BLASTP 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|124249392 DNL-type zinc finger [Homo sapiens] (178 letters) Database: hs.faa 37,866 sequences; 18,247,518 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|124249392 DNL-type zinc finger [Homo sapiens] 370 e-103 gi|239749167 PREDICTED: hypothetical protein XP_002346933 [Homo ... 32 0.38 gi|4503811 fucosyltransferase 4 [Homo sapiens] 31 0.64 gi|239745342 PREDICTED: hypothetical protein XP_002343430 [Homo ... 30 1.1 gi|239752764 PREDICTED: hypothetical protein [Homo sapiens] 30 1.4 gi|5174411 CD5 molecule-like [Homo sapiens] 30 1.4 gi|145386551 SH3 domain and tetratricopeptide repeats 1 [Homo sa... 30 1.4 gi|14249488 zinc finger and SCAN domain containing 10 [Homo sapi... 30 1.4 gi|239755232 PREDICTED: hypothetical protein [Homo sapiens] 29 1.9 gi|239749768 PREDICTED: hypothetical protein [Homo sapiens] 29 1.9 gi|239744027 PREDICTED: hypothetical protein XP_002343007 [Homo ... 29 1.9 gi|47551347 protease, serine-like 1 [Homo sapiens] 29 1.9 gi|210147475 zinc finger protein 92 homolog [Homo sapiens] 29 1.9 gi|30795231 brain abundant, membrane attached signal protein 1 [... 29 2.4 gi|36950991 nuclear receptor subfamily 2, group C, member 2 [Hom... 29 2.4 gi|239757769 PREDICTED: similar to RAN binding protein 1 [Homo s... 28 3.2 gi|239757317 PREDICTED: hypothetical protein [Homo sapiens] 28 3.2 gi|239746745 PREDICTED: hypothetical protein XP_002343805 [Homo ... 28 3.2 gi|4506671 ribosomal protein P2 [Homo sapiens] 28 3.2 gi|182507165 thymus expressed gene 3-like [Homo sapiens] 28 3.2 gi|119120877 zinc finger protein 721 [Homo sapiens] 28 3.2 gi|48255918 RAR-related orphan receptor C isoform b [Homo sapiens] 28 4.1 gi|19743909 RAR-related orphan receptor C isoform a [Homo sapiens] 28 4.1 gi|62868210 GIY-YIG domain containing 1 isoform 2 [Homo sapiens] 28 4.1 gi|239756378 PREDICTED: similar to hCG2004312 isoform 2 [Homo sa... 28 4.1 gi|169209083 PREDICTED: similar to hCG2004312 isoform 1 [Homo sa... 28 4.1 gi|239745291 PREDICTED: hypothetical protein XP_002343418 isofor... 28 4.1 gi|239745289 PREDICTED: hypothetical protein XP_002343419 isofor... 28 4.1 gi|153070260 myristoylated alanine-rich protein kinase C substra... 28 4.1 gi|19743907 RAR-related orphan receptor B [Homo sapiens] 28 4.1 >gi|124249392 DNL-type zinc finger [Homo sapiens] Length = 178 Score = 370 bits (949), Expect = e-103 Identities = 178/178 (100%), Positives = 178/178 (100%) Query: 1 MLRTALRGAPRLLSRVQPRAPCLRRLWGRGARPEVAGRRRAWAWGWRRSSSEQGPGPAAA 60 MLRTALRGAPRLLSRVQPRAPCLRRLWGRGARPEVAGRRRAWAWGWRRSSSEQGPGPAAA Sbjct: 1 MLRTALRGAPRLLSRVQPRAPCLRRLWGRGARPEVAGRRRAWAWGWRRSSSEQGPGPAAA 60 Query: 61 LGRVEAAHYQLVYTCKVCGTRSSKRISKLAYHQGVVIVTCPGCQNHHIIADNLGWFSDLN 120 LGRVEAAHYQLVYTCKVCGTRSSKRISKLAYHQGVVIVTCPGCQNHHIIADNLGWFSDLN Sbjct: 61 LGRVEAAHYQLVYTCKVCGTRSSKRISKLAYHQGVVIVTCPGCQNHHIIADNLGWFSDLN 120 Query: 121 GKRNIEEILTARGEQVHRVAGEGALELVLEAAGAPTSTAAPEAGEDEGPPSPGKTEPS 178 GKRNIEEILTARGEQVHRVAGEGALELVLEAAGAPTSTAAPEAGEDEGPPSPGKTEPS Sbjct: 121 GKRNIEEILTARGEQVHRVAGEGALELVLEAAGAPTSTAAPEAGEDEGPPSPGKTEPS 178 >gi|239749167 PREDICTED: hypothetical protein XP_002346933 [Homo sapiens] Length = 399 Score = 31.6 bits (70), Expect = 0.38 Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 7/65 (10%) Query: 38 RRRAWAWGWRRSSSEQGPGPAAALGRVEAAHYQLVYTCKVCGTRSSKRISKLAYHQGVVI 97 +RRA + WRR QGP P + +G+ +A L C+ CG +++ ++ G ++ Sbjct: 255 QRRALSLVWRRGQGRQGPEPPSPVGQAQA----LEEACE-CGVDTAR--PEVGGPHGPLL 307 Query: 98 VTCPG 102 V PG Sbjct: 308 VAPPG 312 >gi|4503811 fucosyltransferase 4 [Homo sapiens] Length = 530 Score = 30.8 bits (68), Expect = 0.64 Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 4/45 (8%) Query: 23 LRRLWGRGARPEVAGRRRAWAWGWRRS----SSEQGPGPAAALGR 63 +RRLWG +P AG + WA + + S GPG + GR Sbjct: 1 MRRLWGAARKPSGAGWEKEWAEAPQEAPGAWSGRLGPGRSGRKGR 45 >gi|239745342 PREDICTED: hypothetical protein XP_002343430 [Homo sapiens] Length = 230 Score = 30.0 bits (66), Expect = 1.1 Identities = 20/43 (46%), Positives = 23/43 (53%), Gaps = 4/43 (9%) Query: 17 QPRAP--CLRRLWGRGARPEVAGRRRAW-AWGWRRSSSEQGPG 56 QPR C RR WG RP AGR R W + G S + +GPG Sbjct: 27 QPRLTLHCNRR-WGARRRPRRAGRGRRWGSLGTNGSLTGRGPG 68 >gi|239752764 PREDICTED: hypothetical protein [Homo sapiens] Length = 370 Score = 29.6 bits (65), Expect = 1.4 Identities = 21/53 (39%), Positives = 22/53 (41%), Gaps = 1/53 (1%) Query: 5 ALRGAPRLLSRV-QPRAPCLRRLWGRGARPEVAGRRRAWAWGWRRSSSEQGPG 56 A RGA L R + R P R W R AR E R A W R S G G Sbjct: 310 ARRGARELAPRAGRRRQPSGRTSWRRRARREQRDREPAVCGAWPRGSHAAGAG 362 >gi|5174411 CD5 molecule-like [Homo sapiens] Length = 347 Score = 29.6 bits (65), Expect = 1.4 Identities = 20/54 (37%), Positives = 24/54 (44%), Gaps = 5/54 (9%) Query: 56 GPAAALGRVEAAHYQLVYTCKVCGTRSSKRISKLAYHQ---GVVIVTCPGCQNH 106 GP GRVE H YT VC T S R +K+ Q G ++T C H Sbjct: 143 GPGHCKGRVEVKHQNQWYT--VCQTGWSLRAAKVVCRQLGCGRAVLTQKRCNKH 194 >gi|145386551 SH3 domain and tetratricopeptide repeats 1 [Homo sapiens] Length = 1336 Score = 29.6 bits (65), Expect = 1.4 Identities = 17/35 (48%), Positives = 21/35 (60%), Gaps = 3/35 (8%) Query: 138 RVAGEGALELVLEAAGAPTSTAAPEAGEDEGPPSP 172 R AG G + + +A+GAP AAPE D PPSP Sbjct: 228 RDAGNGP-QALRQASGAPQGEAAPET--DSSPPSP 259 >gi|14249488 zinc finger and SCAN domain containing 10 [Homo sapiens] Length = 725 Score = 29.6 bits (65), Expect = 1.4 Identities = 22/80 (27%), Positives = 33/80 (41%), Gaps = 14/80 (17%) Query: 38 RRRAWAWGWRRSSSEQGPGPAAALGRVEAAHYQLV-----------YTCKVCG---TRSS 83 RR + G RR S++ P + G+ LV ++C+ CG T+SS Sbjct: 449 RRSSEGSGSRRRDSDRRPFVCSDCGKAFRRSEHLVAHRRVHTGERPFSCQACGRSFTQSS 508 Query: 84 KRISKLAYHQGVVIVTCPGC 103 + +S H G CP C Sbjct: 509 QLVSHQRVHTGEKPYACPQC 528 >gi|239755232 PREDICTED: hypothetical protein [Homo sapiens] Length = 501 Score = 29.3 bits (64), Expect = 1.9 Identities = 30/82 (36%), Positives = 35/82 (42%), Gaps = 31/82 (37%) Query: 7 RGAPRLLSRVQPRAPCLRRLWGRGARPEVAGRRRAWAWGWRRSSSEQGP----------- 55 R P LL+R PRAP LRRL AGRR RR+++ GP Sbjct: 309 RPRPHLLTRCPPRAPRLRRL--------EAGRR------LRRTAAPLGPVAGAGSSFGGR 354 Query: 56 --GPAAALG----RVEAAHYQL 71 P+ ALG EA HY L Sbjct: 355 PHRPSLALGSDRRSPEAPHYLL 376 >gi|239749768 PREDICTED: hypothetical protein [Homo sapiens] Length = 591 Score = 29.3 bits (64), Expect = 1.9 Identities = 30/82 (36%), Positives = 35/82 (42%), Gaps = 31/82 (37%) Query: 7 RGAPRLLSRVQPRAPCLRRLWGRGARPEVAGRRRAWAWGWRRSSSEQGP----------- 55 R P LL+R PRAP LRRL AGRR RR+++ GP Sbjct: 399 RPRPHLLTRCPPRAPRLRRL--------EAGRR------LRRTAAPLGPVAGAGSSFGGR 444 Query: 56 --GPAAALG----RVEAAHYQL 71 P+ ALG EA HY L Sbjct: 445 PHRPSLALGSDRRSPEAPHYLL 466 >gi|239744027 PREDICTED: hypothetical protein XP_002343007 [Homo sapiens] Length = 591 Score = 29.3 bits (64), Expect = 1.9 Identities = 30/82 (36%), Positives = 35/82 (42%), Gaps = 31/82 (37%) Query: 7 RGAPRLLSRVQPRAPCLRRLWGRGARPEVAGRRRAWAWGWRRSSSEQGP----------- 55 R P LL+R PRAP LRRL AGRR RR+++ GP Sbjct: 399 RPRPHLLTRCPPRAPRLRRL--------EAGRR------LRRTAAPLGPVAGAGSSFGGR 444 Query: 56 --GPAAALG----RVEAAHYQL 71 P+ ALG EA HY L Sbjct: 445 PHRPSLALGSDRRSPEAPHYLL 466 >gi|47551347 protease, serine-like 1 [Homo sapiens] Length = 283 Score = 29.3 bits (64), Expect = 1.9 Identities = 20/43 (46%), Positives = 21/43 (48%), Gaps = 1/43 (2%) Query: 23 LRRLWGRGARPEVAGRR-RAWAWGWRRSSSEQGPGPAAALGRV 64 L RL GR ARP AG R R WG+ E PG A RV Sbjct: 140 LLRLPGRRARPPTAGTRCRVAGWGFVSDFEELPPGLMEAKVRV 182 >gi|210147475 zinc finger protein 92 homolog [Homo sapiens] Length = 416 Score = 29.3 bits (64), Expect = 1.9 Identities = 18/54 (33%), Positives = 23/54 (42%), Gaps = 3/54 (5%) Query: 53 QGPGPAAALGRVEAAHYQLVYTCKVCG---TRSSKRISKLAYHQGVVIVTCPGC 103 QG G ++A G + Y C+ CG +RSS I H G CP C Sbjct: 132 QGLGQSSAAGPQGPKGAEKRYLCQQCGKAFSRSSNLIKHRIIHSGEKPYACPEC 185 >gi|30795231 brain abundant, membrane attached signal protein 1 [Homo sapiens] Length = 227 Score = 28.9 bits (63), Expect = 2.4 Identities = 17/38 (44%), Positives = 20/38 (52%), Gaps = 3/38 (7%) Query: 140 AGEGALELVLEAAGAPTSTAAPEAGEDEGPPSPGKTEP 177 A G EAA AP +AAP AGE+ PS + EP Sbjct: 114 AAGGEAPKAAEAAAAPAESAAPAAGEE---PSKEEGEP 148 >gi|36950991 nuclear receptor subfamily 2, group C, member 2 [Homo sapiens] Length = 615 Score = 28.9 bits (63), Expect = 2.4 Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 8/44 (18%) Query: 61 LGRVEAAHYQLVYTCKVCGTRSSKRISKLAYHQGVVIVTCPGCQ 104 LG+ + Q+V C VCG ++S R H G V+C GC+ Sbjct: 122 LGKTDVQRPQVVEYCVVCGDKASGR------HYGA--VSCEGCK 157 >gi|239757769 PREDICTED: similar to RAN binding protein 1 [Homo sapiens] Length = 178 Score = 28.5 bits (62), Expect = 3.2 Identities = 18/69 (26%), Positives = 29/69 (42%), Gaps = 6/69 (8%) Query: 36 AGRRRAWAWGWRRSSSEQGPGPAAALGRVEAAHYQLVYTCKVCGTRSSKRISKLAYHQGV 95 AG RAW W +++ P P RV A +L C ++S+ ++ + Sbjct: 114 AGSDRAWVWNTHADFADECPKPEL---RVAAVALELQAKLSNCNGDPQWQLSE---NERL 167 Query: 96 VIVTCPGCQ 104 + C GCQ Sbjct: 168 ALFLCQGCQ 176 >gi|239757317 PREDICTED: hypothetical protein [Homo sapiens] Length = 198 Score = 28.5 bits (62), Expect = 3.2 Identities = 15/31 (48%), Positives = 15/31 (48%) Query: 28 GRGARPEVAGRRRAWAWGWRRSSSEQGPGPA 58 GRG V G WA G R SS GPG A Sbjct: 157 GRGKVAAVGGPGTTWARGPRTSSPRAGPGAA 187 >gi|239746745 PREDICTED: hypothetical protein XP_002343805 [Homo sapiens] Length = 101 Score = 28.5 bits (62), Expect = 3.2 Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 2/40 (5%) Query: 27 WGR-GARPEVAGRRRA-WAWGWRRSSSEQGPGPAAALGRV 64 W R A P +A RR W W R ++ +G GPA AL R+ Sbjct: 35 WPRLAAAPALACHRRPRWRWTGRHLAALRGLGPAGALRRL 74 >gi|4506671 ribosomal protein P2 [Homo sapiens] Length = 115 Score = 28.5 bits (62), Expect = 3.2 Identities = 19/63 (30%), Positives = 34/63 (53%), Gaps = 2/63 (3%) Query: 117 SDLNGKRNIEEILTARGEQVHRVAGEGALEL-VLEAAGAPTSTAAPEAGEDEGPPSPGKT 175 S+LNGK NIE+++ ++ V GA+ + + AP + +AP A E++ ++ Sbjct: 44 SELNGK-NIEDVIAQGIGKLASVPAGGAVAVSAAPGSAAPAAGSAPAAAEEKKDEKKEES 102 Query: 176 EPS 178 E S Sbjct: 103 EES 105 >gi|182507165 thymus expressed gene 3-like [Homo sapiens] Length = 629 Score = 28.5 bits (62), Expect = 3.2 Identities = 18/41 (43%), Positives = 19/41 (46%), Gaps = 5/41 (12%) Query: 19 RAPCLRRLWGRGARPEVAGRRRAWAWGWRRSSSEQGPGPAA 59 R P L R+ G P A RAWA W SE P PAA Sbjct: 303 REPSLERVGGHPTSP--AALSRAWASSW---ESEAAPEPAA 338 >gi|119120877 zinc finger protein 721 [Homo sapiens] Length = 923 Score = 28.5 bits (62), Expect = 3.2 Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 5/54 (9%) Query: 73 YTCKVCGTRSSKRISKLAYHQGVVIVTCP-GCQNHHIIADNLGWFSDLNGKRNI 125 + C CG +S ++ S L H+G+ P C+ + GW++DLN + I Sbjct: 109 FKCNECG-KSFQKFSDLTQHKGIHAGEKPYTCEER---GKDFGWYTDLNQHKKI 158 >gi|48255918 RAR-related orphan receptor C isoform b [Homo sapiens] Length = 497 Score = 28.1 bits (61), Expect = 4.1 Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 8/33 (24%) Query: 72 VYTCKVCGTRSSKRISKLAYHQGVVIVTCPGCQ 104 V CK+CG +SS H GV +TC GC+ Sbjct: 7 VIPCKICGDKSS------GIHYGV--ITCEGCK 31 >gi|19743909 RAR-related orphan receptor C isoform a [Homo sapiens] Length = 518 Score = 28.1 bits (61), Expect = 4.1 Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 8/33 (24%) Query: 72 VYTCKVCGTRSSKRISKLAYHQGVVIVTCPGCQ 104 V CK+CG +SS H GV +TC GC+ Sbjct: 28 VIPCKICGDKSS------GIHYGV--ITCEGCK 52 >gi|62868210 GIY-YIG domain containing 1 isoform 2 [Homo sapiens] Length = 161 Score = 28.1 bits (61), Expect = 4.1 Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 5/39 (12%) Query: 138 RVAGEGALELVLEAAGAPTSTAAPEAGEDEGP---PSPG 173 R +G G E+VL G P+S AA ++EGP P PG Sbjct: 56 RTSGRGPWEMVLVVHGFPSSVAA--LRDEEGPLCCPHPG 92 >gi|239756378 PREDICTED: similar to hCG2004312 isoform 2 [Homo sapiens] Length = 185 Score = 28.1 bits (61), Expect = 4.1 Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 1/33 (3%) Query: 28 GRGARPEVAGRRRAWAWGWRRSSSEQGPGPAAA 60 G G+R R W+WG + S+S GP P AA Sbjct: 3 GCGSRRLYGSWRGCWSWGGKPSTS-SGPSPTAA 34 >gi|169209083 PREDICTED: similar to hCG2004312 isoform 1 [Homo sapiens] Length = 230 Score = 28.1 bits (61), Expect = 4.1 Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 1/33 (3%) Query: 28 GRGARPEVAGRRRAWAWGWRRSSSEQGPGPAAA 60 G G+R R W+WG + S+S GP P AA Sbjct: 3 GCGSRRLYGSWRGCWSWGGKPSTS-SGPSPTAA 34 >gi|239745291 PREDICTED: hypothetical protein XP_002343418 isoform 1 [Homo sapiens] Length = 185 Score = 28.1 bits (61), Expect = 4.1 Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 1/33 (3%) Query: 28 GRGARPEVAGRRRAWAWGWRRSSSEQGPGPAAA 60 G G+R R W+WG + S+S GP P AA Sbjct: 3 GCGSRRLYGSWRGCWSWGGKPSTS-SGPSPTAA 34 >gi|239745289 PREDICTED: hypothetical protein XP_002343419 isoform 2 [Homo sapiens] Length = 230 Score = 28.1 bits (61), Expect = 4.1 Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 1/33 (3%) Query: 28 GRGARPEVAGRRRAWAWGWRRSSSEQGPGPAAA 60 G G+R R W+WG + S+S GP P AA Sbjct: 3 GCGSRRLYGSWRGCWSWGGKPSTS-SGPSPTAA 34 >gi|153070260 myristoylated alanine-rich protein kinase C substrate [Homo sapiens] Length = 332 Score = 28.1 bits (61), Expect = 4.1 Identities = 26/86 (30%), Positives = 34/86 (39%), Gaps = 12/86 (13%) Query: 102 GCQNHHIIADNLGWFSDLNGKRNIEEILTARG------EQVHRVAGEGALELVLEAAGAP 155 G +N H+ + G S + +E L A G ++ AG GA G P Sbjct: 33 GQENGHVKVN--GDASPAAAESGAKEELQANGSAPAADKEEPAAAGSGAASPSAAEKGEP 90 Query: 156 TSTAAPEAG----EDEGPPSPGKTEP 177 + AAPEAG E E P EP Sbjct: 91 AAAAAPEAGASPVEKEAPAEGEAAEP 116 Score = 28.1 bits (61), Expect = 4.1 Identities = 22/60 (36%), Positives = 28/60 (46%), Gaps = 10/60 (16%) Query: 121 GKRNIEEILTARGEQVHR---VAGEGALELVLEAAGAPTSTAAPEAGEDEGPPSPGKTEP 177 G +E+ A GE A EG EAA A +ST++P+A ED PSP P Sbjct: 99 GASPVEKEAPAEGEAAEPGSPTAAEG------EAASAASSTSSPKA-EDGATPSPSNETP 151 >gi|19743907 RAR-related orphan receptor B [Homo sapiens] Length = 459 Score = 28.1 bits (61), Expect = 4.1 Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 8/33 (24%) Query: 72 VYTCKVCGTRSSKRISKLAYHQGVVIVTCPGCQ 104 V CK+CG +SS H GV +TC GC+ Sbjct: 7 VIPCKICGDKSS------GIHYGV--ITCEGCK 31 Database: hs.faa Posted date: Aug 4, 2009 4:42 PM Number of letters in database: 18,247,518 Number of sequences in database: 37,866 Lambda K H 0.317 0.133 0.424 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 8,209,337 Number of Sequences: 37866 Number of extensions: 389696 Number of successful extensions: 2241 Number of sequences better than 10.0: 30 Number of HSP's better than 10.0 without gapping: 22 Number of HSP's successfully gapped in prelim test: 41 Number of HSP's that attempted gapping in prelim test: 2187 Number of HSP's gapped (non-prelim): 97 length of query: 178 length of database: 18,247,518 effective HSP length: 96 effective length of query: 82 effective length of database: 14,612,382 effective search space: 1198215324 effective search space used: 1198215324 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.