Guide to the Human Genome
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Name: P4HA3 Sequence: fasta or formatted (544aa) NCBI GI: 33589818
Description:

prolyl 4-hydroxylase, alpha III subunit precursor

Referenced in:

Collagen

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.1         55           3
 C cysteine            1.1          6           1
 D aspartate           5.5         30           2
 E glutamate           6.8         37           2
 F phenylalanine       3.1         17           1
 G glycine             6.1         33           2
 H histidine           2.8         15           1
 I isoleucine          3.1         17           1
 K lysine              3.5         19           1
 L leucine            12.7         69           3
 M methionine          1.3          7           1
 N asparagine          3.3         18           1
 P proline             5.0         27           2
 Q glutamine           3.1         17           1
 R arginine            7.4         40           2
 S serine              7.4         40           3
 T threonine           4.2         23           2
 V valine              6.8         37           2
 W tryptophan          1.7          9           2
 Y tyrosine            5.1         28           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   prolyl 4-hydroxylase, alpha III subunit precursor [H... 
P4HA2                 0.284   prolyl 4-hydroxylase, alpha II subunit isoform 1 pr...
P4HA2                 0.284   prolyl 4-hydroxylase, alpha II subunit isoform 1 prec...
P4HA2                 0.282   prolyl 4-hydroxylase, alpha II subunit isoform 2 pr...
P4HA2                 0.282   prolyl 4-hydroxylase, alpha II subunit isoform 2 pre...
P4HA2                 0.282   prolyl 4-hydroxylase, alpha II subunit isoform 2 pre...
P4HA1                 0.279   prolyl 4-hydroxylase, alpha I subunit isoform 1 prec...
P4HA1                 0.279   prolyl 4-hydroxylase, alpha I subunit isoform 2 pre...
P4HA1                 0.279   prolyl 4-hydroxylase, alpha I subunit isoform 2 prec...
P4HA1                 0.243   prolyl 4-hydroxylase, alpha I subunit isoform 3 pre...
P4HTM                 0.040   hypoxia-inducible factor prolyl 4-hydroxylase isofor...
P4HTM                 0.023   hypoxia-inducible factor prolyl 4-hydroxylase isofor...
CRTAP                 0.016   cartilage associated protein precursor 
LEPREL1               0.014   leprecan-like 1 isoform b 
LEPREL1               0.014   leprecan-like 1 isoform a 
LEPRE1                0.011   leprecan 1 isoform 1 
LEPRE1                0.011   leprecan 1 isoform 2 
TRPM6                 0.006   transient receptor potential cation channel, subfami...
NPTXR                 0.006   neuronal pentraxin receptor 
KRT80                 0.005   keratin 80 isoform a 
KRT80                 0.005   keratin 80 isoform b 
NLGN4X                0.005   X-linked neuroligin 4 
NLGN4X                0.005   X-linked neuroligin 4 
C1orf125              0.005   hypothetical protein LOC126859 isoform 1 
C1orf125              0.005   hypothetical protein LOC126859 isoform 2 
EIF3L                 0.005   eukaryotic translation initiation factor 3 subunit 6 ...
NLGN4Y                0.005   neuroligin 4, Y-linked 
CTR9                  0.005   SH2 domain binding protein 1 
KIAA1377              0.005   hypothetical protein LOC57562 
LARP6                 0.004   La ribonucleoprotein domain family, member 6 isoform...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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