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Search of human proteins with 32698952
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|32698952 hypothetical protein LOC283598 [Homo sapiens]
(125 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|32698952 hypothetical protein LOC283598 [Homo sapiens] 267 2e-72
gi|156142182 CXXC finger 1 (PHD domain) isoform 1 [Homo sapiens] 42 2e-04
gi|156142180 CXXC finger 1 (PHD domain) isoform 2 [Homo sapiens] 42 2e-04
gi|37537687 zinc finger protein 444 [Homo sapiens] 35 0.019
gi|13376247 zinc finger protein 672 [Homo sapiens] 33 0.073
gi|19913358 Wolf-Hirschhorn syndrome candidate 1 protein isoform... 31 0.28
gi|19913350 Wolf-Hirschhorn syndrome candidate 1 protein isoform... 31 0.28
gi|19913348 Wolf-Hirschhorn syndrome candidate 1 protein isoform... 31 0.28
gi|109633019 Wolf-Hirschhorn syndrome candidate 1 protein isofor... 31 0.28
gi|226495417 coiled-coil domain containing 102A [Homo sapiens] 30 0.47
gi|89191868 von Willebrand factor preproprotein [Homo sapiens] 29 0.81
gi|63053517 keratin associated protein 10-5 [Homo sapiens] 29 0.81
gi|7706659 paired related homeobox 2 [Homo sapiens] 29 0.81
gi|221136803 zinc finger protein 776 [Homo sapiens] 28 1.4
gi|169213981 PREDICTED: similar to zinc finger protein 347 [Homo... 28 1.8
gi|169214394 PREDICTED: similar to zinc finger protein 347 [Homo... 28 1.8
gi|239746339 PREDICTED: hypothetical protein XP_002343697 [Homo ... 28 1.8
gi|104294877 zinc finger protein 229 [Homo sapiens] 28 1.8
gi|169658367 BAH domain and coiled-coil containing 1 [Homo sapiens] 28 1.8
gi|148727278 zinc finger protein 793 [Homo sapiens] 28 1.8
gi|42544157 hemojuvelin isoform c [Homo sapiens] 28 2.3
gi|44662823 hemojuvelin isoform b [Homo sapiens] 28 2.3
gi|47458050 hemojuvelin isoform c [Homo sapiens] 28 2.3
gi|47458048 hemojuvelin isoform a precursor [Homo sapiens] 28 2.3
gi|38045910 laminin alpha 3 subunit isoform 1 [Homo sapiens] 28 2.3
gi|189217425 laminin alpha 3 subunit isoform 3 [Homo sapiens] 28 2.3
gi|134031945 SCO-spondin [Homo sapiens] 28 2.3
gi|110349775 zinc finger protein 12 isoform b [Homo sapiens] 28 2.3
gi|34303941 zinc finger protein 567 [Homo sapiens] 28 2.3
gi|66348108 zinc finger protein 12 isoform a [Homo sapiens] 28 2.3
>gi|32698952 hypothetical protein LOC283598 [Homo sapiens]
Length = 125
Score = 267 bits (682), Expect = 2e-72
Identities = 125/125 (100%), Positives = 125/125 (100%)
Query: 1 MHWKEPGARLEATRGAARPHKQGTKPMITRPSVSQLGEGKCPSSQHLQSLRHNKQHALTL 60
MHWKEPGARLEATRGAARPHKQGTKPMITRPSVSQLGEGKCPSSQHLQSLRHNKQHALTL
Sbjct: 1 MHWKEPGARLEATRGAARPHKQGTKPMITRPSVSQLGEGKCPSSQHLQSLRHNKQHALTL 60
Query: 61 TKARCCGECSTCFCTEEKSECQRHEETSPGSCNHQIMSASTISAFCATPRFKQLFKGTVE 120
TKARCCGECSTCFCTEEKSECQRHEETSPGSCNHQIMSASTISAFCATPRFKQLFKGTVE
Sbjct: 61 TKARCCGECSTCFCTEEKSECQRHEETSPGSCNHQIMSASTISAFCATPRFKQLFKGTVE 120
Query: 121 QMSQM 125
QMSQM
Sbjct: 121 QMSQM 125
>gi|156142182 CXXC finger 1 (PHD domain) isoform 1 [Homo sapiens]
Length = 660
Score = 41.6 bits (96), Expect = 2e-04
Identities = 23/68 (33%), Positives = 29/68 (42%), Gaps = 17/68 (25%)
Query: 14 RGAARPHKQGTKPMITRPSVSQLGEGKCPSSQHLQSLRHNKQHALTLTKARCCGECSTCF 73
RG+A PHK +P++ PS QH H +Q AR CGEC C
Sbjct: 134 RGSASPHKSSPQPLVATPS------------QH-----HQQQQQQIKRSARMCGECEACR 176
Query: 74 CTEEKSEC 81
TE+ C
Sbjct: 177 RTEDCGHC 184
>gi|156142180 CXXC finger 1 (PHD domain) isoform 2 [Homo sapiens]
Length = 656
Score = 41.6 bits (96), Expect = 2e-04
Identities = 23/68 (33%), Positives = 29/68 (42%), Gaps = 17/68 (25%)
Query: 14 RGAARPHKQGTKPMITRPSVSQLGEGKCPSSQHLQSLRHNKQHALTLTKARCCGECSTCF 73
RG+A PHK +P++ PS QH H +Q AR CGEC C
Sbjct: 134 RGSASPHKSSPQPLVATPS------------QH-----HQQQQQQIKRSARMCGECEACR 176
Query: 74 CTEEKSEC 81
TE+ C
Sbjct: 177 RTEDCGHC 184
>gi|37537687 zinc finger protein 444 [Homo sapiens]
Length = 327
Score = 34.7 bits (78), Expect = 0.019
Identities = 25/85 (29%), Positives = 33/85 (38%), Gaps = 13/85 (15%)
Query: 16 AARPHKQ---------GTKPMITRPSVSQLGEGKCPSSQHLQSLRHNKQHALTLTKARCC 66
A RP+KQ G + P + E S + LRH + H+ K C
Sbjct: 152 AVRPYKQEPSSPPLAPGLPAFLAAPGTTSCPECGKTSLKPAHLLRHRQSHSGE--KPHAC 209
Query: 67 GECSTCFCTEEKSECQRHEETSPGS 91
EC F K +RH +T PGS
Sbjct: 210 PECGKAF--RRKEHLRRHRDTHPGS 232
>gi|13376247 zinc finger protein 672 [Homo sapiens]
Length = 452
Score = 32.7 bits (73), Expect = 0.073
Identities = 29/106 (27%), Positives = 38/106 (35%), Gaps = 23/106 (21%)
Query: 8 ARLEATRGAARPHKQ------------GTKPMITRPSVSQLGEG--KCPSS-----QHLQ 48
AR+ +R RP G +TR + GE KCP +
Sbjct: 182 ARIHVSRSPTRPRVSDAHQCGVCGKCFGKSSTLTRHLQTHSGEKPFKCPECGKGFLESAT 241
Query: 49 SLRHNKQHALTLTKARCCGECSTCFCTEEKSECQRHEETSPGSCNH 94
+RH + H T K CG+C CF E S RH + G H
Sbjct: 242 LVRHQRTH--TGEKPYACGDCGRCF--SESSTLLRHRRSHQGERPH 283
>gi|19913358 Wolf-Hirschhorn syndrome candidate 1 protein isoform 1
[Homo sapiens]
Length = 1365
Score = 30.8 bits (68), Expect = 0.28
Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
Query: 30 RPSVSQLGEGKCPSSQHLQSLRHNKQHALTLTKARCCGECSTCF-CTEEKSECQRHEETS 88
+P L EG C + HL L +++ T + C +CF C E K++ +R T
Sbjct: 675 KPGSLLLCEGPCCGAFHLACLGLSRRPEGRFTCSECASGIHSCFVCKESKTDVKRCVVTQ 734
Query: 89 PGSCNHQ 95
G H+
Sbjct: 735 CGKFYHE 741
>gi|19913350 Wolf-Hirschhorn syndrome candidate 1 protein isoform 1
[Homo sapiens]
Length = 1365
Score = 30.8 bits (68), Expect = 0.28
Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
Query: 30 RPSVSQLGEGKCPSSQHLQSLRHNKQHALTLTKARCCGECSTCF-CTEEKSECQRHEETS 88
+P L EG C + HL L +++ T + C +CF C E K++ +R T
Sbjct: 675 KPGSLLLCEGPCCGAFHLACLGLSRRPEGRFTCSECASGIHSCFVCKESKTDVKRCVVTQ 734
Query: 89 PGSCNHQ 95
G H+
Sbjct: 735 CGKFYHE 741
>gi|19913348 Wolf-Hirschhorn syndrome candidate 1 protein isoform 1
[Homo sapiens]
Length = 1365
Score = 30.8 bits (68), Expect = 0.28
Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
Query: 30 RPSVSQLGEGKCPSSQHLQSLRHNKQHALTLTKARCCGECSTCF-CTEEKSECQRHEETS 88
+P L EG C + HL L +++ T + C +CF C E K++ +R T
Sbjct: 675 KPGSLLLCEGPCCGAFHLACLGLSRRPEGRFTCSECASGIHSCFVCKESKTDVKRCVVTQ 734
Query: 89 PGSCNHQ 95
G H+
Sbjct: 735 CGKFYHE 741
>gi|109633019 Wolf-Hirschhorn syndrome candidate 1 protein isoform 1
[Homo sapiens]
Length = 1365
Score = 30.8 bits (68), Expect = 0.28
Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
Query: 30 RPSVSQLGEGKCPSSQHLQSLRHNKQHALTLTKARCCGECSTCF-CTEEKSECQRHEETS 88
+P L EG C + HL L +++ T + C +CF C E K++ +R T
Sbjct: 675 KPGSLLLCEGPCCGAFHLACLGLSRRPEGRFTCSECASGIHSCFVCKESKTDVKRCVVTQ 734
Query: 89 PGSCNHQ 95
G H+
Sbjct: 735 CGKFYHE 741
>gi|226495417 coiled-coil domain containing 102A [Homo sapiens]
Length = 550
Score = 30.0 bits (66), Expect = 0.47
Identities = 15/41 (36%), Positives = 20/41 (48%)
Query: 8 ARLEATRGAARPHKQGTKPMITRPSVSQLGEGKCPSSQHLQ 48
ARL RG A + G +P R V +G + P SQ L+
Sbjct: 158 ARLRGARGVADQTRDGPEPEAEREPVRDVGSERPPGSQELE 198
>gi|89191868 von Willebrand factor preproprotein [Homo sapiens]
Length = 2813
Score = 29.3 bits (64), Expect = 0.81
Identities = 17/62 (27%), Positives = 25/62 (40%), Gaps = 5/62 (8%)
Query: 31 PSVSQLGEGKCPSSQHLQSLRHNKQHALTLTKARCCGECSTCFCTEEKSECQRHEETSPG 90
P L EG C S + K++ + +R +C+TC C + C E PG
Sbjct: 332 PEGQLLDEGLCVESTECPCVHSGKRYPPGTSLSR---DCNTCICRNSQWICSNEE--CPG 386
Query: 91 SC 92
C
Sbjct: 387 EC 388
>gi|63053517 keratin associated protein 10-5 [Homo sapiens]
Length = 271
Score = 29.3 bits (64), Expect = 0.81
Identities = 19/86 (22%), Positives = 28/86 (32%), Gaps = 1/86 (1%)
Query: 25 KPMITRPSVSQLGEGKCPSSQHLQSLRHNKQHALTLTKARCCGE-CSTCFCTEEKSECQR 83
KP+ P+ S+ C S + + + CC C C+E+ S C +
Sbjct: 95 KPVCCLPTCSKDSSSCCQQSSCQPTCCASSSCQQSCCVPVCCKPVCCVPTCSEDSSSCCQ 154
Query: 84 HEETSPGSCNHQIMSASTISAFCATP 109
H P C S C P
Sbjct: 155 HSSCQPTCCTSSPCQQSCYVPVCCKP 180
>gi|7706659 paired related homeobox 2 [Homo sapiens]
Length = 253
Score = 29.3 bits (64), Expect = 0.81
Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 5/50 (10%)
Query: 6 PGARLEATRGAARPHKQGTKPMITRPSVSQLGEGKCPSSQHLQSLRHNKQ 55
PGAR EA GAAR G+ P +G+CPS + + K+
Sbjct: 59 PGARAEAREGAAREPSGGSSGSEAAPQ-----DGECPSPGRGSAAKRKKK 103
>gi|221136803 zinc finger protein 776 [Homo sapiens]
Length = 518
Score = 28.5 bits (62), Expect = 1.4
Identities = 16/59 (27%), Positives = 27/59 (45%), Gaps = 6/59 (10%)
Query: 39 GKCPSSQHLQS--LRHNKQHALTLTKARCCGECSTCFCTEEKSECQRHEETSPGSCNHQ 95
G+C H + +RH + H+ + CGEC CF +K +H+ G +H+
Sbjct: 463 GECGKCFHQKGSLIRHQQIHSGE--RPHECGECGKCF--RQKGNLIKHQRVHTGERHHE 517
Score = 26.9 bits (58), Expect = 4.0
Identities = 11/30 (36%), Positives = 15/30 (50%), Gaps = 2/30 (6%)
Query: 66 CGECSTCFCTEEKSECQRHEETSPGSCNHQ 95
CGEC CF +K RH++ G H+
Sbjct: 462 CGECGKCF--HQKGSLIRHQQIHSGERPHE 489
>gi|169213981 PREDICTED: similar to zinc finger protein 347 [Homo
sapiens]
Length = 561
Score = 28.1 bits (61), Expect = 1.8
Identities = 20/54 (37%), Positives = 23/54 (42%), Gaps = 6/54 (11%)
Query: 39 GKCPS--SQHLQSLRHNKQHALTLTKARCCGECSTCFCTEEKSECQRHEETSPG 90
G+C SQ RH K H T K CGEC FC S +H+ T G
Sbjct: 176 GQCGKFYSQVSHLTRHQKIH--TGEKPYQCGECGKAFC--HTSSLTQHQTTHTG 225
>gi|169214394 PREDICTED: similar to zinc finger protein 347 [Homo
sapiens]
Length = 561
Score = 28.1 bits (61), Expect = 1.8
Identities = 20/54 (37%), Positives = 23/54 (42%), Gaps = 6/54 (11%)
Query: 39 GKCPS--SQHLQSLRHNKQHALTLTKARCCGECSTCFCTEEKSECQRHEETSPG 90
G+C SQ RH K H T K CGEC FC S +H+ T G
Sbjct: 176 GQCGKFYSQVSHLTRHQKIH--TGEKPYQCGECGKAFC--HTSSLTQHQTTHTG 225
>gi|239746339 PREDICTED: hypothetical protein XP_002343697 [Homo
sapiens]
Length = 561
Score = 28.1 bits (61), Expect = 1.8
Identities = 20/54 (37%), Positives = 23/54 (42%), Gaps = 6/54 (11%)
Query: 39 GKCPS--SQHLQSLRHNKQHALTLTKARCCGECSTCFCTEEKSECQRHEETSPG 90
G+C SQ RH K H T K CGEC FC S +H+ T G
Sbjct: 176 GQCGKFYSQVSHLTRHQKIH--TGEKPYQCGECGKAFC--HTSSLTQHQTTHTG 225
>gi|104294877 zinc finger protein 229 [Homo sapiens]
Length = 825
Score = 28.1 bits (61), Expect = 1.8
Identities = 23/73 (31%), Positives = 30/73 (41%), Gaps = 11/73 (15%)
Query: 23 GTKPMITRPSVSQLGEGKCPSSQHLQSLRHNKQHALTLTKARCCGECSTCF-CTEEKSEC 81
G KP + S+ G+G C +S H QH K CGEC F C+ S
Sbjct: 429 GEKPY----TCSECGKGFCA-----KSALHKHQHIHPGEKPYSCGECGKGFSCSSHLSSH 479
Query: 82 QR-HEETSPGSCN 93
Q+ H P C+
Sbjct: 480 QKTHTGERPYQCD 492
Score = 25.8 bits (55), Expect = 8.9
Identities = 14/39 (35%), Positives = 17/39 (43%), Gaps = 4/39 (10%)
Query: 52 HNKQHALTLTKARCCGECSTCFCTEEKSECQRHEETSPG 90
H + H T K C EC FC KS +H+ PG
Sbjct: 423 HQRLH--TGEKPYTCSECGKGFCA--KSALHKHQHIHPG 457
>gi|169658367 BAH domain and coiled-coil containing 1 [Homo sapiens]
Length = 2608
Score = 28.1 bits (61), Expect = 1.8
Identities = 18/58 (31%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
Query: 8 ARLEATRG-AARPHKQGTKPMITRPSVSQLGEGKCPSSQHLQSLRHNKQHALTLTKAR 64
A+ EA R + PH + ++R +V+ G G PSS L+ ++ AL+ +KA+
Sbjct: 2371 AQPEALRSKGSGPHAHAQRCFLSRATVAGTGAGSGPSSSSKSKLK--RKEALSFSKAK 2426
>gi|148727278 zinc finger protein 793 [Homo sapiens]
Length = 406
Score = 28.1 bits (61), Expect = 1.8
Identities = 24/91 (26%), Positives = 36/91 (39%), Gaps = 19/91 (20%)
Query: 2 HWKEPGARLEATRGAARPHKQGTK--PMITRPSVSQLGEGKCPSSQHLQSLRHNKQHALT 59
H + P E RG + K T+ ++ +P+VS SL + ++
Sbjct: 178 HGRRPNG--EKPRGCSHCEKAFTQNPALMYKPAVSD-------------SLLYKRKRVPP 222
Query: 60 LTKARCCGECSTCFCTEEKSECQRHEETSPG 90
K C EC FC KSE RH+ + G
Sbjct: 223 TEKPHVCSECGKAFC--YKSEFIRHQRSHTG 251
>gi|42544157 hemojuvelin isoform c [Homo sapiens]
Length = 200
Score = 27.7 bits (60), Expect = 2.3
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 35 QLGEGKCPSSQHLQSLRHNKQHALTLTKAR 64
QL G CP SQ L N++ A+T+ AR
Sbjct: 89 QLCVGGCPPSQRLSRSERNRRGAITIDTAR 118
>gi|44662823 hemojuvelin isoform b [Homo sapiens]
Length = 313
Score = 27.7 bits (60), Expect = 2.3
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 35 QLGEGKCPSSQHLQSLRHNKQHALTLTKAR 64
QL G CP SQ L N++ A+T+ AR
Sbjct: 202 QLCVGGCPPSQRLSRSERNRRGAITIDTAR 231
>gi|47458050 hemojuvelin isoform c [Homo sapiens]
Length = 200
Score = 27.7 bits (60), Expect = 2.3
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 35 QLGEGKCPSSQHLQSLRHNKQHALTLTKAR 64
QL G CP SQ L N++ A+T+ AR
Sbjct: 89 QLCVGGCPPSQRLSRSERNRRGAITIDTAR 118
>gi|47458048 hemojuvelin isoform a precursor [Homo sapiens]
Length = 426
Score = 27.7 bits (60), Expect = 2.3
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 35 QLGEGKCPSSQHLQSLRHNKQHALTLTKAR 64
QL G CP SQ L N++ A+T+ AR
Sbjct: 315 QLCVGGCPPSQRLSRSERNRRGAITIDTAR 344
>gi|38045910 laminin alpha 3 subunit isoform 1 [Homo sapiens]
Length = 3333
Score = 27.7 bits (60), Expect = 2.3
Identities = 15/55 (27%), Positives = 26/55 (47%), Gaps = 3/55 (5%)
Query: 29 TRPSVSQLGEGKCPSSQHLQSLRHN--KQHALTLTKARCCGECSTCFCTEEKSEC 81
T P V G G C ++++ N ++ + L A G C++CFC ++C
Sbjct: 1412 TEPGVCDPGTGACLCKENVEGTECNVCREGSFHLDPANLKG-CTSCFCFGVNNQC 1465
>gi|189217425 laminin alpha 3 subunit isoform 3 [Homo sapiens]
Length = 3277
Score = 27.7 bits (60), Expect = 2.3
Identities = 15/55 (27%), Positives = 26/55 (47%), Gaps = 3/55 (5%)
Query: 29 TRPSVSQLGEGKCPSSQHLQSLRHN--KQHALTLTKARCCGECSTCFCTEEKSEC 81
T P V G G C ++++ N ++ + L A G C++CFC ++C
Sbjct: 1412 TEPGVCDPGTGACLCKENVEGTECNVCREGSFHLDPANLKG-CTSCFCFGVNNQC 1465
>gi|134031945 SCO-spondin [Homo sapiens]
Length = 5147
Score = 27.7 bits (60), Expect = 2.3
Identities = 23/92 (25%), Positives = 34/92 (36%), Gaps = 4/92 (4%)
Query: 18 RPHKQGTKPMITRPSVSQLGEGKCPSSQHLQSLRHNKQHALTLTKARCCGECSTCFCTEE 77
RPH G++ S L G+ +QH L + + L CC C E+
Sbjct: 4991 RPHLPGSEWQEACESCLCLS-GRPVCTQHCSPLTCAQGEEMVLEPGSCCPSCRREAPEEQ 5049
Query: 78 KSECQRHEET---SPGSCNHQIMSASTISAFC 106
CQ E + G+C + S S +C
Sbjct: 5050 SPSCQLLTELRNFTKGTCYLDQVEVSYCSGYC 5081
>gi|110349775 zinc finger protein 12 isoform b [Homo sapiens]
Length = 659
Score = 27.7 bits (60), Expect = 2.3
Identities = 15/44 (34%), Positives = 18/44 (40%), Gaps = 4/44 (9%)
Query: 52 HNKQHALTLTKARCCGECSTCFCTEE--KSECQRHEETSPGSCN 93
H K H T K C EC CFC + + + H P CN
Sbjct: 361 HQKIH--TGVKLYKCSECGKCFCRKSTLTTHLRTHTGEKPYECN 402
>gi|34303941 zinc finger protein 567 [Homo sapiens]
Length = 616
Score = 27.7 bits (60), Expect = 2.3
Identities = 16/53 (30%), Positives = 23/53 (43%), Gaps = 3/53 (5%)
Query: 49 SLRHNKQHALTLTKARCCGECSTCFCTEEKSECQR--HEETSPGSCNHQIMSA 99
S+ + K+ A + K C EC FC + + H E P C HQ +A
Sbjct: 207 SVYNKKRRATNIEKKHTCNECGKSFCRKSVLILHQGIHSEEKPYQC-HQCGNA 258
>gi|66348108 zinc finger protein 12 isoform a [Homo sapiens]
Length = 697
Score = 27.7 bits (60), Expect = 2.3
Identities = 15/44 (34%), Positives = 18/44 (40%), Gaps = 4/44 (9%)
Query: 52 HNKQHALTLTKARCCGECSTCFCTEE--KSECQRHEETSPGSCN 93
H K H T K C EC CFC + + + H P CN
Sbjct: 399 HQKIH--TGVKLYKCSECGKCFCRKSTLTTHLRTHTGEKPYECN 440
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.126 0.397
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,430,572
Number of Sequences: 37866
Number of extensions: 230745
Number of successful extensions: 1015
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 44
Number of HSP's that attempted gapping in prelim test: 969
Number of HSP's gapped (non-prelim): 93
length of query: 125
length of database: 18,247,518
effective HSP length: 90
effective length of query: 35
effective length of database: 14,839,578
effective search space: 519385230
effective search space used: 519385230
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.