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Search of human proteins with 4505931
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|4505931 DNA-directed DNA polymerase beta [Homo sapiens]
(335 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|4505931 DNA-directed DNA polymerase beta [Homo sapiens] 672 0.0
gi|7019491 DNA-directed DNA polymerase lambda [Homo sapiens] 189 4e-48
gi|7019493 DNA-directed DNA polymerase mu [Homo sapiens] 110 1e-24
gi|63054850 terminal deoxynucleotidyltransferase isoform 1 [Homo... 95 1e-19
gi|63054852 terminal deoxynucleotidyltransferase isoform 2 [Homo... 91 1e-18
gi|38044112 restin isoform b [Homo sapiens] 34 0.16
gi|4506751 restin isoform a [Homo sapiens] 34 0.16
gi|153945790 myosin, heavy chain 8, skeletal muscle, perinatal [... 33 0.47
gi|153791586 myosin, heavy chain 2, skeletal muscle, adult [Homo... 32 1.0
gi|153792663 myosin, heavy chain 2, skeletal muscle, adult [Homo... 32 1.0
gi|56549696 E1A binding protein p400 [Homo sapiens] 31 1.4
gi|115527082 myosin, heavy chain 1, skeletal muscle, adult [Homo... 31 1.8
gi|224465184 nuclear factor I/A isoform 4 [Homo sapiens] 30 2.3
gi|224465182 nuclear factor I/A isoform 3 [Homo sapiens] 30 2.3
gi|30840980 nuclear factor I/A isoform 2 [Homo sapiens] 30 2.3
gi|197927284 nuclear factor I/A isoform 1 [Homo sapiens] 30 2.3
gi|58219032 hypothetical protein LOC389766 [Homo sapiens] 30 2.3
gi|38678534 zinc finger protein 684 [Homo sapiens] 30 3.0
gi|156151413 MUS81 endonuclease homolog [Homo sapiens] 29 5.2
gi|203098098 shroom family member 3 protein [Homo sapiens] 29 5.2
gi|93004092 nuclear factor I/B [Homo sapiens] 29 5.2
gi|45439327 periplakin [Homo sapiens] 29 5.2
gi|239755627 PREDICTED: similar to cag [Homo sapiens] 29 6.8
gi|239750125 PREDICTED: hypothetical protein XP_002347296 [Homo ... 29 6.8
gi|239744433 PREDICTED: hypothetical protein XP_002343159 [Homo ... 29 6.8
gi|110611903 myosin, heavy polypeptide 4, skeletal muscle [Homo ... 29 6.8
gi|100814339 coiled-coil domain containing 146 [Homo sapiens] 29 6.8
gi|221316741 N-acetyltransferase 10 isoform b [Homo sapiens] 28 8.8
gi|221316723 N-acetyltransferase 10 isoform a [Homo sapiens] 28 8.8
gi|56549649 nuclear factor I/X (CCAAT-binding transcription fact... 28 8.8
>gi|4505931 DNA-directed DNA polymerase beta [Homo sapiens]
Length = 335
Score = 672 bits (1735), Expect = 0.0
Identities = 335/335 (100%), Positives = 335/335 (100%)
Query: 1 MSKRKAPQETLNGGITDMLTELANFEKNVSQAIHKYNAYRKAASVIAKYPHKIKSGAEAK 60
MSKRKAPQETLNGGITDMLTELANFEKNVSQAIHKYNAYRKAASVIAKYPHKIKSGAEAK
Sbjct: 1 MSKRKAPQETLNGGITDMLTELANFEKNVSQAIHKYNAYRKAASVIAKYPHKIKSGAEAK 60
Query: 61 KLPGVGTKIAEKIDEFLATGKLRKLEKIRQDDTSSSINFLTRVSGIGPSAARKFVDEGIK 120
KLPGVGTKIAEKIDEFLATGKLRKLEKIRQDDTSSSINFLTRVSGIGPSAARKFVDEGIK
Sbjct: 61 KLPGVGTKIAEKIDEFLATGKLRKLEKIRQDDTSSSINFLTRVSGIGPSAARKFVDEGIK 120
Query: 121 TLEDLRKNEDKLNHHQRIGLKYFGDFEKRIPREEMLQMQDIVLNEVKKVDSEYIATVCGS 180
TLEDLRKNEDKLNHHQRIGLKYFGDFEKRIPREEMLQMQDIVLNEVKKVDSEYIATVCGS
Sbjct: 121 TLEDLRKNEDKLNHHQRIGLKYFGDFEKRIPREEMLQMQDIVLNEVKKVDSEYIATVCGS 180
Query: 181 FRRGAESSGDMDVLLTHPSFTSESTKQPKLLHQVVEQLQKVHFITDTLSKGETKFMGVCQ 240
FRRGAESSGDMDVLLTHPSFTSESTKQPKLLHQVVEQLQKVHFITDTLSKGETKFMGVCQ
Sbjct: 181 FRRGAESSGDMDVLLTHPSFTSESTKQPKLLHQVVEQLQKVHFITDTLSKGETKFMGVCQ 240
Query: 241 LPSKNDEKEYPHRRIDIRLIPKDQYYCGVLYFTGSDIFNKNMRAHALEKGFTINEYTIRP 300
LPSKNDEKEYPHRRIDIRLIPKDQYYCGVLYFTGSDIFNKNMRAHALEKGFTINEYTIRP
Sbjct: 241 LPSKNDEKEYPHRRIDIRLIPKDQYYCGVLYFTGSDIFNKNMRAHALEKGFTINEYTIRP 300
Query: 301 LGVTGVAGEPLPVDSEKDIFDYIQWKYREPKDRSE 335
LGVTGVAGEPLPVDSEKDIFDYIQWKYREPKDRSE
Sbjct: 301 LGVTGVAGEPLPVDSEKDIFDYIQWKYREPKDRSE 335
>gi|7019491 DNA-directed DNA polymerase lambda [Homo sapiens]
Length = 575
Score = 189 bits (479), Expect = 4e-48
Identities = 118/345 (34%), Positives = 188/345 (54%), Gaps = 29/345 (8%)
Query: 2 SKRKAPQETLNGGITDMLTELANFEKNVSQAIHKYNA--YRKAASVIAKYPHKIKSGAEA 59
S +KA L+ IT+ L LA K S K+ A Y KA + + + + S EA
Sbjct: 245 SSQKATNHNLH--ITEKLEVLA---KAYSVQGDKWRALGYAKAINALKSFHKPVTSYQEA 299
Query: 60 KKLPGVGTKIAEKIDEFLATGKLRKLEKIRQDDTSSSINFLTRVSGIGPSAARKFVDEGI 119
+PG+G ++AEKI E L +G LRKL+ I ++ + + + G G A+ + +G
Sbjct: 300 CSIPGIGKRMAEKIIEILESGHLRKLDHI--SESVPVLELFSNIWGAGTKTAQMWYQQGF 357
Query: 120 KTLEDLRKNEDKLNHHQRIGLKYFGDFEKRIPREEMLQMQDIVLNEVKKVDSEYIATVCG 179
++LED+R ++ L Q IGLK++ DF +R+PREE +++ V + +S + CG
Sbjct: 358 RSLEDIR-SQASLTTQQAIGLKHYSDFLERMPREEATEIEQTVQKAAQAFNSGLLCVACG 416
Query: 180 SFRRGAESSGDMDVLLTHPSFTSESTKQPKLLHQVVEQLQKVHFITDTLSKGE-----TK 234
S+RRG + GD+DVL+THP + + ++++ L++ F+TD L E K
Sbjct: 417 SYRRGKATCGDVDVLITHP----DGRSHRGIFSRLLDSLRQEGFLTDDLVSQEENGQQQK 472
Query: 235 FMGVCQLPSKNDEKEYPHRRIDIRLIPKDQYYCGVLYFTGSDIFNKNMRAHALEKGFTIN 294
++GVC+LP HRR+DI ++P ++ C +LYFTGS FN++MRA A KG +++
Sbjct: 473 YLGVCRLPGPGRR----HRRLDIIVVPYSEFACALLYFTGSAHFNRSMRALAKTKGMSLS 528
Query: 295 EYTIRPLGVTGV------AGEPLPVDSEKDIFDYIQWKYREPKDR 333
E+ + V G LP +EKD+F + YREP +R
Sbjct: 529 EHALSTAVVRNTHGCKVGPGRVLPTPTEKDVFRLLGLPYREPAER 573
>gi|7019493 DNA-directed DNA polymerase mu [Homo sapiens]
Length = 494
Score = 110 bits (276), Expect = 1e-24
Identities = 88/359 (24%), Positives = 167/359 (46%), Gaps = 36/359 (10%)
Query: 3 KRKAPQETLNGGITD---MLTELANFEKNVSQAIHKYNAYRKAASVIAKYPHKIKSGAEA 59
+R P N G+++ +L E A FE + + + + +AASV+ P + + ++
Sbjct: 144 QRPTPLTHHNTGLSEALEILAEAAGFEGSEGRLL----TFCRAASVLKALPSPVTTLSQL 199
Query: 60 KKLPGVGTKIAEKIDEFLATGKLRKLEKIRQDDTSSSINFLTRVSGIGPSAARKFVDEGI 119
+ LP G + + E L G ++E++R+ + ++ T++ G+G A ++ EG+
Sbjct: 200 QGLPHFGEHSSRVVQELLEHGVCEEVERVRRSERYQTMKLFTQIFGVGVKTADRWYREGL 259
Query: 120 KTLEDLRKNEDKLNHHQRIGLKYFGDFEKRIPREEMLQMQDIVLNEVKKVDSEYIATVCG 179
+TL+DLR+ KL Q+ GL++ D + R ++ +Q +V V + T+ G
Sbjct: 260 RTLDDLREQPQKLTQQQKAGLQHHQDLSTPVLRSDVDALQQVVEEAVGQALPGATVTLTG 319
Query: 180 SFRRGAESSGDMDVLLTHPSFTSESTKQPKLLHQVVEQ-LQKVHFITDTLSKGETKF--- 235
FRRG D+D L+THP E+ P+++ ++ +Q L H + + T+
Sbjct: 320 GFRRGKLQGHDVDFLITHPKEGQEAGLLPRVMCRLQDQGLILYHQHQHSCCESPTRLAQQ 379
Query: 236 ---------MGVCQLP---------SKNDEKEYPHRRIDIRLIPKDQYYCGVLYFTGSDI 277
+ +LP S + R+D+ + P Q+ +L +TGS +
Sbjct: 380 SHMDAFERSFCIFRLPQPPGAAVGGSTRPCPSWKAVRVDLVVAPVSQFPFALLGWTGSKL 439
Query: 278 FNKNMRAHA-LEKGFTINEYTI-RPLGVTGVAGEPLPVDSEKDIFDYIQWKYREPKDRS 334
F + +R + EKG +N + + P T SE+DIF ++ +Y P+ R+
Sbjct: 440 FQRELRRFSRKEKGLWLNSHGLFDPEQKTF-----FQAASEEDIFRHLGLEYLPPEQRN 493
>gi|63054850 terminal deoxynucleotidyltransferase isoform 1 [Homo
sapiens]
Length = 509
Score = 94.7 bits (234), Expect = 1e-19
Identities = 81/345 (23%), Positives = 152/345 (44%), Gaps = 36/345 (10%)
Query: 17 DMLTELANFEKNVSQAIHKYNAYRKAASVIAKYPHKIKSGAEAKKLPGVGTKIAEKIDEF 76
D+L E F +N + + +AASV+ P I S + + +P +G+K+ I+E
Sbjct: 173 DILAENCEFRENEDSCV----TFMRAASVLKSLPFTIISMKDTEGIPCLGSKVKGIIEEI 228
Query: 77 LATGKLRKLEKIRQDDTSSSINFLTRVSGIGPSAARKFVDEGIKTLEDLRKNED-KLNHH 135
+ G+ +++ + D+ S T V G+G + K+ G +TL +R ++ K
Sbjct: 229 IEDGESSEVKAVLNDERYQSFKLFTSVFGVGLKTSEKWFRMGFRTLSKVRSDKSLKFTRM 288
Query: 136 QRIGLKYFGDFEKRIPREEMLQMQDIVLNEVKKVDSEYIATVCGSFRRGAESSGDMDVLL 195
Q+ G Y+ D + R E + +V V + T+ G FRRG + D+D L+
Sbjct: 289 QKAGFLYYEDLVSCVTRAEAEAVSVLVKEAVWAFLPDAFVTMTGGFRRGKKMGHDVDFLI 348
Query: 196 THPSFTSESTKQPK----------------LLHQVVEQLQKVHFITDTLSKGETKFMGVC 239
T P T + + + L+ E+L+ D L + F+ +
Sbjct: 349 TSPGSTEDEEQLLQKVMNLWEKKGLLLYYDLVESTFEKLRLPSRKVDALDHFQKCFL-IF 407
Query: 240 QLP---------SKNDEKEYPHRRIDIRLIPKDQYYCGVLYFTGSDIFNKNMRAHAL-EK 289
+LP S + K + R+D+ L P ++ +L +TGS F +++R +A E+
Sbjct: 408 KLPRQRVDSDQSSWQEGKTWKAIRVDLVLCPYERRAFALLGWTGSRQFERDLRRYATHER 467
Query: 290 GFTINEYTIRPLGVTGVAGEPLPVDSEKDIFDYIQWKYREPKDRS 334
++ + + L +SE++IF ++ Y EP +R+
Sbjct: 468 KMILDNHAL----YDKTKRIFLKAESEEEIFAHLGLDYIEPWERN 508
>gi|63054852 terminal deoxynucleotidyltransferase isoform 2 [Homo
sapiens]
Length = 508
Score = 91.3 bits (225), Expect = 1e-18
Identities = 81/345 (23%), Positives = 152/345 (44%), Gaps = 37/345 (10%)
Query: 17 DMLTELANFEKNVSQAIHKYNAYRKAASVIAKYPHKIKSGAEAKKLPGVGTKIAEKIDEF 76
D+L E F +N + + +AASV+ P I S + + +P +G+K+ I+E
Sbjct: 173 DILAENCEFRENEDSCV----TFMRAASVLKSLPFTIISMKDTEGIPCLGSKVKGIIEEI 228
Query: 77 LATGKLRKLEKIRQDDTSSSINFLTRVSGIGPSAARKFVDEGIKTLEDLRKNED-KLNHH 135
+ G+ +++ + D+ S T V G+G + K+ G +TL +R ++ K
Sbjct: 229 IEDGESSEVKAVLNDERYQSFKLFTSVFGVGLKTSEKWFRMGFRTLSKVRSDKSLKFTRM 288
Query: 136 QRIGLKYFGDFEKRIPREEMLQMQDIVLNEVKKVDSEYIATVCGSFRRGAESSGDMDVLL 195
Q+ G Y+ D + R E + +V V + T+ G FRRG + D+D L+
Sbjct: 289 QKAGFLYYEDLVSCVTRAEAEAVSVLVKEAVWAFLPDAFVTMTGGFRRGKKMGHDVDFLI 348
Query: 196 THPSFTSESTKQPK----------------LLHQVVEQLQKVHFITDTLSKGETKFMGVC 239
T P T + + + L+ E+L+ D L + F+ +
Sbjct: 349 TSPGSTEDEEQLLQKVMNLWEKKGLLLYYDLVESTFEKLRLPSRKVDALDHFQKCFL-IF 407
Query: 240 QLP---------SKNDEKEYPHRRIDIRLIPKDQYYCGVLYFTGSDIFNKNMRAHAL-EK 289
+LP S + K + R+D+ L P ++ +L +TGS F +++R +A E+
Sbjct: 408 KLPRQRVDSDQSSWQEGKTWKAIRVDLVLCPYERRAFALLGWTGSR-FERDLRRYATHER 466
Query: 290 GFTINEYTIRPLGVTGVAGEPLPVDSEKDIFDYIQWKYREPKDRS 334
++ + + L +SE++IF ++ Y EP +R+
Sbjct: 467 KMILDNHAL----YDKTKRIFLKAESEEEIFAHLGLDYIEPWERN 507
>gi|38044112 restin isoform b [Homo sapiens]
Length = 1392
Score = 34.3 bits (77), Expect = 0.16
Identities = 26/152 (17%), Positives = 64/152 (42%), Gaps = 9/152 (5%)
Query: 71 EKIDEFLATGKLRKLEKIRQDDTSSSINFLTRVSGIGPSAARKFVDEGIKTLEDLRKNED 130
+ ++E + +L +E + ++ I L + + +E +K E+L ++ D
Sbjct: 1086 KNVEELNKSKELLTVENQKMEEFRKEIETLKQAAAQKSQQLSALQEENVKLAEELGRSRD 1145
Query: 131 KLNHHQRIGLKYFGDFEKRIPREEMLQMQDIVLNEVKKVDSEYIA---TVCGSFRRGAES 187
++ HQ++ + E+ + ++L+M+ +K D E + ++ + E
Sbjct: 1146 EVTSHQKL------EEERSVLNNQLLEMKKRESKFIKDADEEKASLQKSISITSALLTEK 1199
Query: 188 SGDMDVLLTHPSFTSESTKQPKLLHQVVEQLQ 219
+++ L + K LH VV+ L+
Sbjct: 1200 DAELEKLRNEVTVLRGENASAKSLHSVVQTLE 1231
>gi|4506751 restin isoform a [Homo sapiens]
Length = 1427
Score = 34.3 bits (77), Expect = 0.16
Identities = 26/152 (17%), Positives = 64/152 (42%), Gaps = 9/152 (5%)
Query: 71 EKIDEFLATGKLRKLEKIRQDDTSSSINFLTRVSGIGPSAARKFVDEGIKTLEDLRKNED 130
+ ++E + +L +E + ++ I L + + +E +K E+L ++ D
Sbjct: 1121 KNVEELNKSKELLTVENQKMEEFRKEIETLKQAAAQKSQQLSALQEENVKLAEELGRSRD 1180
Query: 131 KLNHHQRIGLKYFGDFEKRIPREEMLQMQDIVLNEVKKVDSEYIA---TVCGSFRRGAES 187
++ HQ++ + E+ + ++L+M+ +K D E + ++ + E
Sbjct: 1181 EVTSHQKL------EEERSVLNNQLLEMKKRESKFIKDADEEKASLQKSISITSALLTEK 1234
Query: 188 SGDMDVLLTHPSFTSESTKQPKLLHQVVEQLQ 219
+++ L + K LH VV+ L+
Sbjct: 1235 DAELEKLRNEVTVLRGENASAKSLHSVVQTLE 1266
>gi|153945790 myosin, heavy chain 8, skeletal muscle, perinatal [Homo
sapiens]
Length = 1937
Score = 32.7 bits (73), Expect = 0.47
Identities = 50/201 (24%), Positives = 88/201 (43%), Gaps = 38/201 (18%)
Query: 57 AEAKKLPGVGTKIAEKIDEFLATGKLRKLEKIRQDDTSSSINFLTRVSGIGPSAARKFVD 116
A+ +KL +++ + ID+ T L K+EK + + N ++G+ + A+ +
Sbjct: 941 AKKRKLEDECSELKKDIDDLELT--LAKVEKEKHATENKVKNLTEEMAGLDETIAKLSKE 998
Query: 117 EGI------KTLEDLRKNEDKLNHHQRIGLK---YFGDFEKRIPREEMLQMQDIVLNEVK 167
+ +TL+DL+ EDK+N + K D E + +E+ L+M L K
Sbjct: 999 KKALQETHQQTLDDLQAEEDKVNILTKAKTKLEQQVDDLEGSLEQEKKLRMD---LERAK 1055
Query: 168 KVDSEYIATVCGSFRRGAESSGDMDVLLTHPSFTSESTKQPKLLHQVVEQLQKVHF-ITD 226
+ + G + ES+ DM E+ KQ Q+ E+L+K F I++
Sbjct: 1056 R-------KLEGDLKLAQESTMDM-----------ENDKQ-----QLDEKLEKKEFEISN 1092
Query: 227 TLSKGETKFMGVCQLPSKNDE 247
+SK E + QL K E
Sbjct: 1093 LISKIEDEQAVEIQLQKKIKE 1113
>gi|153791586 myosin, heavy chain 2, skeletal muscle, adult [Homo
sapiens]
Length = 1941
Score = 31.6 bits (70), Expect = 1.0
Identities = 29/111 (26%), Positives = 55/111 (49%), Gaps = 11/111 (9%)
Query: 57 AEAKKLPGVGTKIAEKIDEFLATGKLRKLEKIRQDDTSSSINFLTRVSGIGPSAAR---- 112
A+ +KL +++ + ID+ T L K+EK + + N ++G+ + A+
Sbjct: 944 AKKRKLEDECSELKKDIDDLELT--LAKVEKEKHATENKVKNLTEEMAGLDETIAKLTKE 1001
Query: 113 -KFVDEGIK-TLEDLRKNEDKLNHHQRIGLK---YFGDFEKRIPREEMLQM 158
K + E + TL+DL+ EDK+N + +K D E + +E+ L+M
Sbjct: 1002 KKALQEAHQQTLDDLQAEEDKVNTLTKAKIKLEQQVDDLEGSLEQEKKLRM 1052
>gi|153792663 myosin, heavy chain 2, skeletal muscle, adult [Homo
sapiens]
Length = 1941
Score = 31.6 bits (70), Expect = 1.0
Identities = 29/111 (26%), Positives = 55/111 (49%), Gaps = 11/111 (9%)
Query: 57 AEAKKLPGVGTKIAEKIDEFLATGKLRKLEKIRQDDTSSSINFLTRVSGIGPSAAR---- 112
A+ +KL +++ + ID+ T L K+EK + + N ++G+ + A+
Sbjct: 944 AKKRKLEDECSELKKDIDDLELT--LAKVEKEKHATENKVKNLTEEMAGLDETIAKLTKE 1001
Query: 113 -KFVDEGIK-TLEDLRKNEDKLNHHQRIGLK---YFGDFEKRIPREEMLQM 158
K + E + TL+DL+ EDK+N + +K D E + +E+ L+M
Sbjct: 1002 KKALQEAHQQTLDDLQAEEDKVNTLTKAKIKLEQQVDDLEGSLEQEKKLRM 1052
>gi|56549696 E1A binding protein p400 [Homo sapiens]
Length = 3122
Score = 31.2 bits (69), Expect = 1.4
Identities = 36/174 (20%), Positives = 66/174 (37%), Gaps = 8/174 (4%)
Query: 1 MSKRKAPQETLNGGITDMLTELANFEKNVSQAIHKYNAYRKAASVI-----AKYPHKIKS 55
+S ++ L G D++ E+A + S A ++ V A +P K +
Sbjct: 1985 VSGNSIEEKLLKNGTKDLIREVAAQGNDYSMAFLTQRTIQELFEVYSPMDDAGFPVKAEE 2044
Query: 56 GAEAKKLPGVGTKIAEKIDEFLATGKLRKLEKIRQDDTSSSINFLT--RVSGIGPSAARK 113
+ P V IA KI L+ +E + +D S+ + + +
Sbjct: 2045 FVVLSQEPSVTETIAPKIARPFIEA-LKSIEYLEEDAQKSAQEGVLGPHTDALSSDSENM 2103
Query: 114 FVDEGIKTLEDLRKNEDKLNHHQRIGLKYFGDFEKRIPREEMLQMQDIVLNEVK 167
DE LE+L ++L ++ L Y F I +E+ +D V+ V+
Sbjct: 2104 PCDEEPSQLEELADFMEQLTPIEKYALNYLELFHTSIEQEKERNSEDAVMTAVR 2157
>gi|115527082 myosin, heavy chain 1, skeletal muscle, adult [Homo
sapiens]
Length = 1939
Score = 30.8 bits (68), Expect = 1.8
Identities = 28/111 (25%), Positives = 55/111 (49%), Gaps = 11/111 (9%)
Query: 57 AEAKKLPGVGTKIAEKIDEFLATGKLRKLEKIRQDDTSSSINFLTRVSGIGPSAAR---- 112
A+ +KL +++ + ID+ T L K+EK + + N ++G+ + A+
Sbjct: 942 AKKRKLEDECSELKKDIDDLELT--LAKVEKEKHATENKVKNLTEEMAGLDETIAKLTKE 999
Query: 113 -KFVDEGIK-TLEDLRKNEDKLNHHQRIGLK---YFGDFEKRIPREEMLQM 158
K + E + TL+DL+ EDK+N + +K D E + +E+ ++M
Sbjct: 1000 KKALQEAHQQTLDDLQAEEDKVNTLTKAKIKLEQQVDDLEGSLEQEKKIRM 1050
>gi|224465184 nuclear factor I/A isoform 4 [Homo sapiens]
Length = 554
Score = 30.4 bits (67), Expect = 2.3
Identities = 16/56 (28%), Positives = 29/56 (51%)
Query: 141 KYFGDFEKRIPREEMLQMQDIVLNEVKKVDSEYIATVCGSFRRGAESSGDMDVLLT 196
KYF EKR+ +EE ++D +L+E +V ++ + + R+ D +LT
Sbjct: 84 KYFKKHEKRMSKEEERAVKDELLSEKPEVKQKWASRLLAKLRKDIRPEYREDFVLT 139
>gi|224465182 nuclear factor I/A isoform 3 [Homo sapiens]
Length = 501
Score = 30.4 bits (67), Expect = 2.3
Identities = 16/56 (28%), Positives = 29/56 (51%)
Query: 141 KYFGDFEKRIPREEMLQMQDIVLNEVKKVDSEYIATVCGSFRRGAESSGDMDVLLT 196
KYF EKR+ +EE ++D +L+E +V ++ + + R+ D +LT
Sbjct: 31 KYFKKHEKRMSKEEERAVKDELLSEKPEVKQKWASRLLAKLRKDIRPEYREDFVLT 86
>gi|30840980 nuclear factor I/A isoform 2 [Homo sapiens]
Length = 498
Score = 30.4 bits (67), Expect = 2.3
Identities = 16/56 (28%), Positives = 29/56 (51%)
Query: 141 KYFGDFEKRIPREEMLQMQDIVLNEVKKVDSEYIATVCGSFRRGAESSGDMDVLLT 196
KYF EKR+ +EE ++D +L+E +V ++ + + R+ D +LT
Sbjct: 39 KYFKKHEKRMSKEEERAVKDELLSEKPEVKQKWASRLLAKLRKDIRPEYREDFVLT 94
>gi|197927284 nuclear factor I/A isoform 1 [Homo sapiens]
Length = 509
Score = 30.4 bits (67), Expect = 2.3
Identities = 16/56 (28%), Positives = 29/56 (51%)
Query: 141 KYFGDFEKRIPREEMLQMQDIVLNEVKKVDSEYIATVCGSFRRGAESSGDMDVLLT 196
KYF EKR+ +EE ++D +L+E +V ++ + + R+ D +LT
Sbjct: 39 KYFKKHEKRMSKEEERAVKDELLSEKPEVKQKWASRLLAKLRKDIRPEYREDFVLT 94
>gi|58219032 hypothetical protein LOC389766 [Homo sapiens]
Length = 101
Score = 30.4 bits (67), Expect = 2.3
Identities = 16/52 (30%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Query: 145 DFEKRIPREEMLQMQDIVLNEVKKVDSEYIATVCGSFRRGAESSGDMDVLLT 196
+F K + +L+M I LNE ++V + + + SF RGA+ GD+ +++
Sbjct: 32 NFNKESKKSNLLKMHGISLNEAQEVLARNLNVM--SFTRGADVRGDLQPVIS 81
>gi|38678534 zinc finger protein 684 [Homo sapiens]
Length = 378
Score = 30.0 bits (66), Expect = 3.0
Identities = 22/79 (27%), Positives = 36/79 (45%), Gaps = 3/79 (3%)
Query: 219 QKVHFIT-DTLSKGETKFM-GVCQLPSKNDEKEYPHRRIDIRLIPKDQYYCGVLYFTGSD 276
+K H T + GE F+ C + + H+R+ P + CG FT +
Sbjct: 198 RKAHLATHQKIHNGERPFVCNDCGKAFMHKAQLVVHQRLHTGEKPYECSQCGKT-FTWNS 256
Query: 277 IFNKNMRAHALEKGFTINE 295
FN+++++H LEK F E
Sbjct: 257 SFNQHVKSHTLEKSFECKE 275
>gi|156151413 MUS81 endonuclease homolog [Homo sapiens]
Length = 551
Score = 29.3 bits (64), Expect = 5.2
Identities = 14/39 (35%), Positives = 22/39 (56%)
Query: 39 YRKAASVIAKYPHKIKSGAEAKKLPGVGTKIAEKIDEFL 77
++KA + +YP ++SG EAK L G + +DE L
Sbjct: 43 FQKALRSLRRYPLPLRSGKEAKILQHFGDGLCRMLDERL 81
>gi|203098098 shroom family member 3 protein [Homo sapiens]
Length = 1996
Score = 29.3 bits (64), Expect = 5.2
Identities = 41/187 (21%), Positives = 80/187 (42%), Gaps = 34/187 (18%)
Query: 17 DMLTELANFEKNVSQAIHKYNAYRKAASVIAKYPHKIKSGAEAK-------KL-PGVGTK 68
++L ++ V++ + + K A +I HK+++ EAK KL +G +
Sbjct: 1758 ELLNKIKEMPAEVNEEEEQADVNEKKAELIGSLTHKLETLQEAKGSLLTDIKLNNALGEE 1817
Query: 69 IAEKIDEFLATGKLRKLEKIRQ--DDTSSSINFLTR-----------VSGIGPSAA---R 112
+ I E K + +K R D +N L +SG+G A+ R
Sbjct: 1818 VEALISELC---KPNEFDKYRMFIGDLDKVVNLLLSLSGRLARVENVLSGLGEDASNEER 1874
Query: 113 KFVDEGIKTL----EDLRKNEDKLNHHQRIGLKYFGDF---EKRIPREEMLQMQDIVLNE 165
+ E K L ED R+ ++ L+ +R+ L ++ E+ + ++M+ +L E
Sbjct: 1875 SSLYEKRKILAGQHEDARELKENLDRRERVVLGILANYLSEEQLQDYQHFVKMKSTLLIE 1934
Query: 166 VKKVDSE 172
+K+D +
Sbjct: 1935 QRKLDDK 1941
>gi|93004092 nuclear factor I/B [Homo sapiens]
Length = 420
Score = 29.3 bits (64), Expect = 5.2
Identities = 14/56 (25%), Positives = 29/56 (51%)
Query: 141 KYFGDFEKRIPREEMLQMQDIVLNEVKKVDSEYIATVCGSFRRGAESSGDMDVLLT 196
KYF EKR+ ++E ++D +L+E ++ ++ + + R+ D +LT
Sbjct: 40 KYFKKHEKRMSKDEERAVKDELLSEKPEIKQKWASRLLAKLRKDIRQEYREDFVLT 95
>gi|45439327 periplakin [Homo sapiens]
Length = 1756
Score = 29.3 bits (64), Expect = 5.2
Identities = 36/169 (21%), Positives = 68/169 (40%), Gaps = 24/169 (14%)
Query: 4 RKAPQETLNGGITDMLTELANFEKNVSQAIHKYNAYRKAASVIAKYPHKIKSGAEAKKLP 63
R QET +GG ++ E+ E + +QA + ++ + K EA+ L
Sbjct: 979 RALEQETRDGGQEYVVKEVLRIEPDRAQADEVLQLREELEAL-----RRQKGAREAEVL- 1032
Query: 64 GVGTKIAEKIDEFLATGKLRKLEKIRQDDTSSSINFLTRVSGIGPSAARKFVDEGIKTLE 123
+ ++ LA K R EK+ + + N P ++ + L+
Sbjct: 1033 -----LLQQRVAALAEEKSRAQEKVTEKEVVKLQN--------DPQLEAEY-----QQLQ 1074
Query: 124 DLRKNEDKLNHHQRIGLKYFGDFEKRIPREEMLQMQDIVLNEVKKVDSE 172
+ + +D+L Q L + D KR+ +E + I + EV KV+ +
Sbjct: 1075 EDHQRQDQLREKQEEELSFLQDKLKRLEKERAMAEGKITVKEVLKVEKD 1123
>gi|239755627 PREDICTED: similar to cag [Homo sapiens]
Length = 392
Score = 28.9 bits (63), Expect = 6.8
Identities = 23/94 (24%), Positives = 45/94 (47%), Gaps = 21/94 (22%)
Query: 81 KLRKLEKIRQDDTSSSINFLTRVSGIGPSAARKFVDEGIKTLEDLRKNEDKLNHHQRIGL 140
K++ LEK+ D+ S+ LT G+G + T+ DL+K +DKL L
Sbjct: 71 KVKLLEKL---DSGVSVKHLTEEYGVG-----------MTTIYDLKKQKDKL-------L 109
Query: 141 KYFGDFEKRIPREEMLQMQDIVLNEVKKVDSEYI 174
K++ + +++I + + ++ +V E+I
Sbjct: 110 KFYAESDEQILMKNRKTLHKAKNEDLDRVLKEWI 143
>gi|239750125 PREDICTED: hypothetical protein XP_002347296 [Homo
sapiens]
Length = 392
Score = 28.9 bits (63), Expect = 6.8
Identities = 23/94 (24%), Positives = 45/94 (47%), Gaps = 21/94 (22%)
Query: 81 KLRKLEKIRQDDTSSSINFLTRVSGIGPSAARKFVDEGIKTLEDLRKNEDKLNHHQRIGL 140
K++ LEK+ D+ S+ LT G+G + T+ DL+K +DKL L
Sbjct: 71 KVKLLEKL---DSGVSVKHLTEEYGVG-----------MTTIYDLKKQKDKL-------L 109
Query: 141 KYFGDFEKRIPREEMLQMQDIVLNEVKKVDSEYI 174
K++ + +++I + + ++ +V E+I
Sbjct: 110 KFYAESDEQILMKNRKTLHKAKNEDLDRVLKEWI 143
>gi|239744433 PREDICTED: hypothetical protein XP_002343159 [Homo
sapiens]
Length = 392
Score = 28.9 bits (63), Expect = 6.8
Identities = 23/94 (24%), Positives = 45/94 (47%), Gaps = 21/94 (22%)
Query: 81 KLRKLEKIRQDDTSSSINFLTRVSGIGPSAARKFVDEGIKTLEDLRKNEDKLNHHQRIGL 140
K++ LEK+ D+ S+ LT G+G + T+ DL+K +DKL L
Sbjct: 71 KVKLLEKL---DSGVSVKHLTEEYGVG-----------MTTIYDLKKQKDKL-------L 109
Query: 141 KYFGDFEKRIPREEMLQMQDIVLNEVKKVDSEYI 174
K++ + +++I + + ++ +V E+I
Sbjct: 110 KFYAESDEQILMKNRKTLHKAKNEDLDRVLKEWI 143
>gi|110611903 myosin, heavy polypeptide 4, skeletal muscle [Homo
sapiens]
Length = 1939
Score = 28.9 bits (63), Expect = 6.8
Identities = 29/111 (26%), Positives = 53/111 (47%), Gaps = 11/111 (9%)
Query: 57 AEAKKLPGVGTKIAEKIDEFLATGKLRKLEKIRQDDTSSSINFLTRVSGIGPSAAR---- 112
A+ +KL +++ + ID+ T L K+EK + + N ++G+ + A+
Sbjct: 942 AKKRKLEDECSELKKDIDDLELT--LAKVEKEKHATENKVKNLTEEMAGLDETIAKLTKE 999
Query: 113 -KFVDEGIK-TLEDLRKNEDKLNHHQRIGLK---YFGDFEKRIPREEMLQM 158
K + E + TL+DL+ EDK+N + K D E + +E+ L M
Sbjct: 1000 KKALQEAHQQTLDDLQMEEDKVNTLTKAKTKLEQQVDDLEGSLEQEKKLCM 1050
>gi|100814339 coiled-coil domain containing 146 [Homo sapiens]
Length = 955
Score = 28.9 bits (63), Expect = 6.8
Identities = 33/156 (21%), Positives = 69/156 (44%), Gaps = 29/156 (18%)
Query: 34 HKYNAYRKAASVIAKYPHKIKSGAEAKKLPGVGTKIAEKIDEFLATGKLRKLEKIRQDDT 93
++ N+ ++ +I K KI E +K + + E++ + + KL +++ +R+D
Sbjct: 146 YRLNSLKEEKIIIVKEFEKITKPGEMEKKMKILRESTEELRKEIMQKKL-EIKNLREDLA 204
Query: 94 SSSINFLTRVSGIGPSAARKFVDEGIKTLEDLRKNE----DKLNHHQRIGLKYFGDFEKR 149
S L K LE+L ++ D++ HHQ I ++ + EK
Sbjct: 205 SKQKQLLKEQ----------------KELEELLGHQVVLKDEVAHHQTIPVQIGKEIEKI 248
Query: 150 IPREEMLQMQDIVLNE--------VKKVDSEYIATV 177
++ ++ + IVL + +KKV+++ A V
Sbjct: 249 TRKKVEMEKKKIVLEQEVKTLNDSLKKVENKVSAIV 284
>gi|221316741 N-acetyltransferase 10 isoform b [Homo sapiens]
Length = 953
Score = 28.5 bits (62), Expect = 8.8
Identities = 26/101 (25%), Positives = 48/101 (47%), Gaps = 14/101 (13%)
Query: 95 SSINFLTRVSGIGPSAARKFVDEGI----KTLEDLRKNEDKLNHHQRIGL---------K 141
S I FL ++ + SAA+ + GI K+++ L K E +L Q +GL K
Sbjct: 774 SRIYFLNQLGDLALSAAQSALLLGIGLQHKSVDQLEK-EIELPSGQLMGLFNRIIRKVVK 832
Query: 142 YFGDFEKRIPREEMLQMQDIVLNEVKKVDSEYIATVCGSFR 182
F + +++ E+M+ +D+V+ K S+ + F+
Sbjct: 833 LFNEVQEKAIEEQMVAAKDVVMEPTMKTLSDDLDEAAKEFQ 873
>gi|221316723 N-acetyltransferase 10 isoform a [Homo sapiens]
Length = 1025
Score = 28.5 bits (62), Expect = 8.8
Identities = 26/101 (25%), Positives = 48/101 (47%), Gaps = 14/101 (13%)
Query: 95 SSINFLTRVSGIGPSAARKFVDEGI----KTLEDLRKNEDKLNHHQRIGL---------K 141
S I FL ++ + SAA+ + GI K+++ L K E +L Q +GL K
Sbjct: 846 SRIYFLNQLGDLALSAAQSALLLGIGLQHKSVDQLEK-EIELPSGQLMGLFNRIIRKVVK 904
Query: 142 YFGDFEKRIPREEMLQMQDIVLNEVKKVDSEYIATVCGSFR 182
F + +++ E+M+ +D+V+ K S+ + F+
Sbjct: 905 LFNEVQEKAIEEQMVAAKDVVMEPTMKTLSDDLDEAAKEFQ 945
>gi|56549649 nuclear factor I/X (CCAAT-binding transcription factor)
[Homo sapiens]
Length = 441
Score = 28.5 bits (62), Expect = 8.8
Identities = 14/56 (25%), Positives = 28/56 (50%)
Query: 141 KYFGDFEKRIPREEMLQMQDIVLNEVKKVDSEYIATVCGSFRRGAESSGDMDVLLT 196
KYF EKR+ ++E ++D +L E ++ ++ + + R+ D +LT
Sbjct: 39 KYFKKHEKRMSKDEERAVKDELLGEKPEIKQKWASRLLAKLRKDIRPEFREDFVLT 94
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.134 0.382
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,147,163
Number of Sequences: 37866
Number of extensions: 528260
Number of successful extensions: 1437
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 1407
Number of HSP's gapped (non-prelim): 47
length of query: 335
length of database: 18,247,518
effective HSP length: 103
effective length of query: 232
effective length of database: 14,347,320
effective search space: 3328578240
effective search space used: 3328578240
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.