Guide to the Human Genome
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Name: NUDT8 Sequence: fasta or formatted (140aa) NCBI GI: 32469515
Description:

nudix-type motif 8

Referenced in:

Nucleotide Pathways

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.0         14           2
 C cysteine            2.9          4           1
 D aspartate           5.0          7           1
 E glutamate           6.4          9           2
 F phenylalanine       0.7          1           1
 G glycine             8.6         12           2
 H histidine           2.1          3           1
 I isoleucine          0.7          1           1
 K lysine              2.1          3           1
 L leucine            14.3         20           2
 M methionine          0.7          1           1
 N asparagine          0.7          1           1
 P proline             9.3         13           1
 Q glutamine           2.1          3           1
 R arginine           10.0         14           2
 S serine              6.4          9           2
 T threonine           4.3          6           1
 V valine             10.7         15           2
 W tryptophan          1.4          2           1
 Y tyrosine            1.4          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   nudix-type motif 8 
NUDT7                 0.142   nudix motif 7 
RBMS3                 0.027   RNA binding motif, single stranded interacting prote...
NUDT16                0.019   nudix-type motif 16 
TARBP1                0.019   TAR RNA binding protein 1 
EXO1                  0.015   exonuclease 1 isoform b 
EXO1                  0.015   exonuclease 1 isoform a 
EXO1                  0.015   exonuclease 1 isoform b 
NUDT6                 0.012   nudix-type motif 6 isoform b 
NUDT6                 0.012   nudix-type motif 6 isoform a 
NUDT2                 0.012   nudix-type motif 2 
NUDT2                 0.012   nudix-type motif 2 
NUDT2                 0.012   nudix-type motif 2 
OASL                  0.012   2'-5'-oligoadenylate synthetase-like isoform b [Homo...
OASL                  0.012   2'-5'-oligoadenylate synthetase-like isoform a [Homo...
LOC729956             0.008   hypothetical protein LOC729956 
COQ4                  0.008   coenzyme Q4 homolog 
LOC100130360          0.008   PREDICTED: hypothetical protein 
SMPD2                 0.008   sphingomyelin phosphodiesterase 2, neutral 
GLTSCR1               0.008   glioma tumor suppressor candidate region gene 1 [Ho...
NUDT10                0.008   nudix-type motif 10 
TMPRSS9               0.008   transmembrane protease, serine 9 
HSPG2                 0.004   heparan sulfate proteoglycan 2 
LOC729350             0.004   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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