Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 4506525
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|4506525 rhomboid protease 1 [Homo sapiens]
(438 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|4506525 rhomboid protease 1 [Homo sapiens] 905 0.0
gi|21264326 rhomboid protease 3 [Homo sapiens] 441 e-124
gi|54144654 rhomboid protease 2 [Homo sapiens] 187 2e-47
gi|93352558 rhomboid, veinlet-like 6 isoform 2 [Homo sapiens] 43 5e-04
gi|93352556 rhomboid, veinlet-like 6 isoform 1 [Homo sapiens] 43 5e-04
gi|190341097 rhomboid family 1 [Homo sapiens] 43 5e-04
gi|239757942 PREDICTED: hypothetical protein XP_002346387 [Homo ... 35 0.18
gi|239747120 PREDICTED: hypothetical protein XP_002343918 [Homo ... 33 0.51
gi|239747111 PREDICTED: hypothetical protein XP_002343913 [Homo ... 33 0.51
gi|21618327 forkhead box I1 isoform a [Homo sapiens] 33 0.51
gi|21618329 forkhead box I1 isoform b [Homo sapiens] 33 0.51
gi|100913220 alpha 1 type XVI collagen precursor [Homo sapiens] 33 0.51
gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Ho... 33 0.67
gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Ho... 33 0.67
gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Ho... 33 0.67
gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Hom... 33 0.67
gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Hom... 33 0.67
gi|238859653 pleckstrin homology domain containing family A memb... 32 1.5
gi|10864037 myosin light chain 2a [Homo sapiens] 32 1.5
gi|4505939 DNA-directed RNA polymerase II A [Homo sapiens] 31 1.9
gi|155030232 proline, glutamic acid and leucine rich protein 1 [... 31 1.9
gi|153281158 dual specificity phosphatase 8 [Homo sapiens] 31 1.9
gi|40353727 synaptopodin isoform A [Homo sapiens] 31 2.5
gi|4506857 chemokine (C-X3-C motif) ligand 1 [Homo sapiens] 30 3.3
gi|7706577 PSMC3 interacting protein isoform 2 [Homo sapiens] 30 3.3
gi|32261320 PSMC3 interacting protein isoform 1 [Homo sapiens] 30 3.3
gi|194097352 actinin, alpha 1 isoform c [Homo sapiens] 30 3.3
gi|144922631 tigger transposable element derived 5 [Homo sapiens] 30 3.3
gi|7662234 rab11-family interacting protein 3 isoform 1 [Homo sa... 30 4.3
gi|119943102 CREB binding protein isoform b [Homo sapiens] 30 4.3
>gi|4506525 rhomboid protease 1 [Homo sapiens]
Length = 438
Score = 905 bits (2340), Expect = 0.0
Identities = 438/438 (100%), Positives = 438/438 (100%)
Query: 1 MGRVEDGGTTEELEDWDPGTSALPAPGIKQGPREQTGTGPLSQKCWEPEPDAPSQPGPAL 60
MGRVEDGGTTEELEDWDPGTSALPAPGIKQGPREQTGTGPLSQKCWEPEPDAPSQPGPAL
Sbjct: 1 MGRVEDGGTTEELEDWDPGTSALPAPGIKQGPREQTGTGPLSQKCWEPEPDAPSQPGPAL 60
Query: 61 WSRGRARTQALAGGSSLQQLDPENTGFIGADTFTGLVHSHELPLDPAKLDMLVALAQSNE 120
WSRGRARTQALAGGSSLQQLDPENTGFIGADTFTGLVHSHELPLDPAKLDMLVALAQSNE
Sbjct: 61 WSRGRARTQALAGGSSLQQLDPENTGFIGADTFTGLVHSHELPLDPAKLDMLVALAQSNE 120
Query: 121 QGQVCYQELVDLISSKRSSSFKRAIANGQRALPRDGPLDEPGLGVYKRFVRYVAYEILPC 180
QGQVCYQELVDLISSKRSSSFKRAIANGQRALPRDGPLDEPGLGVYKRFVRYVAYEILPC
Sbjct: 121 QGQVCYQELVDLISSKRSSSFKRAIANGQRALPRDGPLDEPGLGVYKRFVRYVAYEILPC 180
Query: 181 EVDRRWYFYRHRSCPPPVFMASVTLAQIIVFLCYGARLNKWVLQTYHPEYMKSPLVYHPG 240
EVDRRWYFYRHRSCPPPVFMASVTLAQIIVFLCYGARLNKWVLQTYHPEYMKSPLVYHPG
Sbjct: 181 EVDRRWYFYRHRSCPPPVFMASVTLAQIIVFLCYGARLNKWVLQTYHPEYMKSPLVYHPG 240
Query: 241 HRARAWRFLTYMFMHVGLEQLGFNALLQLMIGVPLEMVHGLLRISLLYLAGVLAGSLTVS 300
HRARAWRFLTYMFMHVGLEQLGFNALLQLMIGVPLEMVHGLLRISLLYLAGVLAGSLTVS
Sbjct: 241 HRARAWRFLTYMFMHVGLEQLGFNALLQLMIGVPLEMVHGLLRISLLYLAGVLAGSLTVS 300
Query: 301 ITDMRAPVVGGSGGVYALCSAHLANVVMNWAGMRCPYKLLRMVLALVCMSSEVGRAVWLR 360
ITDMRAPVVGGSGGVYALCSAHLANVVMNWAGMRCPYKLLRMVLALVCMSSEVGRAVWLR
Sbjct: 301 ITDMRAPVVGGSGGVYALCSAHLANVVMNWAGMRCPYKLLRMVLALVCMSSEVGRAVWLR 360
Query: 361 FSPPLPASGPQPSFMAHLAGAVVGVSMGLTILRSYEERLRDQCGWWVVLLAYGTFLLFAV 420
FSPPLPASGPQPSFMAHLAGAVVGVSMGLTILRSYEERLRDQCGWWVVLLAYGTFLLFAV
Sbjct: 361 FSPPLPASGPQPSFMAHLAGAVVGVSMGLTILRSYEERLRDQCGWWVVLLAYGTFLLFAV 420
Query: 421 FWNVFAYDLLGAHIPPPP 438
FWNVFAYDLLGAHIPPPP
Sbjct: 421 FWNVFAYDLLGAHIPPPP 438
>gi|21264326 rhomboid protease 3 [Homo sapiens]
Length = 404
Score = 441 bits (1135), Expect = e-124
Identities = 205/360 (56%), Positives = 265/360 (73%)
Query: 79 QLDPENTGFIGADTFTGLVHSHELPLDPAKLDMLVALAQSNEQGQVCYQELVDLISSKRS 138
Q DP NTG+I F L+ SH LDP K ++L+ALA S+ GQ+ YQ+ V L+S+KRS
Sbjct: 45 QFDPGNTGYISTGKFRSLLESHSSKLDPHKREVLLALADSHADGQIGYQDFVSLMSNKRS 104
Query: 139 SSFKRAIANGQRALPRDGPLDEPGLGVYKRFVRYVAYEILPCEVDRRWYFYRHRSCPPPV 198
+SF++AI G R L L+E GL + +R +R+VAYE LP E+DR+WY+ + CPPP
Sbjct: 105 NSFRQAILQGNRRLSSKALLEEKGLSLSQRLIRHVAYETLPREIDRKWYYDSYTCCPPPW 164
Query: 199 FMASVTLAQIIVFLCYGARLNKWVLQTYHPEYMKSPLVYHPGHRARAWRFLTYMFMHVGL 258
FM +VTL ++ FL G L ++VLQ HP Y+K+ LVYHP RA+ WR+LTY+FMH G+
Sbjct: 165 FMITVTLLEVAFFLYNGVSLGQFVLQVTHPRYLKNSLVYHPQLRAQVWRYLTYIFMHAGI 224
Query: 259 EQLGFNALLQLMIGVPLEMVHGLLRISLLYLAGVLAGSLTVSITDMRAPVVGGSGGVYAL 318
E LG N +LQL++GVPLEMVHG RI L+Y+AGV+AGSL VS+ DM APVVG SGGVYAL
Sbjct: 225 EHLGLNVVLQLLVGVPLEMVHGATRIGLVYVAGVVAGSLAVSVADMTAPVVGSSGGVYAL 284
Query: 319 CSAHLANVVMNWAGMRCPYKLLRMVLALVCMSSEVGRAVWLRFSPPLPASGPQPSFMAHL 378
SAHLAN+VMNW+GM+C +KLLRM +AL+CMS E GRAVWLRF P P PSF+AHL
Sbjct: 285 VSAHLANIVMNWSGMKCQFKLLRMAVALICMSMEFGRAVWLRFHPSAYPPCPHPSFVAHL 344
Query: 379 AGAVVGVSMGLTILRSYEERLRDQCGWWVVLLAYGTFLLFAVFWNVFAYDLLGAHIPPPP 438
G VG+++G+ +LR+YE+RL+DQ WW+ + Y F+LFAVFWN+FAY LL +PPPP
Sbjct: 345 GGVAVGITLGVVVLRNYEQRLQDQSLWWIFVAMYTVFVLFAVFWNIFAYTLLDLKLPPPP 404
>gi|54144654 rhomboid protease 2 [Homo sapiens]
Length = 303
Score = 187 bits (475), Expect = 2e-47
Identities = 101/261 (38%), Positives = 159/261 (60%), Gaps = 7/261 (2%)
Query: 167 KRFVRYVAYEILPCEVDRRWYFYRHRSCPPPVFMASVTLAQIIVFLCYGA--RLNKWVLQ 224
K+ R V+ +LP E R Y R PPPVF+ S++LA++ VF+ Y +W+
Sbjct: 43 KKVHRIVSKWMLP-EKSRGTYLERANCFPPPVFIISISLAELAVFIYYAVWKPQKQWI-- 99
Query: 225 TYHPEYMKSPLVYHPGHRARAWRFLTYMFMHVGLEQLGFNALLQLMIGVPLEMVHGLLRI 284
T ++SP +Y P R AWRF++YM +H G++ + N +QL++G+PLEMVH LR+
Sbjct: 100 TLDTGILESPFIYSPEKREEAWRFISYMLVHAGVQHILGNLCMQLVLGIPLEMVHKGLRV 159
Query: 285 SLLYLAGVLAGSLTVSITDMRAPVVGGSGGVYALCSAHLANVVMNWAGMRCPYKLLRMVL 344
L+YLAGV+AGSL SI D +VG SGGVYAL + NV++N+ M + + R+++
Sbjct: 160 GLVYLAGVIAGSLASSIFDPLRYLVGASGGVYALMGGYFMNVLVNFQEMIPAFGIFRLLI 219
Query: 345 ALVCMSSEVGRAVWLRFSPPLPASGPQPSFMAHLAGAVVGVSMGLTILRSYEERLRDQCG 404
++ + ++G A++ RF +P G SF AH+AG G+S+G T+ +++ L
Sbjct: 220 IILIIVLDMGFALYRRFF--VPEDGSPVSFAAHIAGGFAGMSIGYTVFSCFDKALLKDPR 277
Query: 405 WWVVLLAYGTFLLFAVFWNVF 425
+W+ + AY +LFAVF+N+F
Sbjct: 278 FWIAIAAYLACVLFAVFFNIF 298
>gi|93352558 rhomboid, veinlet-like 6 isoform 2 [Homo sapiens]
Length = 827
Score = 43.1 bits (100), Expect = 5e-04
Identities = 37/181 (20%), Positives = 72/181 (39%), Gaps = 17/181 (9%)
Query: 246 WRFLTYMFMHVGLEQLGFNALLQLMIGVPLEMVHGLLRISLLYLAGVLAGSLTVSITDMR 305
+R +F+H G+ + + Q+ I LE + G RI+++++ + G+L +I
Sbjct: 626 YRLWLSLFLHAGVVHCLVSVVFQMTILRDLEKLAGWHRIAIIFILSGITGNLASAIFLPY 685
Query: 306 APVVGGSGGVYALCSAHLANVVMNWAGMRCPYKLLRMVLALVCMSSEVGRAVWLRFSPPL 365
VG +G + L + + +W + P+K + A+V G W+
Sbjct: 686 RAEVGPAGSQFGLLACLFVELFQSWPLLERPWKAFLNLSAIVLFLFICGLLPWI------ 739
Query: 366 PASGPQPSFMAHLAGAVVGVSMGLTILR----SYEERLRDQCGWWVVLLAYGTFLLFAVF 421
+AH+ G + G+ + L ++ R + V LLA+ V
Sbjct: 740 -------DNIAHIFGFLSGLLLAFAFLPYITFGTSDKYRKRALILVSLLAFAGLFAALVL 792
Query: 422 W 422
W
Sbjct: 793 W 793
>gi|93352556 rhomboid, veinlet-like 6 isoform 1 [Homo sapiens]
Length = 856
Score = 43.1 bits (100), Expect = 5e-04
Identities = 37/181 (20%), Positives = 72/181 (39%), Gaps = 17/181 (9%)
Query: 246 WRFLTYMFMHVGLEQLGFNALLQLMIGVPLEMVHGLLRISLLYLAGVLAGSLTVSITDMR 305
+R +F+H G+ + + Q+ I LE + G RI+++++ + G+L +I
Sbjct: 655 YRLWLSLFLHAGVVHCLVSVVFQMTILRDLEKLAGWHRIAIIFILSGITGNLASAIFLPY 714
Query: 306 APVVGGSGGVYALCSAHLANVVMNWAGMRCPYKLLRMVLALVCMSSEVGRAVWLRFSPPL 365
VG +G + L + + +W + P+K + A+V G W+
Sbjct: 715 RAEVGPAGSQFGLLACLFVELFQSWPLLERPWKAFLNLSAIVLFLFICGLLPWI------ 768
Query: 366 PASGPQPSFMAHLAGAVVGVSMGLTILR----SYEERLRDQCGWWVVLLAYGTFLLFAVF 421
+AH+ G + G+ + L ++ R + V LLA+ V
Sbjct: 769 -------DNIAHIFGFLSGLLLAFAFLPYITFGTSDKYRKRALILVSLLAFAGLFAALVL 821
Query: 422 W 422
W
Sbjct: 822 W 822
>gi|190341097 rhomboid family 1 [Homo sapiens]
Length = 855
Score = 43.1 bits (100), Expect = 5e-04
Identities = 30/147 (20%), Positives = 61/147 (41%), Gaps = 13/147 (8%)
Query: 246 WRFLTYMFMHVGLEQLGFNALLQLMIGVPLEMVHGLLRISLLYLAGVLAGSLTVSITDMR 305
+R +F+H G+ + Q+ + LE + G RI+++YL + G+L +I
Sbjct: 654 YRLWLSLFLHAGILHCLVSICFQMTVLRDLEKLAGWHRIAIIYLLSGVTGNLASAIFLPY 713
Query: 306 APVVGGSGGVYALCSAHLANVVMNWAGMRCPYKLLRMVLALVCMSSEVGRAVWLRFSPPL 365
VG +G + + + + +W + P++ +LA+V G W+
Sbjct: 714 RAEVGPAGSQFGILACLFVELFQSWQILARPWRAFFKLLAVVLFLFTFGLLPWI------ 767
Query: 366 PASGPQPSFMAHLAGAVVGVSMGLTIL 392
AH++G + G+ + L
Sbjct: 768 -------DNFAHISGFISGLFLSFAFL 787
>gi|239757942 PREDICTED: hypothetical protein XP_002346387 [Homo
sapiens]
Length = 239
Score = 34.7 bits (78), Expect = 0.18
Identities = 31/95 (32%), Positives = 38/95 (40%), Gaps = 18/95 (18%)
Query: 1 MGRVEDGGTTEELEDWDPGTSALPAPGIKQGPREQTGTGPLSQKCWEPEP---------- 50
+GRV E G +A+P P + G G GPL W P P
Sbjct: 55 VGRVASRARARTWEGGKEGHAAVPQPATRSGRLGVWG-GPLRHS-WAPRPRQASQTRGGG 112
Query: 51 DAPSQPGPALWSRGRARTQALA------GGSSLQQ 79
PS PGPA GR+R++ A GGS L Q
Sbjct: 113 GGPSLPGPAGRPSGRSRSRVGARGRLPSGGSHLPQ 147
>gi|239747120 PREDICTED: hypothetical protein XP_002343918 [Homo
sapiens]
Length = 139
Score = 33.1 bits (74), Expect = 0.51
Identities = 30/97 (30%), Positives = 37/97 (38%), Gaps = 16/97 (16%)
Query: 10 TEELEDWDPGTSALPAPGIKQGPREQTGTGPLSQKCWEPEPDAPSQPGPALWSRGRARTQ 69
T+ L W PAP I + GP W P+ P+ GP LW + RTQ
Sbjct: 18 TQPLAPWTMAAED-PAPRIL----DYGSRGPSLPASWTKAPEDPAPSGPGLWQQ---RTQ 69
Query: 70 ALAGGSSLQQLDPENTGFIGADTFTGLVHSHELPLDP 106
LA + + DP A GL H PL P
Sbjct: 70 PLASWTMAPE-DP-------ASLRHGLWHQRTQPLAP 98
>gi|239747111 PREDICTED: hypothetical protein XP_002343913 [Homo
sapiens]
Length = 139
Score = 33.1 bits (74), Expect = 0.51
Identities = 30/97 (30%), Positives = 37/97 (38%), Gaps = 16/97 (16%)
Query: 10 TEELEDWDPGTSALPAPGIKQGPREQTGTGPLSQKCWEPEPDAPSQPGPALWSRGRARTQ 69
T+ L W PAP I + GP W P+ P+ GP LW + RTQ
Sbjct: 18 TQPLAPWTMAAED-PAPRIL----DYGSRGPSLPASWTKAPEDPAPSGPGLWQQ---RTQ 69
Query: 70 ALAGGSSLQQLDPENTGFIGADTFTGLVHSHELPLDP 106
LA + + DP A GL H PL P
Sbjct: 70 PLASWTMAPE-DP-------ASLRHGLWHQRTQPLAP 98
>gi|21618327 forkhead box I1 isoform a [Homo sapiens]
Length = 378
Score = 33.1 bits (74), Expect = 0.51
Identities = 20/84 (23%), Positives = 34/84 (40%), Gaps = 3/84 (3%)
Query: 18 PGTSALPAPGIKQGPREQTGTGPLSQKCWEPEPDAPSQPGPALWSRGRARTQALAGGSSL 77
P + L PG+ P ++TG L+ + P + + G W+ GGS L
Sbjct: 294 PTSHPLVTPGLSPEPSDKTGQNSLTFNSFSPLTNLSNHSGGGDWANPMPTNMLSYGGSVL 353
Query: 78 QQLDPENTGFIGADTFTGLVHSHE 101
Q P F + +G+++ E
Sbjct: 354 SQFSPH---FYNSVNTSGVLYPRE 374
>gi|21618329 forkhead box I1 isoform b [Homo sapiens]
Length = 283
Score = 33.1 bits (74), Expect = 0.51
Identities = 20/84 (23%), Positives = 34/84 (40%), Gaps = 3/84 (3%)
Query: 18 PGTSALPAPGIKQGPREQTGTGPLSQKCWEPEPDAPSQPGPALWSRGRARTQALAGGSSL 77
P + L PG+ P ++TG L+ + P + + G W+ GGS L
Sbjct: 199 PTSHPLVTPGLSPEPSDKTGQNSLTFNSFSPLTNLSNHSGGGDWANPMPTNMLSYGGSVL 258
Query: 78 QQLDPENTGFIGADTFTGLVHSHE 101
Q P F + +G+++ E
Sbjct: 259 SQFSPH---FYNSVNTSGVLYPRE 279
>gi|100913220 alpha 1 type XVI collagen precursor [Homo sapiens]
Length = 1604
Score = 33.1 bits (74), Expect = 0.51
Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 4/56 (7%)
Query: 7 GGTTEELEDWDPGTSALPAPGIKQGPREQTG----TGPLSQKCWEPEPDAPSQPGP 58
G E+ E PG+ LP P GPR + G +G + ++ +P P PGP
Sbjct: 1111 GSAGEKGEPGPPGSEGLPGPPGPAGPRGERGPQGNSGEKGDQGFQGQPGFPGPPGP 1166
>gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Homo
sapiens]
Length = 1818
Score = 32.7 bits (73), Expect = 0.67
Identities = 19/42 (45%), Positives = 20/42 (47%), Gaps = 4/42 (9%)
Query: 18 PGTSALPAPGIKQGPREQTG-TGPLSQKCWEPEPDAPSQPGP 58
PG LP P QGP+ G TGP QK P P PGP
Sbjct: 1512 PGPPGLPGP---QGPKGNKGSTGPAGQKGDSGLPGPPGSPGP 1550
>gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Homo
sapiens]
Length = 1767
Score = 32.7 bits (73), Expect = 0.67
Identities = 19/42 (45%), Positives = 20/42 (47%), Gaps = 4/42 (9%)
Query: 18 PGTSALPAPGIKQGPREQTG-TGPLSQKCWEPEPDAPSQPGP 58
PG LP P QGP+ G TGP QK P P PGP
Sbjct: 1461 PGPPGLPGP---QGPKGNKGSTGPAGQKGDSGLPGPPGSPGP 1499
>gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Homo
sapiens]
Length = 1806
Score = 32.7 bits (73), Expect = 0.67
Identities = 19/42 (45%), Positives = 20/42 (47%), Gaps = 4/42 (9%)
Query: 18 PGTSALPAPGIKQGPREQTG-TGPLSQKCWEPEPDAPSQPGP 58
PG LP P QGP+ G TGP QK P P PGP
Sbjct: 1500 PGPPGLPGP---QGPKGNKGSTGPAGQKGDSGLPGPPGSPGP 1538
>gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Homo
sapiens]
Length = 1487
Score = 32.7 bits (73), Expect = 0.67
Identities = 22/88 (25%), Positives = 36/88 (40%), Gaps = 8/88 (9%)
Query: 19 GTSALPAPGIKQGPREQTG-TGPLSQKCWEPEPDAPSQPGPALWSRGRARTQALAGGSSL 77
G + +P P GPR ++G TGP P P PGP + + G
Sbjct: 1176 GANGIPGPIGPPGPRGRSGETGPAGPPGNPGPPGPPGPPGPGI-------DMSAFAGLGP 1228
Query: 78 QQLDPENTGFIGADTFTGLVHSHELPLD 105
++ P+ ++ AD G + H+ +D
Sbjct: 1229 REKGPDPLQYMRADQAAGGLRQHDAEVD 1256
>gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Homo
sapiens]
Length = 1418
Score = 32.7 bits (73), Expect = 0.67
Identities = 22/88 (25%), Positives = 36/88 (40%), Gaps = 8/88 (9%)
Query: 19 GTSALPAPGIKQGPREQTG-TGPLSQKCWEPEPDAPSQPGPALWSRGRARTQALAGGSSL 77
G + +P P GPR ++G TGP P P PGP + + G
Sbjct: 1107 GANGIPGPIGPPGPRGRSGETGPAGPPGNPGPPGPPGPPGPGI-------DMSAFAGLGP 1159
Query: 78 QQLDPENTGFIGADTFTGLVHSHELPLD 105
++ P+ ++ AD G + H+ +D
Sbjct: 1160 REKGPDPLQYMRADQAAGGLRQHDAEVD 1187
>gi|238859653 pleckstrin homology domain containing family A member
4 isoform 2 [Homo sapiens]
Length = 583
Score = 31.6 bits (70), Expect = 1.5
Identities = 20/51 (39%), Positives = 25/51 (49%), Gaps = 5/51 (9%)
Query: 15 DWDPGTSALPAPGI-KQGPREQTGTG--PLSQKCWEPEPDAPSQPGPALWS 62
DW P L P ++GP + G G P S + W EP +QPGP L S
Sbjct: 283 DWGPQRQTLSRPPTPRRGPPSEAGGGKPPRSPQHWSQEPR--TQPGPPLES 331
>gi|10864037 myosin light chain 2a [Homo sapiens]
Length = 175
Score = 31.6 bits (70), Expect = 1.5
Identities = 15/60 (25%), Positives = 29/60 (48%)
Query: 75 SSLQQLDPENTGFIGADTFTGLVHSHELPLDPAKLDMLVALAQSNEQGQVCYQELVDLIS 134
S+ + DP G + D F L+ + PA+++ + AL + G + Y+ L +I+
Sbjct: 109 SAFRMFDPSGKGVVNKDEFKQLLLTQADKFSPAEVEQMFALTPMDLAGNIDYKSLCYIIT 168
>gi|4505939 DNA-directed RNA polymerase II A [Homo sapiens]
Length = 1970
Score = 31.2 bits (69), Expect = 1.9
Identities = 15/56 (26%), Positives = 20/56 (35%), Gaps = 4/56 (7%)
Query: 8 GTTEELEDWDPGTSALPAPGIK----QGPREQTGTGPLSQKCWEPEPDAPSQPGPA 59
G T W P + PG + +G P W P P +P PGP+
Sbjct: 1523 GATPAYGAWSPSVGSGMTPGAAGFSPSAASDASGFSPGYSPAWSPTPGSPGSPGPS 1578
>gi|155030232 proline, glutamic acid and leucine rich protein 1 [Homo
sapiens]
Length = 1130
Score = 31.2 bits (69), Expect = 1.9
Identities = 36/124 (29%), Positives = 49/124 (39%), Gaps = 20/124 (16%)
Query: 4 VEDGGTTEEL-EDWDP--GTSALPAPGIKQGPREQTGTGPLSQKCWEPEPDAPS------ 54
VE+ GT EE D P ALP+ G + E GP Q+ E EP AP
Sbjct: 1009 VEEPGTEEERGADTAPTLAPEALPSQGEVEREGESPAAGPPPQELVEEEPSAPPTLLEEE 1068
Query: 55 --------QPGPALWSRGRARTQALAGGSSLQQLDPENTGFIGADTFTGLVHSHELPLDP 106
QP P + T+ A +LQ+ + ++T + AD F E P P
Sbjct: 1069 TEDGSDKVQPPPETPAEEEMETETEA--EALQEKEQDDTAAMLAD-FIDCPPDDEKPPPP 1125
Query: 107 AKLD 110
+ D
Sbjct: 1126 TEPD 1129
>gi|153281158 dual specificity phosphatase 8 [Homo sapiens]
Length = 625
Score = 31.2 bits (69), Expect = 1.9
Identities = 17/40 (42%), Positives = 20/40 (50%), Gaps = 6/40 (15%)
Query: 19 GTSALPAPGIKQGPREQTGTGPLSQKCWEPEPDAPSQPGP 58
G SAL APG+ GP + G G W P D+P P P
Sbjct: 487 GLSALSAPGLP-GPGQPAGPG-----AWAPPLDSPGTPSP 520
>gi|40353727 synaptopodin isoform A [Homo sapiens]
Length = 903
Score = 30.8 bits (68), Expect = 2.5
Identities = 16/46 (34%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
Query: 18 PGTSALPAPGIKQGPREQTGTGPLSQKCWEPEPDAPSQPGPALWSR 63
PG++A+P PR GP S C P P+ P P L+ R
Sbjct: 810 PGSAAVPGAAFAPIPRSPLPAGPSS--CTSPRSPLPAPPRPFLYRR 853
>gi|4506857 chemokine (C-X3-C motif) ligand 1 [Homo sapiens]
Length = 397
Score = 30.4 bits (67), Expect = 3.3
Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 13/67 (19%)
Query: 8 GTTEELEDWDPGTSALPAPGIKQGPREQTGTGPLSQKCWEPEP---------DAPSQPGP 58
GT+ EL G+S P P+ Q G GP+ + + P AP QPGP
Sbjct: 152 GTSPELPTGVTGSSGTRLPPT---PKAQDG-GPVGTELFRVPPVSTAATWQSSAPHQPGP 207
Query: 59 ALWSRGR 65
+LW+ +
Sbjct: 208 SLWAEAK 214
>gi|7706577 PSMC3 interacting protein isoform 2 [Homo sapiens]
Length = 217
Score = 30.4 bits (67), Expect = 3.3
Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 4/63 (6%)
Query: 62 SRGRARTQALAGGSSLQQLDPENTGFIGADTFTGLVHSHELPLDPAKLDMLVALAQSNEQ 121
S+GRA A A G L+ L +N + D F L H L K ++ L Q +Q
Sbjct: 2 SKGRAEAAAGAAGILLRYLQEQNRPYSSQDVFGNLQREHGL----GKAVVVKTLEQLAQQ 57
Query: 122 GQV 124
G++
Sbjct: 58 GKI 60
>gi|32261320 PSMC3 interacting protein isoform 1 [Homo sapiens]
Length = 205
Score = 30.4 bits (67), Expect = 3.3
Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 4/63 (6%)
Query: 62 SRGRARTQALAGGSSLQQLDPENTGFIGADTFTGLVHSHELPLDPAKLDMLVALAQSNEQ 121
S+GRA A A G L+ L +N + D F L H L K ++ L Q +Q
Sbjct: 2 SKGRAEAAAGAAGILLRYLQEQNRPYSSQDVFGNLQREHGL----GKAVVVKTLEQLAQQ 57
Query: 122 GQV 124
G++
Sbjct: 58 GKI 60
>gi|194097352 actinin, alpha 1 isoform c [Homo sapiens]
Length = 887
Score = 30.4 bits (67), Expect = 3.3
Identities = 16/79 (20%), Positives = 36/79 (45%)
Query: 62 SRGRARTQALAGGSSLQQLDPENTGFIGADTFTGLVHSHELPLDPAKLDMLVALAQSNEQ 121
++G ++ Q +S D + TG + D F + S + A+ ++++ N
Sbjct: 740 AKGISQEQMNEFRASFNHFDRKKTGMMDTDDFRACLISMGYNMGEAEFARIMSIVDPNRL 799
Query: 122 GQVCYQELVDLISSKRSSS 140
G V +Q +D +S + + +
Sbjct: 800 GVVTFQAFIDFMSRETADT 818
>gi|144922631 tigger transposable element derived 5 [Homo sapiens]
Length = 593
Score = 30.4 bits (67), Expect = 3.3
Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Query: 18 PGTSALPAPGIKQGPREQTGTGPLSQKCWEPEPDAPSQPG 57
P S P P +K+ P +G GPL + P P P++ G
Sbjct: 144 PAPSPAPGPPVKEEPALPSGAGPLPDRA--PAPPPPAEGG 181
>gi|7662234 rab11-family interacting protein 3 isoform 1 [Homo
sapiens]
Length = 756
Score = 30.0 bits (66), Expect = 4.3
Identities = 18/57 (31%), Positives = 25/57 (43%), Gaps = 9/57 (15%)
Query: 2 GRVEDGGTTEELEDWDPGTSALPAPGIKQGPREQTGTGPLSQKCWEPEPDAPSQPGP 58
G DGG W G PAPG++ GPR+ + P + + +P PGP
Sbjct: 61 GAAADGGAR-----WSAG----PAPGLEGGPRDPGPSAPPPRSGPRGQLASPDAPGP 108
>gi|119943102 CREB binding protein isoform b [Homo sapiens]
Length = 2404
Score = 30.0 bits (66), Expect = 4.3
Identities = 33/132 (25%), Positives = 47/132 (35%), Gaps = 18/132 (13%)
Query: 2 GRVEDGGTTEELEDWDPGTSALPAPGIKQGPREQT--------GTGPLSQKC----WEPE 49
G+V L P S LP P + Q P T G L P+
Sbjct: 784 GQVPGAALPNPLNMLGPQASQLPCPPVTQSPLHPTPPPASTAAGMPSLQHTTPPGMTPPQ 843
Query: 50 PDAPSQPGPALWSRGRARTQALAGGSSLQQLDPENTGFIGADTFTGLVHSHELPLDPAKL 109
P AP+QP + S G+ T GS ++T + A + + P+ P
Sbjct: 844 PAAPTQPSTPVSSSGQTPTP--TPGSVPSATQTQSTPTVQAAAQAQVTPQPQTPVQPPS- 900
Query: 110 DMLVALAQSNEQ 121
VA QS++Q
Sbjct: 901 ---VATPQSSQQ 909
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.323 0.139 0.449
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,819,451
Number of Sequences: 37866
Number of extensions: 982561
Number of successful extensions: 3555
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 39
Number of HSP's that attempted gapping in prelim test: 3477
Number of HSP's gapped (non-prelim): 128
length of query: 438
length of database: 18,247,518
effective HSP length: 105
effective length of query: 333
effective length of database: 14,271,588
effective search space: 4752438804
effective search space used: 4752438804
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.