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Search of human proteins with 32469515
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|32469515 nudix-type motif 8 [Homo sapiens]
(140 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|32469515 nudix-type motif 8 [Homo sapiens] 285 9e-78
gi|157785656 nudix motif 7 [Homo sapiens] 62 2e-10
gi|51317351 RNA binding motif, single stranded interacting prote... 32 0.13
gi|24308370 nudix-type motif 16 [Homo sapiens] 30 0.49
gi|110825988 TAR RNA binding protein 1 [Homo sapiens] 30 0.84
gi|39995071 exonuclease 1 isoform b [Homo sapiens] 29 1.1
gi|39995069 exonuclease 1 isoform a [Homo sapiens] 29 1.1
gi|18491016 exonuclease 1 isoform b [Homo sapiens] 29 1.1
gi|37594461 nudix-type motif 6 isoform b [Homo sapiens] 28 1.9
gi|20149583 nudix-type motif 6 isoform a [Homo sapiens] 28 1.9
gi|22219467 nudix-type motif 2 [Homo sapiens] 28 2.5
gi|22219465 nudix-type motif 2 [Homo sapiens] 28 2.5
gi|4502125 nudix-type motif 2 [Homo sapiens] 28 2.5
gi|38016930 2'-5'-oligoadenylate synthetase-like isoform b [Homo... 28 3.2
gi|11321577 2'-5'-oligoadenylate synthetase-like isoform a [Homo... 28 3.2
gi|223633890 hypothetical protein LOC729956 [Homo sapiens] 27 4.2
gi|166795285 coenzyme Q4 homolog [Homo sapiens] 27 4.2
gi|239748777 PREDICTED: hypothetical protein [Homo sapiens] 27 4.2
gi|92859618 sphingomyelin phosphodiesterase 2, neutral [Homo sap... 27 4.2
gi|163914392 glioma tumor suppressor candidate region gene 1 [Ho... 27 5.5
gi|41393549 nudix-type motif 10 [Homo sapiens] 27 7.1
gi|33667063 transmembrane protease, serine 9 [Homo sapiens] 27 7.1
gi|126012571 heparan sulfate proteoglycan 2 [Homo sapiens] 26 9.3
gi|169167201 PREDICTED: hypothetical protein [Homo sapiens] 26 9.3
>gi|32469515 nudix-type motif 8 [Homo sapiens]
Length = 140
Score = 285 bits (729), Expect = 9e-78
Identities = 140/140 (100%), Positives = 140/140 (100%)
Query: 1 MLPDCLSAEGELRCRRLLAGATARLRARPASAAVLVPLCSVRGVPALLYTLRSSRLTGRH 60
MLPDCLSAEGELRCRRLLAGATARLRARPASAAVLVPLCSVRGVPALLYTLRSSRLTGRH
Sbjct: 1 MLPDCLSAEGELRCRRLLAGATARLRARPASAAVLVPLCSVRGVPALLYTLRSSRLTGRH 60
Query: 61 KGDVSFPGGKCDPADQDVVHTALRETREELGLAVPEEHVWGLLRPVYDPQKATVVPVLAG 120
KGDVSFPGGKCDPADQDVVHTALRETREELGLAVPEEHVWGLLRPVYDPQKATVVPVLAG
Sbjct: 61 KGDVSFPGGKCDPADQDVVHTALRETREELGLAVPEEHVWGLLRPVYDPQKATVVPVLAG 120
Query: 121 VGPLDPQSLRPNSEEVSWGI 140
VGPLDPQSLRPNSEEVSWGI
Sbjct: 121 VGPLDPQSLRPNSEEVSWGI 140
>gi|157785656 nudix motif 7 [Homo sapiens]
Length = 238
Score = 62.0 bits (149), Expect = 2e-10
Identities = 43/105 (40%), Positives = 56/105 (53%), Gaps = 5/105 (4%)
Query: 33 AVLVPLCSVRGVPALLYTLRSSRLTGRHKGDVSFPGGKCDPADQDVVHTALRETREELGL 92
+VL+PL + G LL+T+RS +L R G+V FPGGK DP D D TALRE +EE+GL
Sbjct: 41 SVLLPLVAKEGKLHLLFTVRSEKLR-RAPGEVCFPGGKRDPTDMDDAATALREAQEEVGL 99
Query: 93 AVPEEHVWGLLRPVYDPQKATVVPVLAGVGPLDPQ-SLRPNSEEV 136
+ V L P + P VG +D +PN EV
Sbjct: 100 RPHQVEVVCCLVPCLIDTDTLITPF---VGLIDHNFQAQPNPAEV 141
>gi|51317351 RNA binding motif, single stranded interacting protein
3 isoform 2 [Homo sapiens]
Length = 420
Score = 32.3 bits (72), Expect = 0.13
Identities = 20/71 (28%), Positives = 30/71 (42%), Gaps = 3/71 (4%)
Query: 67 PGGKCDPADQDVVHTALRETREELGLAVPEEHVWGLLRPVYDPQKATVVPVLAGVGPLDP 126
P P Q + H +L T + A P + G P Y P T V + V P
Sbjct: 329 PANMMGPLTQQMNHLSLGTTGTYMTAAAPMQ---GTYIPQYTPVPPTAVSIEGVVADTSP 385
Query: 127 QSLRPNSEEVS 137
Q++ P+S++ S
Sbjct: 386 QTVAPSSQDTS 396
>gi|24308370 nudix-type motif 16 [Homo sapiens]
Length = 162
Score = 30.4 bits (67), Expect = 0.49
Identities = 16/35 (45%), Positives = 19/35 (54%)
Query: 59 RHKGDVSFPGGKCDPADQDVVHTALRETREELGLA 93
R G + FPGG D D+ + RE REELG A
Sbjct: 17 RFDGRLGFPGGFVDTQDRSLEDGLNRELREELGEA 51
>gi|110825988 TAR RNA binding protein 1 [Homo sapiens]
Length = 1621
Score = 29.6 bits (65), Expect = 0.84
Identities = 40/113 (35%), Positives = 49/113 (43%), Gaps = 11/113 (9%)
Query: 27 ARPASAAVLVPLC-SVRGVPALLYTLRSSRLTGRHKGDVSFPGGKCDPADQDVVHTALRE 85
AR +A LVPL S+RG PA L RH+ V G A + V A
Sbjct: 61 AREVAAGYLVPLLRSLRGRPA---GGPDPSLQPRHRRRVLRAAGA---ALRSCVRLA--- 111
Query: 86 TREELGLAVPEEHVWGLLRPVYDPQKATVVPVLAGVGP-LDPQSLRPNSEEVS 137
R +L A+ EE + LL P V VLA VGP L P+ P E V+
Sbjct: 112 GRPQLAAALAEEALRDLLAGWRAPGAEAAVEVLAAVGPCLRPREDGPLLERVA 164
>gi|39995071 exonuclease 1 isoform b [Homo sapiens]
Length = 846
Score = 29.3 bits (64), Expect = 1.1
Identities = 14/49 (28%), Positives = 28/49 (57%), Gaps = 8/49 (16%)
Query: 89 ELGLAVPEEHVWGLLRP--------VYDPQKATVVPVLAGVGPLDPQSL 129
++ + VPE+++ G +R V+DP K ++P+ A +DP++L
Sbjct: 262 KMNITVPEDYINGFIRANNTFLYQLVFDPIKRKLIPLNAYEDDVDPETL 310
>gi|39995069 exonuclease 1 isoform a [Homo sapiens]
Length = 803
Score = 29.3 bits (64), Expect = 1.1
Identities = 14/49 (28%), Positives = 28/49 (57%), Gaps = 8/49 (16%)
Query: 89 ELGLAVPEEHVWGLLRP--------VYDPQKATVVPVLAGVGPLDPQSL 129
++ + VPE+++ G +R V+DP K ++P+ A +DP++L
Sbjct: 262 KMNITVPEDYINGFIRANNTFLYQLVFDPIKRKLIPLNAYEDDVDPETL 310
>gi|18491016 exonuclease 1 isoform b [Homo sapiens]
Length = 846
Score = 29.3 bits (64), Expect = 1.1
Identities = 14/49 (28%), Positives = 28/49 (57%), Gaps = 8/49 (16%)
Query: 89 ELGLAVPEEHVWGLLRP--------VYDPQKATVVPVLAGVGPLDPQSL 129
++ + VPE+++ G +R V+DP K ++P+ A +DP++L
Sbjct: 262 KMNITVPEDYINGFIRANNTFLYQLVFDPIKRKLIPLNAYEDDVDPETL 310
>gi|37594461 nudix-type motif 6 isoform b [Homo sapiens]
Length = 147
Score = 28.5 bits (62), Expect = 1.9
Identities = 13/27 (48%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
Query: 66 FPGGKCDPADQDVVHTALRETREELGL 92
FPGG +P ++D+ TA+RE EE G+
Sbjct: 4 FPGGLSEP-EEDIGDTAVREVFEETGI 29
>gi|20149583 nudix-type motif 6 isoform a [Homo sapiens]
Length = 316
Score = 28.5 bits (62), Expect = 1.9
Identities = 13/27 (48%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
Query: 66 FPGGKCDPADQDVVHTALRETREELGL 92
FPGG +P ++D+ TA+RE EE G+
Sbjct: 173 FPGGLSEP-EEDIGDTAVREVFEETGI 198
>gi|22219467 nudix-type motif 2 [Homo sapiens]
Length = 147
Score = 28.1 bits (61), Expect = 2.5
Identities = 13/26 (50%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
Query: 67 PGGKCDPADQDVVHTALRETREELGL 92
P G +P + D+ TALRET+EE G+
Sbjct: 41 PKGHVEPGEDDL-ETALRETQEEAGI 65
>gi|22219465 nudix-type motif 2 [Homo sapiens]
Length = 147
Score = 28.1 bits (61), Expect = 2.5
Identities = 13/26 (50%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
Query: 67 PGGKCDPADQDVVHTALRETREELGL 92
P G +P + D+ TALRET+EE G+
Sbjct: 41 PKGHVEPGEDDL-ETALRETQEEAGI 65
>gi|4502125 nudix-type motif 2 [Homo sapiens]
Length = 147
Score = 28.1 bits (61), Expect = 2.5
Identities = 13/26 (50%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
Query: 67 PGGKCDPADQDVVHTALRETREELGL 92
P G +P + D+ TALRET+EE G+
Sbjct: 41 PKGHVEPGEDDL-ETALRETQEEAGI 65
>gi|38016930 2'-5'-oligoadenylate synthetase-like isoform b [Homo
sapiens]
Length = 255
Score = 27.7 bits (60), Expect = 3.2
Identities = 27/93 (29%), Positives = 38/93 (40%), Gaps = 3/93 (3%)
Query: 46 ALLYTLRSSRLTGRHKGDVSFPGGKCDPADQDVVHTALRETREELGLAVPEEHVWGL-LR 104
A L S + +H DV K QD++ L + R E VP+ V+ + R
Sbjct: 86 AFLSCFHSFQEAAKHHKDVLRLIWKTMWQSQDLLDLGLEDLRMEQ--RVPDALVFTIQTR 143
Query: 105 PVYDPQKATVVPVLAGVGPLDPQSLRPNSEEVS 137
+P T+VP +GP P S P VS
Sbjct: 144 GTAEPITVTIVPAYRALGPSLPNSQPPPEVYVS 176
>gi|11321577 2'-5'-oligoadenylate synthetase-like isoform a [Homo
sapiens]
Length = 514
Score = 27.7 bits (60), Expect = 3.2
Identities = 27/93 (29%), Positives = 38/93 (40%), Gaps = 3/93 (3%)
Query: 46 ALLYTLRSSRLTGRHKGDVSFPGGKCDPADQDVVHTALRETREELGLAVPEEHVWGL-LR 104
A L S + +H DV K QD++ L + R E VP+ V+ + R
Sbjct: 86 AFLSCFHSFQEAAKHHKDVLRLIWKTMWQSQDLLDLGLEDLRMEQ--RVPDALVFTIQTR 143
Query: 105 PVYDPQKATVVPVLAGVGPLDPQSLRPNSEEVS 137
+P T+VP +GP P S P VS
Sbjct: 144 GTAEPITVTIVPAYRALGPSLPNSQPPPEVYVS 176
>gi|223633890 hypothetical protein LOC729956 [Homo sapiens]
Length = 538
Score = 27.3 bits (59), Expect = 4.2
Identities = 23/57 (40%), Positives = 28/57 (49%), Gaps = 9/57 (15%)
Query: 17 LLAGATARLRARPASAAVLVPLCSVRGVPALLYTLRSSRLTGRHKGDVSFPGGKCDP 73
LLA + + RARP++A P +PALL LR RLTG G GG P
Sbjct: 9 LLASSAGQARARPSNATSAEP---AGPLPALLAHLR--RLTGALTGG----GGAASP 56
>gi|166795285 coenzyme Q4 homolog [Homo sapiens]
Length = 265
Score = 27.3 bits (59), Expect = 4.2
Identities = 12/21 (57%), Positives = 14/21 (66%)
Query: 82 ALRETREELGLAVPEEHVWGL 102
+LR REELG+ P HV GL
Sbjct: 244 SLRALREELGITAPPMHVQGL 264
>gi|239748777 PREDICTED: hypothetical protein [Homo sapiens]
Length = 350
Score = 27.3 bits (59), Expect = 4.2
Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 5/56 (8%)
Query: 19 AGATARLRARPASAAVLVPLCSVRGVPALLYTLRSSRL----TGRHKGDVSFPGGK 70
A +RLRA PA+A L+P + G PA L SRL H + + P G+
Sbjct: 64 AAVHSRLRAAPAAAPRLLPRV-LAGAPARTGALAGSRLRAAAAAAHDQEAAAPTGR 118
>gi|92859618 sphingomyelin phosphodiesterase 2, neutral [Homo
sapiens]
Length = 423
Score = 27.3 bits (59), Expect = 4.2
Identities = 16/59 (27%), Positives = 24/59 (40%)
Query: 42 RGVPALLYTLRSSRLTGRHKGDVSFPGGKCDPADQDVVHTALRETREELGLAVPEEHVW 100
RG P + + L RH P PA++ + L+E ELGL + + W
Sbjct: 265 RGTPLSDHEALMATLFVRHSPPQQNPSSTHGPAERSPLMCVLKEAWTELGLGMAQARWW 323
>gi|163914392 glioma tumor suppressor candidate region gene 1 [Homo
sapiens]
Length = 1560
Score = 26.9 bits (58), Expect = 5.5
Identities = 15/37 (40%), Positives = 18/37 (48%)
Query: 92 LAVPEEHVWGLLRPVYDPQKATVVPVLAGVGPLDPQS 128
L+VP + P DP AT V AG+GP P S
Sbjct: 716 LSVPASVIVSAPPPAQDPAPATPVAKGAGLGPQAPDS 752
>gi|41393549 nudix-type motif 10 [Homo sapiens]
Length = 164
Score = 26.6 bits (57), Expect = 7.1
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 67 PGGKCDPADQDVVHTALRETREELGLAVPEEHVWGLLRPVYDPQKATVVPVL 118
PGG +P +++ A+RE EE G+ + G+ DP+ T V VL
Sbjct: 48 PGGGMEP-EEEPGGAAVREVYEEAGVKGKLGRLLGVFEQNQDPKHRTYVYVL 98
>gi|33667063 transmembrane protease, serine 9 [Homo sapiens]
Length = 1059
Score = 26.6 bits (57), Expect = 7.1
Identities = 12/25 (48%), Positives = 17/25 (68%), Gaps = 3/25 (12%)
Query: 50 TLRSSRLTGRHKGDVS---FPGGKC 71
T+ S+ LTGRHKG ++ F G+C
Sbjct: 130 TIVSAELTGRHKGPLAERDFKSGRC 154
>gi|126012571 heparan sulfate proteoglycan 2 [Homo sapiens]
Length = 4391
Score = 26.2 bits (56), Expect = 9.3
Identities = 9/20 (45%), Positives = 15/20 (75%)
Query: 60 HKGDVSFPGGKCDPADQDVV 79
++G+ PGGKC P +Q++V
Sbjct: 858 YEGNPIQPGGKCRPVNQEIV 877
>gi|169167201 PREDICTED: hypothetical protein [Homo sapiens]
Length = 145
Score = 26.2 bits (56), Expect = 9.3
Identities = 13/22 (59%), Positives = 16/22 (72%)
Query: 16 RLLAGATARLRARPASAAVLVP 37
RL ATAR RA+PAS+A +P
Sbjct: 49 RLTDYATARARAQPASSAAQLP 70
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.137 0.422
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,022,037
Number of Sequences: 37866
Number of extensions: 269062
Number of successful extensions: 538
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 529
Number of HSP's gapped (non-prelim): 24
length of query: 140
length of database: 18,247,518
effective HSP length: 92
effective length of query: 48
effective length of database: 14,763,846
effective search space: 708664608
effective search space used: 708664608
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.