Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: LOC100288367 Sequence: fasta or formatted (230aa) NCBI GI: 239745289
Description:

PREDICTED: hypothetical protein XP_002343419 isoform 2

Not currently referenced in the text

Other entries for this name:
alt prot {185aa} PREDICTED: hypothetical protein XP_002343418 isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.9         25           2
 C cysteine            3.0          7           2
 D aspartate           2.2          5           1
 E glutamate           9.1         21           2
 F phenylalanine       1.3          3           2
 G glycine            14.8         34           3
 H histidine           2.6          6           1
 I isoleucine          0.4          1           1
 K lysine              4.3         10           2
 L leucine             6.5         15           1
 M methionine          2.2          5           1
 N asparagine          2.6          6           2
 P proline             7.8         18           1
 Q glutamine           7.8         18           2
 R arginine            5.7         13           2
 S serine              9.1         21           2
 T threonine           3.0          7           1
 V valine              3.9          9           1
 W tryptophan          1.7          4           1
 Y tyrosine            0.9          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002343419 isofor... 
LOC100131930          0.996   PREDICTED: similar to hCG2004312 isoform 1 
LOC100288367          0.750   PREDICTED: hypothetical protein XP_002343418 isofor...
LOC100131930          0.748   PREDICTED: similar to hCG2004312 isoform 2 
LOC727751             0.526   PREDICTED: similar to cis-Golgi matrix protein GM13...
LOC642423             0.522   PREDICTED: similar to hCG2004312 
GOLGA2                0.252   Golgi autoantigen, golgin subfamily a, 2 
GOLGA8G               0.246   golgi autoantigen, golgin subfamily a, 8G 
LOC728477             0.237   PREDICTED: similar to hCG27445 
LOC728477             0.237   PREDICTED: similar to hCG27445 
GOLGA8E               0.230   golgi autoantigen, golgin subfamily a, 8E 
LOC390561             0.217   PREDICTED: similar to hect domain and RLD 2 
LOC653061             0.206   PREDICTED: similar to Golgin subfamily A member 8-l...
LOC653073             0.204   PREDICTED: Golgin subfamily A member 8-like protein...
LOC728498             0.202   PREDICTED: similar to Golgin subfamily A member 8-l...
LOC728080             0.200   PREDICTED: similar to Golgin subfamily A member 8-l...
LOC728047             0.197   PREDICTED: similar to Golgin subfamily A member 8-l...
LOC727909             0.197   PREDICTED: similar to Golgin subfamily A member 8-l...
LOC653720             0.195   PREDICTED: similar to Golgin subfamily A member 8-l...
LOC653125             0.193   PREDICTED: similar to Golgin subfamily A member 8-l...
LOC643699             0.191   PREDICTED: similar to golgi autoantigen, golgin sub...
LOC100131297          0.169   PREDICTED: similar to Putative golgin subfamily A m...
LOC100131297          0.169   PREDICTED: similar to Putative golgin subfamily A m...
LOC728477             0.164   PREDICTED: similar to hCG27445 
LOC653073             0.149   PREDICTED: Golgin subfamily A member 8-like protein...
GOLGA6D               0.149   golgi autoantigen, golgin subfamily a, 6D 
GOLGA6C               0.149   PREDICTED: golgi autoantigen, golgin subfamily a, 6C...
GOLGA6B               0.149   golgi autoantigen, golgin subfamily a, 6B 
GOLGA6                0.149   golgi autoantigen, golgin subfamily a, 6 
GOLGA2L1              0.121   golgi autoantigen, golgin subfamily a, 2-like 1 [Hom...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press