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Search of human proteins with 39995084
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|39995084 integrator complex subunit 3 [Homo sapiens]
(1042 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|39995084 integrator complex subunit 3 [Homo sapiens] 2075 0.0
gi|122937319 even-skipped homeobox 2 [Homo sapiens] 42 0.004
gi|239757130 PREDICTED: hypothetical protein FLJ22184 [Homo sapi... 40 0.011
gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo sapi... 40 0.011
gi|239746149 PREDICTED: hypothetical protein LOC80164 [Homo sapi... 40 0.011
gi|110347449 POU domain, class 4, transcription factor 1 [Homo s... 40 0.015
gi|27881501 ATP-binding cassette, sub-family A, member 12 isofor... 39 0.020
gi|30795238 ATP-binding cassette, sub-family A, member 12 isofor... 39 0.020
gi|154091020 leucine-rich repeats and calponin homology (CH) dom... 39 0.020
gi|73427806 v-maf musculoaponeurotic fibrosarcoma oncogene homol... 39 0.026
gi|5453736 v-maf musculoaponeurotic fibrosarcoma oncogene homolo... 39 0.026
gi|13994190 frizzled 8 [Homo sapiens] 39 0.026
gi|7706435 headcase [Homo sapiens] 38 0.044
gi|45439359 triple functional domain (PTPRF interacting) [Homo s... 38 0.044
gi|124107614 PR domain containing 13 [Homo sapiens] 38 0.044
gi|146229340 mutated in colorectal cancers isoform 1 [Homo sapiens] 38 0.057
gi|110347455 Brn3b POU domain transcription factor [Homo sapiens] 38 0.057
gi|33620755 YEATS domain containing 2 [Homo sapiens] 38 0.057
gi|5453936 POU class 3 homeobox 3 [Homo sapiens] 38 0.057
gi|40068464 AT rich interactive domain 1B (SWI1-like) isoform 2 ... 38 0.057
gi|40068466 AT rich interactive domain 1B (SWI1-like) isoform 1 ... 38 0.057
gi|40068462 AT rich interactive domain 1B (SWI1-like) isoform 3 ... 38 0.057
gi|224591404 cancer/testis antigen family 147, member B1 [Homo s... 37 0.074
gi|116284398 WAS/WASL interacting protein family, member 1 [Homo... 37 0.074
gi|38373695 WAS/WASL interacting protein family, member 1 [Homo ... 37 0.074
gi|219555718 synaptonemal complex central element protein 1 isof... 37 0.074
gi|224586823 coiled-coil domain containing 110 isoform b [Homo s... 37 0.097
gi|22749515 coiled-coil domain containing 110 isoform a [Homo sa... 37 0.097
gi|4502565 calpain, small subunit 1 [Homo sapiens] 37 0.13
gi|51599151 calpain, small subunit 1 [Homo sapiens] 37 0.13
>gi|39995084 integrator complex subunit 3 [Homo sapiens]
Length = 1042
Score = 2075 bits (5377), Expect = 0.0
Identities = 1042/1042 (100%), Positives = 1042/1042 (100%)
Query: 1 MELQKGKGAAAAAAASGAAGGGGGGAGAGAPGGGRLLLSTSLDAKDELEERLERCMSIVT 60
MELQKGKGAAAAAAASGAAGGGGGGAGAGAPGGGRLLLSTSLDAKDELEERLERCMSIVT
Sbjct: 1 MELQKGKGAAAAAAASGAAGGGGGGAGAGAPGGGRLLLSTSLDAKDELEERLERCMSIVT 60
Query: 61 SMTAGVSEREANDALNAYVCKGLPQHEEICLGLFTLILTEPAQAQKCYRDLALVSRDGMN 120
SMTAGVSEREANDALNAYVCKGLPQHEEICLGLFTLILTEPAQAQKCYRDLALVSRDGMN
Sbjct: 61 SMTAGVSEREANDALNAYVCKGLPQHEEICLGLFTLILTEPAQAQKCYRDLALVSRDGMN 120
Query: 121 IVLNKINQILMEKYLKLQDTCRTQLVWLVRELVKSGVLGADGVCMTFMKQIAGGDVTAKN 180
IVLNKINQILMEKYLKLQDTCRTQLVWLVRELVKSGVLGADGVCMTFMKQIAGGDVTAKN
Sbjct: 121 IVLNKINQILMEKYLKLQDTCRTQLVWLVRELVKSGVLGADGVCMTFMKQIAGGDVTAKN 180
Query: 181 IWLAESVLDILTEQREWVLKSSILIAMAVYTYLRLIVDHHGTAQLQALRQKEVDFCISLL 240
IWLAESVLDILTEQREWVLKSSILIAMAVYTYLRLIVDHHGTAQLQALRQKEVDFCISLL
Sbjct: 181 IWLAESVLDILTEQREWVLKSSILIAMAVYTYLRLIVDHHGTAQLQALRQKEVDFCISLL 240
Query: 241 RERFMECLMIGRDLVRLLQNVARIPEFELLWKDIIHNPQALSPQFTGILQLLQSRTSRKF 300
RERFMECLMIGRDLVRLLQNVARIPEFELLWKDIIHNPQALSPQFTGILQLLQSRTSRKF
Sbjct: 241 RERFMECLMIGRDLVRLLQNVARIPEFELLWKDIIHNPQALSPQFTGILQLLQSRTSRKF 300
Query: 301 LACRLTPDMETKLLFMTSRVRFGQQKRYQDWFQRQYLSTPDSQSLRCDLIRYICGVVHPS 360
LACRLTPDMETKLLFMTSRVRFGQQKRYQDWFQRQYLSTPDSQSLRCDLIRYICGVVHPS
Sbjct: 301 LACRLTPDMETKLLFMTSRVRFGQQKRYQDWFQRQYLSTPDSQSLRCDLIRYICGVVHPS 360
Query: 361 NEVLSSDILPRWAIIGWLLTTCTSNVAASNAKLALFYDWLFFSPDKDSIMNIEPAILVMH 420
NEVLSSDILPRWAIIGWLLTTCTSNVAASNAKLALFYDWLFFSPDKDSIMNIEPAILVMH
Sbjct: 361 NEVLSSDILPRWAIIGWLLTTCTSNVAASNAKLALFYDWLFFSPDKDSIMNIEPAILVMH 420
Query: 421 HSMKPHPAITATLLDFMCRIIPNFYPPLEGHVRQGVFSSLNHIVEKRVLAHLAPLFDNPK 480
HSMKPHPAITATLLDFMCRIIPNFYPPLEGHVRQGVFSSLNHIVEKRVLAHLAPLFDNPK
Sbjct: 421 HSMKPHPAITATLLDFMCRIIPNFYPPLEGHVRQGVFSSLNHIVEKRVLAHLAPLFDNPK 480
Query: 481 LDKELRAMLREKFPEFCSSPSPPVEVKIEEPVSMEMDNHMSDKDESCYDNAEAAFSDDEE 540
LDKELRAMLREKFPEFCSSPSPPVEVKIEEPVSMEMDNHMSDKDESCYDNAEAAFSDDEE
Sbjct: 481 LDKELRAMLREKFPEFCSSPSPPVEVKIEEPVSMEMDNHMSDKDESCYDNAEAAFSDDEE 540
Query: 541 DLNSKGKKREFRFHPIKETVVEEPVDITPYLDQLDESLRDKVLQLQKGSDTEAQCEVMQE 600
DLNSKGKKREFRFHPIKETVVEEPVDITPYLDQLDESLRDKVLQLQKGSDTEAQCEVMQE
Sbjct: 541 DLNSKGKKREFRFHPIKETVVEEPVDITPYLDQLDESLRDKVLQLQKGSDTEAQCEVMQE 600
Query: 601 IVDQVLEEDFDSEQLSVLASCLQELFKAHFRGEVLPEEITEESLEESVGKPLYLIFRNLC 660
IVDQVLEEDFDSEQLSVLASCLQELFKAHFRGEVLPEEITEESLEESVGKPLYLIFRNLC
Sbjct: 601 IVDQVLEEDFDSEQLSVLASCLQELFKAHFRGEVLPEEITEESLEESVGKPLYLIFRNLC 660
Query: 661 QMQEDNSSFSLLLDLLSELYQKQPKIGYHLLYYLRASKAAAGKMNLYESFAQATQLGDLH 720
QMQEDNSSFSLLLDLLSELYQKQPKIGYHLLYYLRASKAAAGKMNLYESFAQATQLGDLH
Sbjct: 661 QMQEDNSSFSLLLDLLSELYQKQPKIGYHLLYYLRASKAAAGKMNLYESFAQATQLGDLH 720
Query: 721 TCLMMDMKACQEDDVRLLCHLTPSIYTEFPDETLRSGELLNMIVAVIDSAQLQELVCHVM 780
TCLMMDMKACQEDDVRLLCHLTPSIYTEFPDETLRSGELLNMIVAVIDSAQLQELVCHVM
Sbjct: 721 TCLMMDMKACQEDDVRLLCHLTPSIYTEFPDETLRSGELLNMIVAVIDSAQLQELVCHVM 780
Query: 781 MGNLVMFRKDSVLNILIQSLDWETFEQYCAWQLFLAHNIPLETIIPILQHLKYKEHPEAL 840
MGNLVMFRKDSVLNILIQSLDWETFEQYCAWQLFLAHNIPLETIIPILQHLKYKEHPEAL
Sbjct: 781 MGNLVMFRKDSVLNILIQSLDWETFEQYCAWQLFLAHNIPLETIIPILQHLKYKEHPEAL 840
Query: 841 SCLLLQLRREKPSEEMVKMVLSRPCHPDDQFTTSILRHWCMKHDELLAEHIKSLLIKNNS 900
SCLLLQLRREKPSEEMVKMVLSRPCHPDDQFTTSILRHWCMKHDELLAEHIKSLLIKNNS
Sbjct: 841 SCLLLQLRREKPSEEMVKMVLSRPCHPDDQFTTSILRHWCMKHDELLAEHIKSLLIKNNS 900
Query: 901 LPRKRQSLRSSSSKLAQLTLEQILEHLDNLRLNLTNTKQNFFSQTPILQALQHVQASCDE 960
LPRKRQSLRSSSSKLAQLTLEQILEHLDNLRLNLTNTKQNFFSQTPILQALQHVQASCDE
Sbjct: 901 LPRKRQSLRSSSSKLAQLTLEQILEHLDNLRLNLTNTKQNFFSQTPILQALQHVQASCDE 960
Query: 961 AHKMKFSDLFSLAEEYEDSSTKPPKSRRKAALSSPRSRKNATQPPNAEEESGSSSASEEE 1020
AHKMKFSDLFSLAEEYEDSSTKPPKSRRKAALSSPRSRKNATQPPNAEEESGSSSASEEE
Sbjct: 961 AHKMKFSDLFSLAEEYEDSSTKPPKSRRKAALSSPRSRKNATQPPNAEEESGSSSASEEE 1020
Query: 1021 DTKPKPTKRKRKGSSAVGSDSD 1042
DTKPKPTKRKRKGSSAVGSDSD
Sbjct: 1021 DTKPKPTKRKRKGSSAVGSDSD 1042
>gi|122937319 even-skipped homeobox 2 [Homo sapiens]
Length = 476
Score = 41.6 bits (96), Expect = 0.004
Identities = 19/26 (73%), Positives = 20/26 (76%)
Query: 9 AAAAAAASGAAGGGGGGAGAGAPGGG 34
AAAAAAA G+ GGGGGG G G GGG
Sbjct: 402 AAAAAAALGSRGGGGGGGGGGGGGGG 427
Score = 38.1 bits (87), Expect = 0.044
Identities = 20/39 (51%), Positives = 23/39 (58%), Gaps = 5/39 (12%)
Query: 1 MELQKGKGAAAAAAASGAA-----GGGGGGAGAGAPGGG 34
+ + AAAAAAA+ AA GGGGGG G G GGG
Sbjct: 390 LSCHSSQSAAAAAAAAAAALGSRGGGGGGGGGGGGGGGG 428
>gi|239757130 PREDICTED: hypothetical protein FLJ22184 [Homo
sapiens]
Length = 855
Score = 40.0 bits (92), Expect = 0.011
Identities = 24/57 (42%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 9 AAAAAAASGAAGGGGGGAGAGAPGGGRLLLS-TSLDAKDELEERLERCMSIVTSMTA 64
AAA AA G+ GG GG G G GG R LS L EL L+ + +TS+T+
Sbjct: 777 AAAEGAAGGSGGGPGGAEGGGVTGGARAALSDAELGRWAELLSPLDESRASITSVTS 833
>gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo sapiens]
Length = 1124
Score = 40.0 bits (92), Expect = 0.011
Identities = 24/57 (42%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 9 AAAAAAASGAAGGGGGGAGAGAPGGGRLLLS-TSLDAKDELEERLERCMSIVTSMTA 64
AAA AA G+ GG GG G G GG R LS L EL L+ + +TS+T+
Sbjct: 1046 AAAEGAAGGSGGGPGGAEGGGVTGGARAALSDAELGRWAELLSPLDESRASITSVTS 1102
>gi|239746149 PREDICTED: hypothetical protein LOC80164 [Homo
sapiens]
Length = 816
Score = 40.0 bits (92), Expect = 0.011
Identities = 24/57 (42%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 9 AAAAAAASGAAGGGGGGAGAGAPGGGRLLLS-TSLDAKDELEERLERCMSIVTSMTA 64
AAA AA G+ GG GG G G GG R LS L EL L+ + +TS+T+
Sbjct: 738 AAAEGAAGGSGGGPGGAEGGGVTGGARAALSDAELGRWAELLSPLDESRASITSVTS 794
>gi|110347449 POU domain, class 4, transcription factor 1 [Homo
sapiens]
Length = 419
Score = 39.7 bits (91), Expect = 0.015
Identities = 20/38 (52%), Positives = 21/38 (55%), Gaps = 4/38 (10%)
Query: 1 MELQKGKGAAAAAAASGAA----GGGGGGAGAGAPGGG 34
+ L G G A AAA G A GGGGG G G PGGG
Sbjct: 125 LALMAGAGGAGAAAGGGGAHDGPGGGGGPGGGGGPGGG 162
Score = 35.4 bits (80), Expect = 0.28
Identities = 14/29 (48%), Positives = 14/29 (48%)
Query: 6 GKGAAAAAAASGAAGGGGGGAGAGAPGGG 34
G G G GGG GG G G PGGG
Sbjct: 146 GPGGGGGPGGGGGPGGGPGGGGGGGPGGG 174
Score = 34.3 bits (77), Expect = 0.63
Identities = 14/29 (48%), Positives = 14/29 (48%)
Query: 8 GAAAAAAASGAAGGGGGGAGAGAPGGGRL 36
G G GGGG G G G PGGG L
Sbjct: 155 GGGGPGGGPGGGGGGGPGGGGGGPGGGLL 183
Score = 31.6 bits (70), Expect = 4.1
Identities = 13/28 (46%), Positives = 13/28 (46%)
Query: 6 GKGAAAAAAASGAAGGGGGGAGAGAPGG 33
G G G GGGGGG G G GG
Sbjct: 158 GPGGGPGGGGGGGPGGGGGGPGGGLLGG 185
Score = 31.2 bits (69), Expect = 5.3
Identities = 13/29 (44%), Positives = 13/29 (44%)
Query: 6 GKGAAAAAAASGAAGGGGGGAGAGAPGGG 34
G G G GGGGG G G GGG
Sbjct: 149 GGGGPGGGGGPGGGPGGGGGGGPGGGGGG 177
>gi|27881501 ATP-binding cassette, sub-family A, member 12 isoform b
[Homo sapiens]
Length = 2277
Score = 39.3 bits (90), Expect = 0.020
Identities = 38/150 (25%), Positives = 62/150 (41%), Gaps = 13/150 (8%)
Query: 837 PEALSCLLLQLRR--EKPSEEMVKMVLSRPCHPDDQFTTSILRH-----WCMKHDELLAE 889
PE L L QLR E E ++ + C D S+ ++ EL E
Sbjct: 105 PEVLKSKLSQLRNLTELLCESETFSLIEKSCQLSDMSFGSLCEESEFDLQLLEAAELGTE 164
Query: 890 HIKSLLIKNNSLPRKRQSLRSSSSKLAQLTLEQILEHLDNLRLNLTNTKQNFFSQTPILQ 949
SLL +N + +K + L + L ++Q LE + N +N PI++
Sbjct: 165 IAASLLYHDNVISKKVRDLLTGDPSKINLNMDQFLEQALQM-----NYLENITQLIPIIE 219
Query: 950 ALQHVQASCDEAHKM-KFSDLFSLAEEYED 978
A+ HV S D + K + ++F EE ++
Sbjct: 220 AMLHVNNSADASEKPGQLLEMFKNVEELKE 249
>gi|30795238 ATP-binding cassette, sub-family A, member 12 isoform a
[Homo sapiens]
Length = 2595
Score = 39.3 bits (90), Expect = 0.020
Identities = 38/150 (25%), Positives = 62/150 (41%), Gaps = 13/150 (8%)
Query: 837 PEALSCLLLQLRR--EKPSEEMVKMVLSRPCHPDDQFTTSILRH-----WCMKHDELLAE 889
PE L L QLR E E ++ + C D S+ ++ EL E
Sbjct: 423 PEVLKSKLSQLRNLTELLCESETFSLIEKSCQLSDMSFGSLCEESEFDLQLLEAAELGTE 482
Query: 890 HIKSLLIKNNSLPRKRQSLRSSSSKLAQLTLEQILEHLDNLRLNLTNTKQNFFSQTPILQ 949
SLL +N + +K + L + L ++Q LE + N +N PI++
Sbjct: 483 IAASLLYHDNVISKKVRDLLTGDPSKINLNMDQFLEQALQM-----NYLENITQLIPIIE 537
Query: 950 ALQHVQASCDEAHKM-KFSDLFSLAEEYED 978
A+ HV S D + K + ++F EE ++
Sbjct: 538 AMLHVNNSADASEKPGQLLEMFKNVEELKE 567
>gi|154091020 leucine-rich repeats and calponin homology (CH)
domain containing 2 [Homo sapiens]
Length = 765
Score = 39.3 bits (90), Expect = 0.020
Identities = 17/33 (51%), Positives = 20/33 (60%)
Query: 6 GKGAAAAAAASGAAGGGGGGAGAGAPGGGRLLL 38
G G ++ G AGGGGGGAG G GGG L+
Sbjct: 15 GCGGGGSSGGCGTAGGGGGGAGGGGGGGGGTLV 47
Score = 32.7 bits (73), Expect = 1.8
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 8 GAAAAAAASGAAGGGGGGAGAGAPGGGRLLL 38
G ++ A GGGGG G G GGG L++
Sbjct: 18 GGGSSGGCGTAGGGGGGAGGGGGGGGGTLVV 48
Score = 32.3 bits (72), Expect = 2.4
Identities = 13/29 (44%), Positives = 15/29 (51%)
Query: 6 GKGAAAAAAASGAAGGGGGGAGAGAPGGG 34
G G ++ G GGGG GAG GGG
Sbjct: 13 GGGCGGGGSSGGCGTAGGGGGGAGGGGGG 41
>gi|73427806 v-maf musculoaponeurotic fibrosarcoma oncogene homolog
isoform b [Homo sapiens]
Length = 373
Score = 38.9 bits (89), Expect = 0.026
Identities = 17/32 (53%), Positives = 18/32 (56%)
Query: 6 GKGAAAAAAASGAAGGGGGGAGAGAPGGGRLL 37
G G A+A G GGGGGG G GA G G L
Sbjct: 215 GAGGGGPASAGGGGGGGGGGGGGGAAGAGGAL 246
Score = 36.2 bits (82), Expect = 0.17
Identities = 18/33 (54%), Positives = 19/33 (57%), Gaps = 4/33 (12%)
Query: 6 GKGAAAAAAASGAAGGG----GGGAGAGAPGGG 34
G AA+A A GA GGG GGG G G GGG
Sbjct: 204 GSAAASAGGAGGAGGGGPASAGGGGGGGGGGGG 236
Score = 35.8 bits (81), Expect = 0.22
Identities = 18/30 (60%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Query: 6 GKGAAAAAAASGAAGGGGGG-AGAGAPGGG 34
G +AAA+A GA G GGGG A AG GGG
Sbjct: 201 GAAGSAAASAGGAGGAGGGGPASAGGGGGG 230
Score = 33.5 bits (75), Expect = 1.1
Identities = 16/30 (53%), Positives = 19/30 (63%), Gaps = 3/30 (10%)
Query: 8 GAAAAAAASGAAGGGGGGAGAGAP---GGG 34
GA AA ++ A+ GG GGAG G P GGG
Sbjct: 198 GAPGAAGSAAASAGGAGGAGGGGPASAGGG 227
Score = 30.8 bits (68), Expect = 7.0
Identities = 14/29 (48%), Positives = 16/29 (55%)
Query: 6 GKGAAAAAAASGAAGGGGGGAGAGAPGGG 34
G AA +AA+ A G GG G G A GG
Sbjct: 198 GAPGAAGSAAASAGGAGGAGGGGPASAGG 226
Score = 30.8 bits (68), Expect = 7.0
Identities = 12/28 (42%), Positives = 14/28 (50%)
Query: 6 GKGAAAAAAASGAAGGGGGGAGAGAPGG 33
G A++G GGGGGG G G G
Sbjct: 214 GGAGGGGPASAGGGGGGGGGGGGGGAAG 241
>gi|5453736 v-maf musculoaponeurotic fibrosarcoma oncogene homolog
isoform a [Homo sapiens]
Length = 403
Score = 38.9 bits (89), Expect = 0.026
Identities = 17/32 (53%), Positives = 18/32 (56%)
Query: 6 GKGAAAAAAASGAAGGGGGGAGAGAPGGGRLL 37
G G A+A G GGGGGG G GA G G L
Sbjct: 215 GAGGGGPASAGGGGGGGGGGGGGGAAGAGGAL 246
Score = 36.2 bits (82), Expect = 0.17
Identities = 18/33 (54%), Positives = 19/33 (57%), Gaps = 4/33 (12%)
Query: 6 GKGAAAAAAASGAAGGG----GGGAGAGAPGGG 34
G AA+A A GA GGG GGG G G GGG
Sbjct: 204 GSAAASAGGAGGAGGGGPASAGGGGGGGGGGGG 236
Score = 35.8 bits (81), Expect = 0.22
Identities = 18/30 (60%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Query: 6 GKGAAAAAAASGAAGGGGGG-AGAGAPGGG 34
G +AAA+A GA G GGGG A AG GGG
Sbjct: 201 GAAGSAAASAGGAGGAGGGGPASAGGGGGG 230
Score = 33.5 bits (75), Expect = 1.1
Identities = 16/30 (53%), Positives = 19/30 (63%), Gaps = 3/30 (10%)
Query: 8 GAAAAAAASGAAGGGGGGAGAGAP---GGG 34
GA AA ++ A+ GG GGAG G P GGG
Sbjct: 198 GAPGAAGSAAASAGGAGGAGGGGPASAGGG 227
Score = 30.8 bits (68), Expect = 7.0
Identities = 14/29 (48%), Positives = 16/29 (55%)
Query: 6 GKGAAAAAAASGAAGGGGGGAGAGAPGGG 34
G AA +AA+ A G GG G G A GG
Sbjct: 198 GAPGAAGSAAASAGGAGGAGGGGPASAGG 226
Score = 30.8 bits (68), Expect = 7.0
Identities = 12/28 (42%), Positives = 14/28 (50%)
Query: 6 GKGAAAAAAASGAAGGGGGGAGAGAPGG 33
G A++G GGGGGG G G G
Sbjct: 214 GGAGGGGPASAGGGGGGGGGGGGGGAAG 241
>gi|13994190 frizzled 8 [Homo sapiens]
Length = 694
Score = 38.9 bits (89), Expect = 0.026
Identities = 18/30 (60%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Query: 6 GKGAAAAAAASGAAGGGGGG-AGAGAPGGG 34
G GA AA G GGGGGG G G PGGG
Sbjct: 632 GAGATAAGGGGGPGGGGGGGPGGGGGPGGG 661
Score = 35.4 bits (80), Expect = 0.28
Identities = 17/31 (54%), Positives = 17/31 (54%), Gaps = 3/31 (9%)
Query: 7 KGAAAAAAASGAAGGGGG---GAGAGAPGGG 34
KGAA A A GGGG G G G PGGG
Sbjct: 625 KGAAVGGGAGATAAGGGGGPGGGGGGGPGGG 655
Score = 34.3 bits (77), Expect = 0.63
Identities = 17/27 (62%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Query: 8 GAAAAAAASGAAGGGGG-GAGAGAPGG 33
GA A A GAA G G GAGAG PGG
Sbjct: 346 GAGGAGGAGGAAAGAGAAGAGAGGPGG 372
Score = 33.1 bits (74), Expect = 1.4
Identities = 15/29 (51%), Positives = 17/29 (58%)
Query: 6 GKGAAAAAAASGAAGGGGGGAGAGAPGGG 34
G+G AA+ A GGGGG A PGGG
Sbjct: 196 GRGGGGGDAAAPPARGGGGGGKARPPGGG 224
Score = 32.0 bits (71), Expect = 3.1
Identities = 14/26 (53%), Positives = 15/26 (57%)
Query: 9 AAAAAAASGAAGGGGGGAGAGAPGGG 34
+ A A GA G GG AGAGA G G
Sbjct: 341 SGGAPGAGGAGGAGGAAAGAGAAGAG 366
Score = 30.4 bits (67), Expect = 9.1
Identities = 13/27 (48%), Positives = 14/27 (51%)
Query: 8 GAAAAAAASGAAGGGGGGAGAGAPGGG 34
G A A +G AGG GAGA G G
Sbjct: 342 GGAPGAGGAGGAGGAAAGAGAAGAGAG 368
>gi|7706435 headcase [Homo sapiens]
Length = 543
Score = 38.1 bits (87), Expect = 0.044
Identities = 21/40 (52%), Positives = 23/40 (57%), Gaps = 7/40 (17%)
Query: 2 ELQKGKGAAAAAAASGAAGGGG-------GGAGAGAPGGG 34
E + G GA AAA A+GAA GG G A AGAPG G
Sbjct: 22 EQENGAGALAAAGAAGAAAGGALAAAAGCGAAAAGAPGAG 61
Score = 32.3 bits (72), Expect = 2.4
Identities = 16/27 (59%), Positives = 16/27 (59%)
Query: 8 GAAAAAAASGAAGGGGGGAGAGAPGGG 34
GA AAAA GAA G GAG A GG
Sbjct: 42 GALAAAAGCGAAAAGAPGAGGAAGAGG 68
Score = 31.6 bits (70), Expect = 4.1
Identities = 19/42 (45%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 6 GKGAAAAAAASGAAGGGGGGAGAGAPGGGRLLLSTSLDAKDE 47
G AA A A GAAG GG G GA A + + DAK+E
Sbjct: 51 GAAAAGAPGAGGAAGAGGAGTGA-ANAAAAAGAAAAGDAKNE 91
>gi|45439359 triple functional domain (PTPRF interacting) [Homo
sapiens]
Length = 3097
Score = 38.1 bits (87), Expect = 0.044
Identities = 15/34 (44%), Positives = 18/34 (52%)
Query: 1 MELQKGKGAAAAAAASGAAGGGGGGAGAGAPGGG 34
+E Q+ SG +GGGGG G GAP GG
Sbjct: 2284 IEYQRNHSGGGGGGGSGGSGGGGGSGGGGAPSGG 2317
>gi|124107614 PR domain containing 13 [Homo sapiens]
Length = 707
Score = 38.1 bits (87), Expect = 0.044
Identities = 19/36 (52%), Positives = 20/36 (55%)
Query: 3 LQKGKGAAAAAAASGAAGGGGGGAGAGAPGGGRLLL 38
L G A AAA G GGG GG+GAG P G L L
Sbjct: 541 LDSGTLPPAVAAAGGTGGGGSGGSGAGKPKTGHLCL 576
>gi|146229340 mutated in colorectal cancers isoform 1 [Homo
sapiens]
Length = 1019
Score = 37.7 bits (86), Expect = 0.057
Identities = 29/81 (35%), Positives = 39/81 (48%), Gaps = 10/81 (12%)
Query: 9 AAAAAAASGAAGGGGGGAGAGAPGGGRLLLSTSLDAKDELEERLERCMSIVTSMTAGVSE 68
AAAAAAA+G++ GGGG G+G+ S+S + EER+ R G
Sbjct: 3 AAAAAAAAGSSSSGGGGGGSGSSS------SSSDTSSTGEEERMRRLFQTCDGDGDGYIS 56
Query: 69 REANDALNAYVCKGLPQHEEI 89
R ND L VC+ L E +
Sbjct: 57 R--NDLL--MVCRQLNMEESV 73
>gi|110347455 Brn3b POU domain transcription factor [Homo sapiens]
Length = 409
Score = 37.7 bits (86), Expect = 0.057
Identities = 17/33 (51%), Positives = 23/33 (69%)
Query: 9 AAAAAAASGAAGGGGGGAGAGAPGGGRLLLSTS 41
+A++ ++S AGGGGGG G G GGGR S+S
Sbjct: 43 SASSPSSSSNAGGGGGGGGGGGGGGGRSSSSSS 75
Score = 30.4 bits (67), Expect = 9.1
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 9 AAAAAAASGAAGGGGGGAGAGAPGGG 34
A +A++ S ++ GGGG G G GGG
Sbjct: 41 APSASSPSSSSNAGGGGGGGGGGGGG 66
>gi|33620755 YEATS domain containing 2 [Homo sapiens]
Length = 1422
Score = 37.7 bits (86), Expect = 0.057
Identities = 17/32 (53%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
Query: 3 LQKGKGAAAAAAASGAAGGGGGGAGAGAPGGG 34
LQ G AA+ + +G GGGGGG G+G+ GGG
Sbjct: 791 LQSGS-AASGGSGAGGGGGGGGGGGSGSGGGG 821
Score = 32.3 bits (72), Expect = 2.4
Identities = 13/29 (44%), Positives = 14/29 (48%)
Query: 6 GKGAAAAAAASGAAGGGGGGAGAGAPGGG 34
G G SG+ GGG G G G GGG
Sbjct: 805 GGGGGGGGGGSGSGGGGSTGGGGGTAGGG 833
Score = 30.4 bits (67), Expect = 9.1
Identities = 12/29 (41%), Positives = 13/29 (44%)
Query: 6 GKGAAAAAAASGAAGGGGGGAGAGAPGGG 34
G GA G G G GG G+ GGG
Sbjct: 800 GSGAGGGGGGGGGGGSGSGGGGSTGGGGG 828
>gi|5453936 POU class 3 homeobox 3 [Homo sapiens]
Length = 500
Score = 37.7 bits (86), Expect = 0.057
Identities = 16/25 (64%), Positives = 16/25 (64%)
Query: 10 AAAAAASGAAGGGGGGAGAGAPGGG 34
AA A G GGGGGG GAG GGG
Sbjct: 26 AAGAGGGGGGGGGGGGGGAGGGGGG 50
Score = 35.8 bits (81), Expect = 0.22
Identities = 16/32 (50%), Positives = 18/32 (56%)
Query: 3 LQKGKGAAAAAAASGAAGGGGGGAGAGAPGGG 34
L G + AA +G GGGGGG G G GGG
Sbjct: 16 LAAGSIVHSDAAGAGGGGGGGGGGGGGGAGGG 47
>gi|40068464 AT rich interactive domain 1B (SWI1-like) isoform 2
[Homo sapiens]
Length = 2191
Score = 37.7 bits (86), Expect = 0.057
Identities = 20/34 (58%), Positives = 23/34 (67%)
Query: 6 GKGAAAAAAASGAAGGGGGGAGAGAPGGGRLLLS 39
G AAAAAAA+ AAGGGGGG G+ G +L S
Sbjct: 279 GAVAAAAAAAAAAAGGGGGGGYGGSSAGYGVLSS 312
Score = 37.4 bits (85), Expect = 0.074
Identities = 21/36 (58%), Positives = 24/36 (66%), Gaps = 1/36 (2%)
Query: 6 GKGA-AAAAAASGAAGGGGGGAGAGAPGGGRLLLST 40
G GA AAAAAA+ AA GGGGG G G G +LS+
Sbjct: 277 GAGAVAAAAAAAAAAAGGGGGGGYGGSSAGYGVLSS 312
Score = 36.6 bits (83), Expect = 0.13
Identities = 15/29 (51%), Positives = 16/29 (55%)
Query: 6 GKGAAAAAAASGAAGGGGGGAGAGAPGGG 34
G G G +GGGGGG GAGA G G
Sbjct: 249 GGGGGGGGGGGGGSGGGGGGGGAGAGGAG 277
Score = 34.7 bits (78), Expect = 0.48
Identities = 14/27 (51%), Positives = 16/27 (59%)
Query: 8 GAAAAAAASGAAGGGGGGAGAGAPGGG 34
G + A G GGGGGG G+G GGG
Sbjct: 242 GYSRPGAGGGGGGGGGGGGGSGGGGGG 268
Score = 34.7 bits (78), Expect = 0.48
Identities = 15/39 (38%), Positives = 18/39 (46%)
Query: 6 GKGAAAAAAASGAAGGGGGGAGAGAPGGGRLLLSTSLDA 44
G G GGGGGGAGAG G G + + + A
Sbjct: 251 GGGGGGGGGGGSGGGGGGGGAGAGGAGAGAVAAAAAAAA 289
Score = 34.3 bits (77), Expect = 0.63
Identities = 14/29 (48%), Positives = 15/29 (51%)
Query: 6 GKGAAAAAAASGAAGGGGGGAGAGAPGGG 34
G A G GGGGGG+G G GGG
Sbjct: 242 GYSRPGAGGGGGGGGGGGGGSGGGGGGGG 270
Score = 32.7 bits (73), Expect = 1.8
Identities = 13/29 (44%), Positives = 13/29 (44%)
Query: 6 GKGAAAAAAASGAAGGGGGGAGAGAPGGG 34
G G G G GGGG G GA GG
Sbjct: 247 GAGGGGGGGGGGGGGSGGGGGGGGAGAGG 275
Score = 32.7 bits (73), Expect = 1.8
Identities = 15/28 (53%), Positives = 16/28 (57%)
Query: 6 GKGAAAAAAASGAAGGGGGGAGAGAPGG 33
G GA A AAA+ AA GG G G GG
Sbjct: 275 GAGAGAVAAAAAAAAAAAGGGGGGGYGG 302
>gi|40068466 AT rich interactive domain 1B (SWI1-like) isoform 1
[Homo sapiens]
Length = 2231
Score = 37.7 bits (86), Expect = 0.057
Identities = 20/34 (58%), Positives = 23/34 (67%)
Query: 6 GKGAAAAAAASGAAGGGGGGAGAGAPGGGRLLLS 39
G AAAAAAA+ AAGGGGGG G+ G +L S
Sbjct: 279 GAVAAAAAAAAAAAGGGGGGGYGGSSAGYGVLSS 312
Score = 37.4 bits (85), Expect = 0.074
Identities = 21/36 (58%), Positives = 24/36 (66%), Gaps = 1/36 (2%)
Query: 6 GKGA-AAAAAASGAAGGGGGGAGAGAPGGGRLLLST 40
G GA AAAAAA+ AA GGGGG G G G +LS+
Sbjct: 277 GAGAVAAAAAAAAAAAGGGGGGGYGGSSAGYGVLSS 312
Score = 36.6 bits (83), Expect = 0.13
Identities = 15/29 (51%), Positives = 16/29 (55%)
Query: 6 GKGAAAAAAASGAAGGGGGGAGAGAPGGG 34
G G G +GGGGGG GAGA G G
Sbjct: 249 GGGGGGGGGGGGGSGGGGGGGGAGAGGAG 277
Score = 34.7 bits (78), Expect = 0.48
Identities = 14/27 (51%), Positives = 16/27 (59%)
Query: 8 GAAAAAAASGAAGGGGGGAGAGAPGGG 34
G + A G GGGGGG G+G GGG
Sbjct: 242 GYSRPGAGGGGGGGGGGGGGSGGGGGG 268
Score = 34.7 bits (78), Expect = 0.48
Identities = 15/39 (38%), Positives = 18/39 (46%)
Query: 6 GKGAAAAAAASGAAGGGGGGAGAGAPGGGRLLLSTSLDA 44
G G GGGGGGAGAG G G + + + A
Sbjct: 251 GGGGGGGGGGGSGGGGGGGGAGAGGAGAGAVAAAAAAAA 289
Score = 34.3 bits (77), Expect = 0.63
Identities = 14/29 (48%), Positives = 15/29 (51%)
Query: 6 GKGAAAAAAASGAAGGGGGGAGAGAPGGG 34
G A G GGGGGG+G G GGG
Sbjct: 242 GYSRPGAGGGGGGGGGGGGGSGGGGGGGG 270
Score = 32.7 bits (73), Expect = 1.8
Identities = 13/29 (44%), Positives = 13/29 (44%)
Query: 6 GKGAAAAAAASGAAGGGGGGAGAGAPGGG 34
G G G G GGGG G GA GG
Sbjct: 247 GAGGGGGGGGGGGGGSGGGGGGGGAGAGG 275
Score = 32.7 bits (73), Expect = 1.8
Identities = 15/28 (53%), Positives = 16/28 (57%)
Query: 6 GKGAAAAAAASGAAGGGGGGAGAGAPGG 33
G GA A AAA+ AA GG G G GG
Sbjct: 275 GAGAGAVAAAAAAAAAAAGGGGGGGYGG 302
>gi|40068462 AT rich interactive domain 1B (SWI1-like) isoform 3
[Homo sapiens]
Length = 2178
Score = 37.7 bits (86), Expect = 0.057
Identities = 20/34 (58%), Positives = 23/34 (67%)
Query: 6 GKGAAAAAAASGAAGGGGGGAGAGAPGGGRLLLS 39
G AAAAAAA+ AAGGGGGG G+ G +L S
Sbjct: 279 GAVAAAAAAAAAAAGGGGGGGYGGSSAGYGVLSS 312
Score = 37.4 bits (85), Expect = 0.074
Identities = 21/36 (58%), Positives = 24/36 (66%), Gaps = 1/36 (2%)
Query: 6 GKGA-AAAAAASGAAGGGGGGAGAGAPGGGRLLLST 40
G GA AAAAAA+ AA GGGGG G G G +LS+
Sbjct: 277 GAGAVAAAAAAAAAAAGGGGGGGYGGSSAGYGVLSS 312
Score = 36.6 bits (83), Expect = 0.13
Identities = 15/29 (51%), Positives = 16/29 (55%)
Query: 6 GKGAAAAAAASGAAGGGGGGAGAGAPGGG 34
G G G +GGGGGG GAGA G G
Sbjct: 249 GGGGGGGGGGGGGSGGGGGGGGAGAGGAG 277
Score = 34.7 bits (78), Expect = 0.48
Identities = 14/27 (51%), Positives = 16/27 (59%)
Query: 8 GAAAAAAASGAAGGGGGGAGAGAPGGG 34
G + A G GGGGGG G+G GGG
Sbjct: 242 GYSRPGAGGGGGGGGGGGGGSGGGGGG 268
Score = 34.7 bits (78), Expect = 0.48
Identities = 15/39 (38%), Positives = 18/39 (46%)
Query: 6 GKGAAAAAAASGAAGGGGGGAGAGAPGGGRLLLSTSLDA 44
G G GGGGGGAGAG G G + + + A
Sbjct: 251 GGGGGGGGGGGSGGGGGGGGAGAGGAGAGAVAAAAAAAA 289
Score = 34.3 bits (77), Expect = 0.63
Identities = 14/29 (48%), Positives = 15/29 (51%)
Query: 6 GKGAAAAAAASGAAGGGGGGAGAGAPGGG 34
G A G GGGGGG+G G GGG
Sbjct: 242 GYSRPGAGGGGGGGGGGGGGSGGGGGGGG 270
Score = 32.7 bits (73), Expect = 1.8
Identities = 13/29 (44%), Positives = 13/29 (44%)
Query: 6 GKGAAAAAAASGAAGGGGGGAGAGAPGGG 34
G G G G GGGG G GA GG
Sbjct: 247 GAGGGGGGGGGGGGGSGGGGGGGGAGAGG 275
Score = 32.7 bits (73), Expect = 1.8
Identities = 15/28 (53%), Positives = 16/28 (57%)
Query: 6 GKGAAAAAAASGAAGGGGGGAGAGAPGG 33
G GA A AAA+ AA GG G G GG
Sbjct: 275 GAGAGAVAAAAAAAAAAAGGGGGGGYGG 302
>gi|224591404 cancer/testis antigen family 147, member B1 [Homo
sapiens]
Length = 299
Score = 37.4 bits (85), Expect = 0.074
Identities = 26/96 (27%), Positives = 43/96 (44%), Gaps = 7/96 (7%)
Query: 947 ILQALQHVQASCDEAHKMKFSDLFSLAEE--YEDSSTKPPKSRRKAALSSPRSRKNATQP 1004
++Q VQ + +DL +A E E + KPP+ + L+ + AT+
Sbjct: 189 LIQEAASVQEAASVPEPAVPADLAEMAREPAEEAADEKPPEEAAEEKLT-----EEATEE 243
Query: 1005 PNAEEESGSSSASEEEDTKPKPTKRKRKGSSAVGSD 1040
P AEE + + + EE TK +P K + A G +
Sbjct: 244 PAAEEPTSEEAVAPEEVTKSQPEKWDEEAQDAAGEE 279
>gi|116284398 WAS/WASL interacting protein family, member 1 [Homo
sapiens]
Length = 503
Score = 37.4 bits (85), Expect = 0.074
Identities = 17/32 (53%), Positives = 17/32 (53%)
Query: 3 LQKGKGAAAAAAASGAAGGGGGGAGAGAPGGG 34
L K KGA A G GGGG G G G GGG
Sbjct: 59 LDKPKGAGAGGGGGGFGGGGGFGGGGGGGGGG 90
>gi|38373695 WAS/WASL interacting protein family, member 1 [Homo
sapiens]
Length = 503
Score = 37.4 bits (85), Expect = 0.074
Identities = 17/32 (53%), Positives = 17/32 (53%)
Query: 3 LQKGKGAAAAAAASGAAGGGGGGAGAGAPGGG 34
L K KGA A G GGGG G G G GGG
Sbjct: 59 LDKPKGAGAGGGGGGFGGGGGFGGGGGGGGGG 90
>gi|219555718 synaptonemal complex central element protein 1 isoform 4
[Homo sapiens]
Length = 351
Score = 37.4 bits (85), Expect = 0.074
Identities = 45/212 (21%), Positives = 85/212 (40%), Gaps = 22/212 (10%)
Query: 829 QHLKYKEHPEALSCLLLQLRREKPSEEMVKMVLSRPCHPDDQFTTSILRH---WCMKHDE 885
+H +E E +S L LQ+ EK + +++ ++Q + +H W E
Sbjct: 126 KHTMLQECKERISALNLQIEEEKNKQRQLRLAF------EEQLEDLMGQHKDLWDFHMPE 179
Query: 886 LLAEHIKSLLIKNNSLPRKRQSLRSSSSKLAQLTLEQILEHLDNL--RLNLTNTKQNFFS 943
LA+ I +L L ++ KL + TLE + L +L + + F
Sbjct: 180 RLAKEICALDSSKEQLLKEE--------KLVKATLEDVKHQLCSLCGAEGPSTLDEGLFL 231
Query: 944 QTPILQALQHVQASCDEAHKMKFSDLFSLAEEYEDSSTKPPKSRRKAALSSPRSRKNATQ 1003
++ +A VQ +E H+ L + A+ ++ K + ++K K+ Q
Sbjct: 232 RSQ--EAAATVQLFQEE-HRKAEELLAAAAQRHQQLQQKCQQQQQKRQRLKEELEKHGMQ 288
Query: 1004 PPNAEEESGSSSASEEEDTKPKPTKRKRKGSS 1035
P + + A + PKP K +R G++
Sbjct: 289 VPAQAQSTQEEEAGPGDVASPKPLKGERPGAA 320
>gi|224586823 coiled-coil domain containing 110 isoform b [Homo
sapiens]
Length = 796
Score = 37.0 bits (84), Expect = 0.097
Identities = 37/162 (22%), Positives = 67/162 (41%), Gaps = 9/162 (5%)
Query: 822 ETIIPILQHLKYKEHPEALSCLLLQLRREKPSEEMVKMVLSRPCHPDDQFTTSILRHWCM 881
+ ++ L LK KEH ++ + S EM M + D++ H +
Sbjct: 500 QQMMEALDQLKSKEHKTQSDMAIVNNENNRMSIEMEAMKTNILLIQDEKEMLEKKTHQLL 559
Query: 882 KHDELLAEHIKSLLIKNNSLPRKRQSLRSSSSKLAQLTLEQILEHLDNLRLNLTNTKQNF 941
K L +K ++ L K + +K Q TL QI+E + + +LNL T Q
Sbjct: 560 KEKSSLGNELKESQLEIIQLKEKERL-----AKTEQETLLQIIETVKDEKLNLETTLQES 614
Query: 942 FSQTPILQA----LQHVQASCDEAHKMKFSDLFSLAEEYEDS 979
+ I++ +Q Q++ +E + + S A Y++S
Sbjct: 615 TAARQIMEREIENIQTYQSTAEENFLQEIKNAKSEASIYKNS 656
>gi|22749515 coiled-coil domain containing 110 isoform a [Homo
sapiens]
Length = 833
Score = 37.0 bits (84), Expect = 0.097
Identities = 37/162 (22%), Positives = 67/162 (41%), Gaps = 9/162 (5%)
Query: 822 ETIIPILQHLKYKEHPEALSCLLLQLRREKPSEEMVKMVLSRPCHPDDQFTTSILRHWCM 881
+ ++ L LK KEH ++ + S EM M + D++ H +
Sbjct: 537 QQMMEALDQLKSKEHKTQSDMAIVNNENNRMSIEMEAMKTNILLIQDEKEMLEKKTHQLL 596
Query: 882 KHDELLAEHIKSLLIKNNSLPRKRQSLRSSSSKLAQLTLEQILEHLDNLRLNLTNTKQNF 941
K L +K ++ L K + +K Q TL QI+E + + +LNL T Q
Sbjct: 597 KEKSSLGNELKESQLEIIQLKEKERL-----AKTEQETLLQIIETVKDEKLNLETTLQES 651
Query: 942 FSQTPILQA----LQHVQASCDEAHKMKFSDLFSLAEEYEDS 979
+ I++ +Q Q++ +E + + S A Y++S
Sbjct: 652 TAARQIMEREIENIQTYQSTAEENFLQEIKNAKSEASIYKNS 693
>gi|4502565 calpain, small subunit 1 [Homo sapiens]
Length = 268
Score = 36.6 bits (83), Expect = 0.13
Identities = 16/29 (55%), Positives = 16/29 (55%)
Query: 6 GKGAAAAAAASGAAGGGGGGAGAGAPGGG 34
G G SGA GGGGGG G G GGG
Sbjct: 24 GLGNVLGGLISGAGGGGGGGGGGGGGGGG 52
Score = 35.0 bits (79), Expect = 0.37
Identities = 14/27 (51%), Positives = 15/27 (55%)
Query: 8 GAAAAAAASGAAGGGGGGAGAGAPGGG 34
G + A G GGGGGG G G GGG
Sbjct: 30 GGLISGAGGGGGGGGGGGGGGGGGGGG 56
Score = 30.8 bits (68), Expect = 7.0
Identities = 14/38 (36%), Positives = 17/38 (44%)
Query: 10 AAAAAASGAAGGGGGGAGAGAPGGGRLLLSTSLDAKDE 47
+ A G GGGGGG G G G +L + A E
Sbjct: 34 SGAGGGGGGGGGGGGGGGGGGGGTAMRILGGVISAISE 71
>gi|51599151 calpain, small subunit 1 [Homo sapiens]
Length = 268
Score = 36.6 bits (83), Expect = 0.13
Identities = 16/29 (55%), Positives = 16/29 (55%)
Query: 6 GKGAAAAAAASGAAGGGGGGAGAGAPGGG 34
G G SGA GGGGGG G G GGG
Sbjct: 24 GLGNVLGGLISGAGGGGGGGGGGGGGGGG 52
Score = 35.0 bits (79), Expect = 0.37
Identities = 14/27 (51%), Positives = 15/27 (55%)
Query: 8 GAAAAAAASGAAGGGGGGAGAGAPGGG 34
G + A G GGGGGG G G GGG
Sbjct: 30 GGLISGAGGGGGGGGGGGGGGGGGGGG 56
Score = 30.8 bits (68), Expect = 7.0
Identities = 14/38 (36%), Positives = 17/38 (44%)
Query: 10 AAAAAASGAAGGGGGGAGAGAPGGGRLLLSTSLDAKDE 47
+ A G GGGGGG G G G +L + A E
Sbjct: 34 SGAGGGGGGGGGGGGGGGGGGGGTAMRILGGVISAISE 71
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.134 0.391
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 39,547,213
Number of Sequences: 37866
Number of extensions: 1830584
Number of successful extensions: 21114
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 226
Number of HSP's successfully gapped in prelim test: 110
Number of HSP's that attempted gapping in prelim test: 16185
Number of HSP's gapped (non-prelim): 3420
length of query: 1042
length of database: 18,247,518
effective HSP length: 112
effective length of query: 930
effective length of database: 14,006,526
effective search space: 13026069180
effective search space used: 13026069180
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 67 (30.4 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.