Guide to the Human Genome
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Name: LOC729350 Sequence: fasta or formatted (145aa) NCBI GI: 169167201
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt prot {145aa} PREDICTED: hypothetical protein
alt prot {145aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            14.5         21           2
 C cysteine            0.0          0           0
 D aspartate           6.2          9           2
 E glutamate           6.9         10           1
 F phenylalanine       1.4          2           1
 G glycine             7.6         11           2
 H histidine           1.4          2           1
 I isoleucine          2.1          3           1
 K lysine              3.4          5           1
 L leucine             7.6         11           1
 M methionine          0.7          1           1
 N asparagine          2.1          3           1
 P proline            13.8         20           2
 Q glutamine           2.8          4           1
 R arginine            9.7         14           3
 S serine              8.3         12           2
 T threonine           6.9         10           2
 V valine              1.4          2           1
 W tryptophan          0.0          0           0
 Y tyrosine            3.4          5           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC729350             0.989   PREDICTED: hypothetical protein 
LOC729350             0.989   PREDICTED: hypothetical protein 
E2F5                  0.048   E2F transcription factor 5 isoform 2 
E2F5                  0.048   E2F transcription factor 5 isoform 1 
SYNPO                 0.041   synaptopodin isoform A 
RTN4                  0.037   reticulon 4 isoform B 
RTN4                  0.037   reticulon 4 isoform D 
RTN4                  0.037   reticulon 4 isoform A 
GNAS                  0.037   GNAS complex locus XLas 
WIPF3                 0.037   WAS/WASL interacting protein family, member 3 [Homo...
LOC728650             0.037   PREDICTED: hypothetical protein 
LOC728650             0.037   PREDICTED: hypothetical protein 
CASKIN1               0.037   CASK interacting protein 1 
FAM189B               0.033   hypothetical protein LOC10712 isoform b 
FAM189B               0.033   hypothetical protein LOC10712 isoform a 
CABIN1                0.033   calcineurin binding protein 1 
ZNF628                0.033   zinc finger protein 628 
ST5                   0.033   suppression of tumorigenicity 5 isoform 1 
ST5                   0.033   suppression of tumorigenicity 5 isoform 1 
LOC100127891          0.033   PREDICTED: similar to hCG2042508 
LOC100127891          0.033   PREDICTED: similar to hCG2042508 
LOC100127891          0.033   PREDICTED: similar to hCG2042508 
KIF26B                0.033   kinesin family member 26B 
ANKRD33B              0.030   PREDICTED: ankyrin repeat domain 33B 
PHACTR2               0.030   phosphatase and actin regulator 2 isoform 4 
PHACTR2               0.030   phosphatase and actin regulator 2 isoform 3 
PHACTR2               0.030   phosphatase and actin regulator 2 isoform 2 
PHACTR2               0.030   phosphatase and actin regulator 2 isoform 1 
TBKBP1                0.030   TBK1 binding protein 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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