Guide to the Human Genome
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Name: ZMIZ1 Sequence: fasta or formatted (1067aa) NCBI GI: 31543543
Description:

retinoic acid induced 17

Referenced in:

Additional Genes in Development

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.8         73           8
 C cysteine            1.7         18           3
 D aspartate           3.8         41           2
 E glutamate           2.9         31           2
 F phenylalanine       2.9         31           1
 G glycine             7.6         81           2
 H histidine           3.6         38           2
 I isoleucine          2.5         27           1
 K lysine              2.7         29           2
 L leucine             7.4         79           4
 M methionine          3.8         41           1
 N asparagine          6.7         72           2
 P proline            14.4        154           5
 Q glutamine           7.4         79           4
 R arginine            3.8         41           2
 S serine              9.1         97           2
 T threonine           5.2         55           2
 V valine              4.0         43           2
 W tryptophan          0.8          9           1
 Y tyrosine            2.6         28           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   retinoic acid induced 17 
ZMIZ2                 0.476   zinc finger, MIZ-type containing 2 isoform 1 
ZMIZ2                 0.461   zinc finger, MIZ-type containing 2 isoform 2 
PIAS3                 0.031   protein inhibitor of activated STAT, 3 
PIAS2                 0.029   protein inhibitor of activated STAT X isoform alpha ...
PIAS2                 0.029   protein inhibitor of activated STAT X isoform beta [...
PIAS4                 0.028   protein inhibitor of activated STAT, 4 
ARID1A                0.027   AT rich interactive domain 1A isoform a 
ARID1A                0.027   AT rich interactive domain 1A isoform b 
PIAS1                 0.026   protein inhibitor of activated STAT, 1 
PRB2                  0.023   proline-rich protein BstNI subfamily 2 
PRB1                  0.022   proline-rich protein BstNI subfamily 1 isoform 1 pre...
PRB3                  0.020   proline-rich protein BstNI subfamily 3 precursor [H...
NACA                  0.020   nascent polypeptide-associated complex alpha subuni...
PCLO                  0.020   piccolo isoform 2 
PCLO                  0.020   piccolo isoform 1 
RAPH1                 0.020   Ras association and pleckstrin homology domains 1 is...
SF1                   0.019   splicing factor 1 isoform 2 
SF1                   0.019   splicing factor 1 isoform 1 
ARID1B                0.019   AT rich interactive domain 1B (SWI1-like) isoform 1 ...
ARID1B                0.019   AT rich interactive domain 1B (SWI1-like) isoform 3 ...
TAF4                  0.018   TBP-associated factor 4 
ATN1                  0.018   atrophin-1 
ATN1                  0.018   atrophin-1 
SF1                   0.018   splicing factor 1 isoform 3 
COL10A1               0.017   type X collagen alpha 1 precursor 
FLJ22184              0.017   PREDICTED: hypothetical protein LOC80164 
GLTSCR1               0.017   glioma tumor suppressor candidate region gene 1 [Ho...
WDR33                 0.017   WD repeat domain 33 isoform 1 
WIPF1                 0.017   WAS/WASL interacting protein family, member 1 [Homo...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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