Guide to the Human Genome
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Name: C14orf177 Sequence: fasta or formatted (125aa) NCBI GI: 32698952
Description:

hypothetical protein LOC283598

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.2          9           2
 C cysteine            7.2          9           2
 D aspartate           0.0          0           0
 E glutamate           8.0         10           2
 F phenylalanine       3.2          4           1
 G glycine             6.4          8           1
 H histidine           5.6          7           1
 I isoleucine          2.4          3           1
 K lysine              7.2          9           1
 L leucine             5.6          7           1
 M methionine          4.0          5           1
 N asparagine          1.6          2           1
 P proline             5.6          7           1
 Q glutamine           8.0         10           1
 R arginine            6.4          8           1
 S serine             10.4         13           2
 T threonine           8.8         11           1
 V valine              1.6          2           1
 W tryptophan          0.8          1           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC283598 
CXXC1                 0.070   CXXC finger 1 (PHD domain) isoform 1 
CXXC1                 0.070   CXXC finger 1 (PHD domain) isoform 2 
ZNF444                0.041   zinc finger protein 444 
ZNF672                0.033   zinc finger protein 672 
WHSC1                 0.025   Wolf-Hirschhorn syndrome candidate 1 protein isoform...
WHSC1                 0.025   Wolf-Hirschhorn syndrome candidate 1 protein isoform...
WHSC1                 0.025   Wolf-Hirschhorn syndrome candidate 1 protein isoform...
WHSC1                 0.025   Wolf-Hirschhorn syndrome candidate 1 protein isofor...
CCDC102A              0.021   coiled-coil domain containing 102A 
VWF                   0.017   von Willebrand factor preproprotein 
KRTAP10-5             0.017   keratin associated protein 10-5 
PRRX2                 0.017   paired related homeobox 2 
ZNF776                0.012   zinc finger protein 776 
LOC647678             0.012   PREDICTED: similar to zinc finger protein 347 [Homo...
LOC647678             0.012   PREDICTED: similar to zinc finger protein 347 [Homo...
LOC100287477          0.012   PREDICTED: hypothetical protein XP_002343697 
ZNF229                0.012   zinc finger protein 229 
BAHCC1                0.012   BAH domain and coiled-coil containing 1 
ZNF793                0.012   zinc finger protein 793 
HFE2                  0.012   hemojuvelin isoform c 
HFE2                  0.012   hemojuvelin isoform b 
HFE2                  0.012   hemojuvelin isoform c 
HFE2                  0.012   hemojuvelin isoform a precursor 
LAMA3                 0.012   laminin alpha 3 subunit isoform 1 
LAMA3                 0.012   laminin alpha 3 subunit isoform 3 
SSPO                  0.012   SCO-spondin 
ZNF12                 0.012   zinc finger protein 12 isoform b 
ZNF567                0.012   zinc finger protein 567 
ZNF12                 0.012   zinc finger protein 12 isoform a 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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