769 SQTPMYGSGS----RTPMYGSQTPLQDGSRTPHYGSQTPLHDGSRTPAQSGAWDPNNPNT 824
Query: 248 -SLGELQGHLAYDLNPASTGLRRTLPSTSSSGSKRHKSGSMEEDVDTSPGGDYYTSPSSP 306
S E + A+D P PS + G + +PG Y PSSP
Sbjct: 825 PSRAEEEYEYAFDDEPT--------PSPQAYGGTPNPQ---------TPG---YPDPSSP 864
Query: 307 TSSSRNWTEDMEGGISSPVKKTEMDKSPFNSPSPQDSPRLSSFTQHHRPVIAVHSGIARS 366
+ + + G +P SP+ +PSPQ S + S Q + V +G +
Sbjct: 865 QVNPQ-YNPQTPG---TPAMYNTDQFSPYAAPSPQGSYQPSPSPQSYHQVAPSPAGYQNT 920
Query: 367 PHPSSALHFPTTSILPQTAST------YFPHT-AIRYPPHLNPQDP 405
P+S + PT S + AS Y P T P NP P
Sbjct: 921 HSPAS--YHPTPSPMAYQASPSPSPVGYSPMTPGAPSPGGYNPHTP 964
>gi|195546900 suppressor of Ty 5 homolog isoform a [Homo sapiens]
Length = 1087
Score = 34.7 bits (78), Expect = 0.17
Identities = 61/226 (26%), Positives = 83/226 (36%), Gaps = 42/226 (18%)
Query: 192 SGSPRTGMGSDQEDSKPITLDTTDFQESFVTSGVFSVTELIQVSRTPVVTGT----GPNF 247
S +P G GS P+ T Q+ T S T L SRTP +G PN
Sbjct: 773 SQTPMYGSGS----RTPMYGSQTPLQDGSRTPHYGSQTPLHDGSRTPAQSGAWDPNNPNT 828
Query: 248 -SLGELQGHLAYDLNPASTGLRRTLPSTSSSGSKRHKSGSMEEDVDTSPGGDYYTSPSSP 306
S E + A+D P PS + G + +PG Y PSSP
Sbjct: 829 PSRAEEEYEYAFDDEPT--------PSPQAYGGTPNPQ---------TPG---YPDPSSP 868
Query: 307 TSSSRNWTEDMEGGISSPVKKTEMDKSPFNSPSPQDSPRLSSFTQHHRPVIAVHSGIARS 366
+ + + G +P SP+ +PSPQ S + S Q + V +G +
Sbjct: 869 QVNPQ-YNPQTPG---TPAMYNTDQFSPYAAPSPQGSYQPSPSPQSYHQVAPSPAGYQNT 924
Query: 367 PHPSSALHFPTTSILPQTAST------YFPHT-AIRYPPHLNPQDP 405
P+S + PT S + AS Y P T P NP P
Sbjct: 925 HSPAS--YHPTPSPMAYQASPSPSPVGYSPMTPGAPSPGGYNPHTP 968
>gi|161169023 suppressor of Ty 5 homolog isoform a [Homo sapiens]
Length = 1087
Score = 34.7 bits (78), Expect = 0.17
Identities = 61/226 (26%), Positives = 83/226 (36%), Gaps = 42/226 (18%)
Query: 192 SGSPRTGMGSDQEDSKPITLDTTDFQESFVTSGVFSVTELIQVSRTPVVTGT----GPNF 247
S +P G GS P+ T Q+ T S T L SRTP +G PN
Sbjct: 773 SQTPMYGSGS----RTPMYGSQTPLQDGSRTPHYGSQTPLHDGSRTPAQSGAWDPNNPNT 828
Query: 248 -SLGELQGHLAYDLNPASTGLRRTLPSTSSSGSKRHKSGSMEEDVDTSPGGDYYTSPSSP 306
S E + A+D P PS + G + +PG Y PSSP
Sbjct: 829 PSRAEEEYEYAFDDEPT--------PSPQAYGGTPNPQ---------TPG---YPDPSSP 868
Query: 307 TSSSRNWTEDMEGGISSPVKKTEMDKSPFNSPSPQDSPRLSSFTQHHRPVIAVHSGIARS 366
+ + + G +P SP+ +PSPQ S + S Q + V +G +
Sbjct: 869 QVNPQ-YNPQTPG---TPAMYNTDQFSPYAAPSPQGSYQPSPSPQSYHQVAPSPAGYQNT 924
Query: 367 PHPSSALHFPTTSILPQTAST------YFPHT-AIRYPPHLNPQDP 405
P+S + PT S + AS Y P T P NP P
Sbjct: 925 HSPAS--YHPTPSPMAYQASPSPSPVGYSPMTPGAPSPGGYNPHTP 968
>gi|20149524 suppressor of Ty 5 homolog isoform a [Homo sapiens]
Length = 1087
Score = 34.7 bits (78), Expect = 0.17
Identities = 61/226 (26%), Positives = 83/226 (36%), Gaps = 42/226 (18%)
Query: 192 SGSPRTGMGSDQEDSKPITLDTTDFQESFVTSGVFSVTELIQVSRTPVVTGT----GPNF 247
S +P G GS P+ T Q+ T S T L SRTP +G PN
Sbjct: 773 SQTPMYGSGS----RTPMYGSQTPLQDGSRTPHYGSQTPLHDGSRTPAQSGAWDPNNPNT 828
Query: 248 -SLGELQGHLAYDLNPASTGLRRTLPSTSSSGSKRHKSGSMEEDVDTSPGGDYYTSPSSP 306
S E + A+D P PS + G + +PG Y PSSP
Sbjct: 829 PSRAEEEYEYAFDDEPT--------PSPQAYGGTPNPQ---------TPG---YPDPSSP 868
Query: 307 TSSSRNWTEDMEGGISSPVKKTEMDKSPFNSPSPQDSPRLSSFTQHHRPVIAVHSGIARS 366
+ + + G +P SP+ +PSPQ S + S Q + V +G +
Sbjct: 869 QVNPQ-YNPQTPG---TPAMYNTDQFSPYAAPSPQGSYQPSPSPQSYHQVAPSPAGYQNT 924
Query: 367 PHPSSALHFPTTSILPQTAST------YFPHT-AIRYPPHLNPQDP 405
P+S + PT S + AS Y P T P NP P
Sbjct: 925 HSPAS--YHPTPSPMAYQASPSPSPVGYSPMTPGAPSPGGYNPHTP 968
>gi|26667257 eyes absent 4 isoform d [Homo sapiens]
Length = 639
Score = 34.7 bits (78), Expect = 0.17
Identities = 52/178 (29%), Positives = 73/178 (41%), Gaps = 20/178 (11%)
Query: 259 DLNPASTGLRRTLPSTSSSGSKRHKSGSMEEDVDTSP-----GGDYYTSPSSPTS--SSR 311
DLN S +++T T S S+ S SME SP GGD S S SS
Sbjct: 6 DLNEQS--VKKTC--TESDVSQSQNSRSMEMQDLASPHTLVGGGDTPGSSKLEKSNLSST 61
Query: 312 NWTEDMEGGISSPVKKTEMDKSPFNSPSPQDSPRLSSFTQHHRPVIAVHSGIARSPHPSS 371
+ T + GG + V T N+PS L+ T+ ++S +
Sbjct: 62 SVTTNGTGGENMTVLNTADWLLSCNTPSSATMSLLAVKTE------PLNSSETTATTGDG 115
Query: 372 ALHFPTTSILPQTASTYFPHTAIRYPPHLNPQDPLKDLVSL-ACDPASQQPGPSWYLG 428
AL T S++ T+S Y P +A +Y P L P P ++S A S G + Y G
Sbjct: 116 ALDTFTGSVI--TSSGYSPRSAHQYSPQLYPSKPYPHILSTPAAQTMSAYAGQTQYSG 171
>gi|98991760 eyes absent 4 isoform a [Homo sapiens]
Length = 639
Score = 34.7 bits (78), Expect = 0.17
Identities = 52/178 (29%), Positives = 73/178 (41%), Gaps = 20/178 (11%)
Query: 259 DLNPASTGLRRTLPSTSSSGSKRHKSGSMEEDVDTSP-----GGDYYTSPSSPTS--SSR 311
DLN S +++T T S S+ S SME SP GGD S S SS
Sbjct: 6 DLNEQS--VKKTC--TESDVSQSQNSRSMEMQDLASPHTLVGGGDTPGSSKLEKSNLSST 61
Query: 312 NWTEDMEGGISSPVKKTEMDKSPFNSPSPQDSPRLSSFTQHHRPVIAVHSGIARSPHPSS 371
+ T + GG + V T N+PS L+ T+ ++S +
Sbjct: 62 SVTTNGTGGENMTVLNTADWLLSCNTPSSATMSLLAVKTE------PLNSSETTATTGDG 115
Query: 372 ALHFPTTSILPQTASTYFPHTAIRYPPHLNPQDPLKDLVSL-ACDPASQQPGPSWYLG 428
AL T S++ T+S Y P +A +Y P L P P ++S A S G + Y G
Sbjct: 116 ALDTFTGSVI--TSSGYSPRSAHQYSPQLYPSKPYPHILSTPAAQTMSAYAGQTQYSG 171
>gi|110556636 tankyrase 1-binding protein 1 [Homo sapiens]
Length = 1729
Score = 34.7 bits (78), Expect = 0.17
Identities = 38/132 (28%), Positives = 53/132 (40%), Gaps = 16/132 (12%)
Query: 301 TSPSSPTSSS--RNWTEDMEGGISSPVK-KTEMDKSPFNSPSPQD---SPRLSSFTQHHR 354
T+P S+ R W++ EG + SP + + E K+P P D + L+
Sbjct: 206 TAPRDEDGSTLFRGWSQ--EGPVKSPAECREEHSKTPEERSLPSDLAFNGDLAKAASSEL 263
Query: 355 PVIAVHSGIARSPHPSSALHFPTTSILPQTASTYFPHTAIRYPPHLNPQD---PLKDLVS 411
P I SP PSS P + LP AS P + PHL+P D P +
Sbjct: 264 PADISKPWIPSSPAPSSENGGPASPGLPAEASGSGPGS-----PHLHPPDKSSPCHSQLL 318
Query: 412 LACDPASQQPGP 423
A P + Q P
Sbjct: 319 EAQTPEASQASP 330
>gi|112821681 G protein-regulated inducer of neurite outgrowth 1
[Homo sapiens]
Length = 1008
Score = 34.7 bits (78), Expect = 0.17
Identities = 33/114 (28%), Positives = 44/114 (38%), Gaps = 4/114 (3%)
Query: 238 PVVTGTGPNFSLGELQGHLAYDLNPASTGLRRTLPSTSSSGSKRHKSGSMEEDVDTSPGG 297
PV +GTG SLG L +PAS G T+P+T K G
Sbjct: 331 PVSSGTGAPGSLGRLDPTCLGMADPASVGNVETVPATKEDSRFLGKMDPASSGEGRPVSG 390
Query: 298 DYYTSPSSPTS-SSRNWTEDMEGGISSPVKKTEMDKSPFNSP---SPQDSPRLS 347
T+ S+ T +S + M G PV +MD P SP + R+S
Sbjct: 391 HTDTTASAKTDLTSLKNVDPMSSGKVDPVSLGKMDPMCSGKPELLSPGQAERVS 444
>gi|215422375 neural precursor cell expressed, developmentally
down-regulated 9 isoform 3 [Homo sapiens]
Length = 834
Score = 34.3 bits (77), Expect = 0.22
Identities = 43/164 (26%), Positives = 63/164 (38%), Gaps = 35/164 (21%)
Query: 196 RTGMGSDQEDSKPITLDTTDFQESFVTSGVFSVTELIQVSRTPVVTGTGPNFS--LGELQ 253
RTG G E D D S T GV+ + P + GP FS +GE++
Sbjct: 159 RTGHGYVYEYPSRYQKDVYDIPPSHTTQGVYDI---------PPSSAKGPVFSVPVGEIK 209
Query: 254 GHLAYDLNPASTGLRRTLPSTSSSGSKRHKSGSMEEDV------------DTSPGGDYYT 301
YD+ P + G+ PS R ++G E+D D P G Y
Sbjct: 210 PQGVYDI-PPTKGVYAIPPSAC-----RDEAGLREKDYDFPPPMRQAGRPDLRPEGVYDI 263
Query: 302 SPSSPTSSSRN----WTEDMEGGISSPVKKTEMDKSPFNSPSPQ 341
P+ + ++ + D+ G + PV + SP N P PQ
Sbjct: 264 PPTCTKPAGKDLHVKYNCDIPGA-AEPVARRHQSLSP-NHPPPQ 305
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.315 0.132 0.398
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,525,398
Number of Sequences: 37866
Number of extensions: 1023035
Number of successful extensions: 4625
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 141
Number of HSP's that attempted gapping in prelim test: 4251
Number of HSP's gapped (non-prelim): 385
length of query: 428
length of database: 18,247,518
effective HSP length: 105
effective length of query: 323
effective length of database: 14,271,588
effective search space: 4609722924
effective search space used: 4609722924
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.