Guide to the Human Genome
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Name: LOC100287184 Sequence: fasta or formatted (101aa) NCBI GI: 239746745
Description:

PREDICTED: hypothetical protein XP_002343805

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            15.8         16           3
 C cysteine            1.0          1           1
 D aspartate           3.0          3           1
 E glutamate           5.0          5           2
 F phenylalanine       3.0          3           1
 G glycine            11.9         12           3
 H histidine           5.0          5           1
 I isoleucine          0.0          0           0
 K lysine              1.0          1           1
 L leucine            13.9         14           2
 M methionine          1.0          1           1
 N asparagine          1.0          1           1
 P proline             6.9          7           1
 Q glutamine           5.9          6           2
 R arginine           13.9         14           2
 S serine              2.0          2           1
 T threonine           3.0          3           1
 V valine              3.0          3           1
 W tryptophan          3.0          3           1
 Y tyrosine            1.0          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002343805 
NXPH4                 0.053   neurexophilin 4 
LOC100293554          0.027   PREDICTED: hypothetical protein 
LOC100288202          0.027   PREDICTED: hypothetical protein XP_002342060 
NKX3-2                0.021   NK3 homeobox 2 
NLRX1                 0.021   NLR family member X1 isoform 1 
NLRX1                 0.021   NLR family member X1 isoform 2 
LOC100292688          0.016   PREDICTED: hypothetical protein 
DNLZ                  0.016   DNL-type zinc finger 
LOC100291835          0.016   PREDICTED: hypothetical protein XP_002346266 
LOC100293218          0.016   PREDICTED: similar to hCG2038990 
LOC100293082          0.011   PREDICTED: hypothetical protein 
LOC100286921          0.011   PREDICTED: hypothetical protein 
LOC100286921          0.011   PREDICTED: hypothetical protein XP_002343638 
LOC100133885          0.011   PREDICTED: hypothetical protein 
SLC9A3R2              0.011   solute carrier family 9 isoform 3 regulator 2 isofo...
SLC9A3R2              0.011   solute carrier family 9 isoform 3 regulator 2 isofor...
RTN4RL2               0.011   reticulon 4 receptor-like 2 
LOC100289281          0.005   PREDICTED: hypothetical protein 
LOC100289281          0.005   PREDICTED: hypothetical protein XP_002343069 
RBMY1A1               0.005   RNA binding motif protein, Y-linked, family 1, member...
RBMY1F                0.005   RNA binding motif protein, Y-linked, family 1, membe...
C8orf73               0.005   hypothetical protein LOC642475 
RBMY1J                0.005   RNA binding motif protein, Y-linked, family 1, membe...
KLC1                  0.005   kinesin light chain 1 isoform 2 
FAM20A                0.005   family with sequence similarity 20, member A 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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