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Search of human proteins with 28558977
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|28558977 mediator complex subunit 26 [Homo sapiens]
(600 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|28558977 mediator complex subunit 26 [Homo sapiens] 1222 0.0
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens] 59 2e-08
gi|5803191 transcription elongation factor A 1 isoform 1 [Homo s... 58 3e-08
gi|239749424 PREDICTED: hypothetical protein XP_002347041 [Homo ... 56 1e-07
gi|4507385 transcription elongation factor A protein 2 isoform a... 53 9e-07
gi|48762934 alpha 2 type I collagen [Homo sapiens] 52 2e-06
gi|41349482 proline-rich protein BstNI subfamily 1 isoform 1 pre... 52 2e-06
gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens] 51 3e-06
gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens] 51 3e-06
gi|41350335 transcription elongation factor A (SII), 3 [Homo sap... 50 8e-06
gi|38505156 transcription elongation factor A protein 2 isoform ... 50 8e-06
gi|237757326 synaptojanin 1 isoform d [Homo sapiens] 49 1e-05
gi|126723060 zinc finger CCCH-type containing 4 [Homo sapiens] 49 2e-05
gi|78042577 MAP7 domain containing 1 [Homo sapiens] 49 2e-05
gi|148762969 myeloid/lymphoid or mixed-lineage leukemia 2 [Homo ... 48 2e-05
gi|149158690 HLA-B associated transcript-2 [Homo sapiens] 48 2e-05
gi|116256356 alpha 4 type IV collagen precursor [Homo sapiens] 48 2e-05
gi|47778921 alpha 1 type XIX collagen precursor [Homo sapiens] 48 2e-05
gi|112734870 hypothetical protein LOC57648 [Homo sapiens] 47 5e-05
gi|40805823 collagen, type XXII, alpha 1 [Homo sapiens] 47 5e-05
gi|42475970 synapse defective 1, Rho GTPase, homolog 1 [Homo sap... 47 5e-05
gi|124430752 kinesin family member 26B [Homo sapiens] 47 5e-05
gi|32964830 collagen, type VIII, alpha 2 [Homo sapiens] 47 7e-05
gi|209571537 proline-rich protein BstNI subfamily 2 [Homo sapiens] 47 7e-05
gi|29725624 collagen, type XXIII, alpha 1 [Homo sapiens] 47 7e-05
gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens] 46 9e-05
gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Hom... 46 1e-04
gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Hom... 46 1e-04
gi|239754940 PREDICTED: hypothetical protein [Homo sapiens] 46 1e-04
gi|73486666 alpha 1 type IX collagen isoform 1 precursor [Homo s... 46 1e-04
>gi|28558977 mediator complex subunit 26 [Homo sapiens]
Length = 600
Score = 1222 bits (3161), Expect = 0.0
Identities = 600/600 (100%), Positives = 600/600 (100%)
Query: 1 MTAAPASPQQIRDRLLQAIDPQSNIRNMVAVLEVISSLEKYPITKEALEETRLGKLINDV 60
MTAAPASPQQIRDRLLQAIDPQSNIRNMVAVLEVISSLEKYPITKEALEETRLGKLINDV
Sbjct: 1 MTAAPASPQQIRDRLLQAIDPQSNIRNMVAVLEVISSLEKYPITKEALEETRLGKLINDV 60
Query: 61 RKKTKNEELAKRAKKLLRSWQKLIEPAHQHEAALRGLAGATGSANGGAHNCRPEVGAAGP 120
RKKTKNEELAKRAKKLLRSWQKLIEPAHQHEAALRGLAGATGSANGGAHNCRPEVGAAGP
Sbjct: 61 RKKTKNEELAKRAKKLLRSWQKLIEPAHQHEAALRGLAGATGSANGGAHNCRPEVGAAGP 120
Query: 121 PRSIHDLKSRNDLQRLPGQRLDRLGSRKRRGDQRDLGHPGPPPKVSKASHDPLVPNSSPL 180
PRSIHDLKSRNDLQRLPGQRLDRLGSRKRRGDQRDLGHPGPPPKVSKASHDPLVPNSSPL
Sbjct: 121 PRSIHDLKSRNDLQRLPGQRLDRLGSRKRRGDQRDLGHPGPPPKVSKASHDPLVPNSSPL 180
Query: 181 PTNGISGSPESFASSLDGSGHAGPEGSRLERDENDKHSGKIPVNAVRPHTSSPGLGKPPG 240
PTNGISGSPESFASSLDGSGHAGPEGSRLERDENDKHSGKIPVNAVRPHTSSPGLGKPPG
Sbjct: 181 PTNGISGSPESFASSLDGSGHAGPEGSRLERDENDKHSGKIPVNAVRPHTSSPGLGKPPG 240
Query: 241 PCLQPKASVLQQLDRVDETPGPPHPKGPPRCSFSPRNSRHEGSFARQQSLYAPKGSVPSP 300
PCLQPKASVLQQLDRVDETPGPPHPKGPPRCSFSPRNSRHEGSFARQQSLYAPKGSVPSP
Sbjct: 241 PCLQPKASVLQQLDRVDETPGPPHPKGPPRCSFSPRNSRHEGSFARQQSLYAPKGSVPSP 300
Query: 301 SPRPQALDATQVPSPLPLAQPSTPPVRRLELLPSAESPVCWLEQPESHQRLAGPGCKAGL 360
SPRPQALDATQVPSPLPLAQPSTPPVRRLELLPSAESPVCWLEQPESHQRLAGPGCKAGL
Sbjct: 301 SPRPQALDATQVPSPLPLAQPSTPPVRRLELLPSAESPVCWLEQPESHQRLAGPGCKAGL 360
Query: 361 SPAEPLLSRAGFSPDSSKADSDAASSGGSDSKKKKRYRPRDYTVNLDGQVAEAGVKPVRL 420
SPAEPLLSRAGFSPDSSKADSDAASSGGSDSKKKKRYRPRDYTVNLDGQVAEAGVKPVRL
Sbjct: 361 SPAEPLLSRAGFSPDSSKADSDAASSGGSDSKKKKRYRPRDYTVNLDGQVAEAGVKPVRL 420
Query: 421 KERKLTFDPMTRQIKPLTQKEPVRADSPVHMEQQSRTELDKQEAKASLQSPFEQTNWKEL 480
KERKLTFDPMTRQIKPLTQKEPVRADSPVHMEQQSRTELDKQEAKASLQSPFEQTNWKEL
Sbjct: 421 KERKLTFDPMTRQIKPLTQKEPVRADSPVHMEQQSRTELDKQEAKASLQSPFEQTNWKEL 480
Query: 481 SRNEIIQSYLSRQSSLLSSSGAQTPGAHHFMSEYLKQEESTRQGARQLHVLVPQSPPTDL 540
SRNEIIQSYLSRQSSLLSSSGAQTPGAHHFMSEYLKQEESTRQGARQLHVLVPQSPPTDL
Sbjct: 481 SRNEIIQSYLSRQSSLLSSSGAQTPGAHHFMSEYLKQEESTRQGARQLHVLVPQSPPTDL 540
Query: 541 PGLTREVTQDDLDRIQASQWPGVNGCQDTQGNWYDWTQCISLDPHGDDGRLNILPYVCLD 600
PGLTREVTQDDLDRIQASQWPGVNGCQDTQGNWYDWTQCISLDPHGDDGRLNILPYVCLD
Sbjct: 541 PGLTREVTQDDLDRIQASQWPGVNGCQDTQGNWYDWTQCISLDPHGDDGRLNILPYVCLD 600
>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
Length = 1464
Score = 58.5 bits (140), Expect = 2e-08
Identities = 68/268 (25%), Positives = 93/268 (34%), Gaps = 35/268 (13%)
Query: 86 PAHQHEAALRGLAGATGSAN----GGAHNCRPEVGAAGPPRSIHDLKSRNDLQRLPGQRL 141
P + E GL G +G GA R G GPP + + + PG
Sbjct: 964 PGQRGERGFPGLPGPSGEPGKQGPSGASGERGPPGPMGPP-GLAGPPGESGREGAPGAEG 1022
Query: 142 D--RLGSRKRRGDQRDLGHPGPPPKVSKASHDPLVPNSSPLPTNGISG--SPESFASSLD 197
R GS +GD+ + G GPP V + G +G P +
Sbjct: 1023 SPGRDGSPGAKGDRGETGPAGPPGAPGAPGAPGPVGPAGKSGDRGETGPAGPAGPVGPVG 1082
Query: 198 GSGHAGPEGSRLERDENDKHSGKIPVNAVRPHTSSPGLGKPPGPCLQPKASVLQQLDRVD 257
G AGP+G R ++ E + + ++ H GL PPGP P
Sbjct: 1083 ARGPAGPQGPRGDKGETGEQGDR----GIKGHRGFSGLQGPPGPPGSPGEQ------GPS 1132
Query: 258 ETPGPPHPKGPPRCSFSPRNSRHEGSFARQQSLYAPKGSVPSPSPRPQALDATQVPSPLP 317
GP P+GPP + +P + L G + P PR + DA V P P
Sbjct: 1133 GASGPAGPRGPPGSAGAPG----------KDGLNGLPGPIGPPGPRGRTGDAGPVGPPGP 1182
Query: 318 LAQPSTPPVRRLELLPSAESPVCWLEQP 345
P P PSA +L QP
Sbjct: 1183 PGPPGPPGP------PSAGFDFSFLPQP 1204
Score = 41.6 bits (96), Expect = 0.002
Identities = 81/327 (24%), Positives = 104/327 (31%), Gaps = 67/327 (20%)
Query: 91 EAALRGLAGATGSA----------NGGAHNCRPEVGAAGPPRSIHDLKSRNDLQRLPGQR 140
+A +G AG G A N GA + G+AGPP + PG
Sbjct: 831 DAGAKGDAGPPGPAGPAGPPGPIGNVGAPGAKGARGSAGPPGATG----------FPGAA 880
Query: 141 LDRLGSRKRRGDQRDLGHPGPPPKVSKASHDPLVPNSSPLPTNGISGSP-------ESFA 193
R+G G + G PGPP K + P G G P E +
Sbjct: 881 -GRVGPP---GPSGNAGPPGPPGPAGKEGGKGPRGETGPAGRPGEVGPPGPPGPAGEKGS 936
Query: 194 SSLDGS----GHAGPEGSRLERDENDKHSGKIPVNAVRPHTSSPGLGKPPGPCLQPKASV 249
DG G GP+G +R G + + R PGL PGP +P
Sbjct: 937 PGADGPAGAPGTPGPQGIAGQR-------GVVGLPGQRGERGFPGL---PGPSGEPGK-- 984
Query: 250 LQQLDRVDETPGPPHPKGPPRCSFSPRNSRHEGSFARQQSLYAPKGSVPSPSPRPQALDA 309
Q GPP P GPP + P S EG+ + S G SP + +
Sbjct: 985 -QGPSGASGERGPPGPMGPPGLAGPPGESGREGAPGAEGS----PGRDGSPGAKGDRGET 1039
Query: 310 TQVPSPLPLAQPSTPPVRRLELLPSAESPVCWLEQPESHQRLAGPGCKAGLSPAEPLLSR 369
P P P P A PV + GP AG P P+ +R
Sbjct: 1040 G------PAGPPGAPGA------PGAPGPV-GPAGKSGDRGETGPAGPAG--PVGPVGAR 1084
Query: 370 AGFSPDSSKADSDAASSGGSDSKKKKR 396
P + D G K R
Sbjct: 1085 GPAGPQGPRGDKGETGEQGDRGIKGHR 1111
Score = 41.2 bits (95), Expect = 0.003
Identities = 53/222 (23%), Positives = 68/222 (30%), Gaps = 42/222 (18%)
Query: 86 PAHQHEAALRGLAGATGSAN----GGAHNCRPEVGAAGPPRSIHDLKSRNDLQRLPGQRL 141
P Q L G AG G G + + G AGP PG+
Sbjct: 247 PGPQGARGLPGTAGLPGMKGHRGFSGLDGAKGDAGPAGPKGEPGS----------PGEN- 295
Query: 142 DRLGSRKRRGDQRDLGHPGPPPKVSKASHDPLVPNSSPLPTNGISGSPESFASSLDGSGH 201
G RG + G PG P +D + P G +G P F ++ G
Sbjct: 296 GAPGQMGPRGLPGERGRPGAPGPAGARGNDGATGAAGPPGPTGPAG-PPGFPGAVGAKGE 354
Query: 202 AGPEGSRLERDENDKHSGKIPVNAVRPHTSSPGLGKPPGPCLQPKASVLQQLDRVDETPG 261
AGP+G R G VR PG GP P A D PG
Sbjct: 355 AGPQGPR----------GSEGPQGVRGEPGPPGPAGAAGPAGNPGA---------DGQPG 395
Query: 262 PPHPKGPPRCSFSPRNSRHEGSFARQQSLYAPKGSVPSPSPR 303
G P + +P F + P+G P P+
Sbjct: 396 AKGANGAPGIAGAP-------GFPGARGPSGPQGPGGPPGPK 430
Score = 41.2 bits (95), Expect = 0.003
Identities = 56/200 (28%), Positives = 67/200 (33%), Gaps = 49/200 (24%)
Query: 96 GLAGATGSAN-GGAHNCRPEVGAAGPPRSIHDLKSRNDLQRLPGQRLDRLGSRKRRGDQR 154
G GA G G R E G AGP + + +R G R D+ G +GD+
Sbjct: 1049 GAPGAPGPVGPAGKSGDRGETGPAGPAGPVGPVGARGPAGP-QGPRGDK-GETGEQGDRG 1106
Query: 155 DLGHPGPPPKVSKASHDPLVPNSSPLPTNGISGSPESFASSLDGSGHAGPEG-----SRL 209
GH G P P SP G SG+ SG AGP G
Sbjct: 1107 IKGHRG-----FSGLQGPPGPPGSP-GEQGPSGA----------SGPAGPRGPPGSAGAP 1150
Query: 210 ERDENDKHSGKIPVNAVRPHTSSPGLGKPPGPCLQPKASVLQQLDRVDETPGPPHPKGPP 269
+D + G I R T G PPGP PGPP P GPP
Sbjct: 1151 GKDGLNGLPGPIGPPGPRGRTGDAGPVGPPGP------------------PGPPGPPGPP 1192
Query: 270 RCSFS-------PRNSRHEG 282
F P+ H+G
Sbjct: 1193 SAGFDFSFLPQPPQEKAHDG 1212
Score = 35.8 bits (81), Expect = 0.12
Identities = 55/227 (24%), Positives = 75/227 (33%), Gaps = 39/227 (17%)
Query: 96 GLAGATGSANGGAHNCRPEVGAAGPPRSIHDLKSRNDLQRLPGQRLDRLGSRKRRGDQRD 155
G G TG + RP G GPP + + + + PG + G+ G +
Sbjct: 548 GPDGKTGPPGPAGQDGRP--GPPGPPGA----RGQAGVMGFPGPK----GAAGEPGKAGE 597
Query: 156 LGHPGPPPKVSKASHDPLVPNSSPLPTNGISGS--PESFASSLDGSGHAGPEGSRLERDE 213
G PGPP V A D P G +G + A S G GP G E
Sbjct: 598 RGVPGPPGAVGPAGKDGEAGAQGPPGPAGPAGERGEQGPAGSPGFQGLPGPAGPPGE--- 654
Query: 214 NDKHSGKIPVNAVRPHTSSPGLGKPPGPCLQPKASVLQQLDRVDETPGPPHPKGPPRCSF 273
+GK V +PG G P +Q GPP P GP +
Sbjct: 655 ----AGKPGEQGVPGDLGAPGPSGARGERGFPGERGVQ---------GPPGPAGPRGANG 701
Query: 274 SPRNSRHEGSFARQ-----------QSLYAPKGSVPSPSPRPQALDA 309
+P N +G Q + +G+ P P+ DA
Sbjct: 702 APGNDGAKGDAGAPGAPGSQGAPGLQGMPGERGAAGLPGPKGDRGDA 748
Score = 32.0 bits (71), Expect = 1.7
Identities = 58/235 (24%), Positives = 71/235 (30%), Gaps = 51/235 (21%)
Query: 94 LRGLAGATGSAN-GGAHNCRPEVGAAGPPRSIHDLKSRNDLQRLPGQRLDRLGSRKRRGD 152
+RGL G G GA + E G +GP G RG
Sbjct: 762 VRGLTGPIGPPGPAGAPGDKGESGPSGPA-----------------------GPTGARGA 798
Query: 153 QRDLGHPGPPPKVSKASHDPLVPNSSPLPTNGISGSPESFASSLDGS--GHAGPEGSRLE 210
D G PGPP A P + P G G P + D G AGP G
Sbjct: 799 PGDRGEPGPPGPAGFAG----PPGADGQP--GAKGEPGDAGAKGDAGPPGPAGPAGP--- 849
Query: 211 RDENDKHSGKIPVNAVRPHTSSPGLGKPPGPCLQPKASVLQQLDRVDETPGPPHPKGPPR 270
G I + G PPG P A+ GPP P GP
Sbjct: 850 -------PGPIGNVGAPGAKGARGSAGPPGATGFPGAAGRVGPPGPSGNAGPPGPPGPA- 901
Query: 271 CSFSPRNSRHEGSFARQQSLYAPK-GSVPSPSPRPQALDATQVPSPLPLAQPSTP 324
+ G R ++ A + G V P P A + + P P TP
Sbjct: 902 -------GKEGGKGPRGETGPAGRPGEVGPPGPPGPAGEKGSPGADGPAGAPGTP 949
Score = 31.6 bits (70), Expect = 2.2
Identities = 61/231 (26%), Positives = 75/231 (32%), Gaps = 39/231 (16%)
Query: 96 GLAGATGSA-NGGAHNCRPEVGAAGPPRSIHDLKSRNDLQRLPGQRLDRLGSRKRRGDQR 154
G AGA G A N GA GA G P + PG G+R G Q
Sbjct: 377 GPAGAAGPAGNPGADGQPGAKGANGAP----------GIAGAPGFP----GARGPSGPQG 422
Query: 155 DLGHPGPPPKVSKASHDPLVPNSSPLPTNGISGSPESFASSLDGSGHAGPEGSRLERDEN 214
PG PP S +P P S G G P G AG EG R R E
Sbjct: 423 ----PGGPPGPKGNSGEPGAPGSKG--DTGAKGEPGPVGVQ-GPPGPAGEEGKRGARGEP 475
Query: 215 DKHS-----GKIPVNAVRPHTSSPGLGKPPGPCLQPKASVLQQLDRVDETPGPPHPKGPP 269
G+ R + G+ P GP + + PGP PKG P
Sbjct: 476 GPTGLPGPPGERGGPGSRGFPGADGVAGPKGPAGERGS------------PGPAGPKGSP 523
Query: 270 RCSFSPRNSRHEGSFARQQSLYAPKGSVPSPSPRPQALDATQVPSPLPLAQ 320
+ P + G+ S +P + P P D P P A+
Sbjct: 524 GEAGRPGEAGLPGAKGLTGSPGSPGPDGKTGPPGPAGQDGRPGPPGPPGAR 574
>gi|5803191 transcription elongation factor A 1 isoform 1 [Homo
sapiens]
Length = 301
Score = 57.8 bits (138), Expect = 3e-08
Identities = 24/72 (33%), Positives = 45/72 (62%)
Query: 14 RLLQAIDPQSNIRNMVAVLEVISSLEKYPITKEALEETRLGKLINDVRKKTKNEELAKRA 73
R + +D +N L+++ L+ P+T E L+ TR+G +N +RK++ +EE+ A
Sbjct: 7 RFAKKMDKMVQKKNAAGALDLLKELKNIPMTLELLQSTRIGMSVNAIRKQSTDEEVTSLA 66
Query: 74 KKLLRSWQKLIE 85
K L++SW+KL++
Sbjct: 67 KSLIKSWKKLLD 78
>gi|239749424 PREDICTED: hypothetical protein XP_002347041 [Homo
sapiens]
Length = 287
Score = 55.8 bits (133), Expect = 1e-07
Identities = 22/60 (36%), Positives = 41/60 (68%)
Query: 26 RNMVAVLEVISSLEKYPITKEALEETRLGKLINDVRKKTKNEELAKRAKKLLRSWQKLIE 85
+N L+++ L+ P+T E L+ TR+G +N +RK++ +EE+ AK L++SW+KL++
Sbjct: 5 KNAAGALDLLKELKNIPMTLELLQSTRIGMSVNAIRKQSTDEEVTSLAKSLIKSWKKLLD 64
>gi|4507385 transcription elongation factor A protein 2 isoform a
[Homo sapiens]
Length = 299
Score = 52.8 bits (125), Expect = 9e-07
Identities = 26/83 (31%), Positives = 50/83 (60%), Gaps = 1/83 (1%)
Query: 14 RLLQAIDPQSNIRNMVAVLEVISSLEKYPITKEALEETRLGKLINDVRKKTKNEELAKRA 73
R+ + +D ++ ++++ L+ PIT L+ TR+G +N +RK++ +EE+ A
Sbjct: 10 RIARRLDKMVTKKSAEGAMDLLRELKAMPITLHLLQSTRVGMSVNALRKQSSDEEVIALA 69
Query: 74 KKLLRSWQKLIEPAHQHEAALRG 96
K L++SW+KL++ A +A RG
Sbjct: 70 KSLIKSWKKLLD-ASDAKARERG 91
>gi|48762934 alpha 2 type I collagen [Homo sapiens]
Length = 1366
Score = 51.6 bits (122), Expect = 2e-06
Identities = 61/236 (25%), Positives = 82/236 (34%), Gaps = 48/236 (20%)
Query: 85 EPAHQHEAALRGLAGATGSANG----------GAHNCRPEVGAAGPPRSIHDLKSRNDLQ 134
+P H+ E G G G+A G H R E G +GP + R
Sbjct: 941 QPGHKGERGYPGNIGPVGAAGAPGPHGPVGPAGKHGNRGETGPSGPVGPAGAVGPRGPS- 999
Query: 135 RLPGQRLDRLGSRKRRGDQRDLGHPGPPPKVSKASHDPLVPNSSPLPTNGISGSPESFAS 194
G + RGD+ + G GP H+ L +G G+P S
Sbjct: 1000 ----------GPQGIRGDKGEPGEKGPRGLPGLKGHNGLQGLPGIAGHHGDQGAPGSVGP 1049
Query: 195 SLDGSGHAGPEGSRLERDENDKHSGKIPVNAVRPHTSSPGLGKPPGPCLQPKASVLQQLD 254
+ G AGP G +D H G + +R G P GP
Sbjct: 1050 A-GPRGPAGPSGPA-GKDGRTGHPGTVGPAGIRGPQGHQG---PAGP------------- 1091
Query: 255 RVDETPGPPHPKGPPRCSFSPRNSRHEGSFARQQSLYAPKGSVPSPSPRPQALDAT 310
PGPP P GPP S + ++G F R P+ S PS P+ +DAT
Sbjct: 1092 -----PGPPGPPGPPGVSGGGYDFGYDGDFYRADQ---PR-SAPSLRPKDYEVDAT 1138
Score = 42.4 bits (98), Expect = 0.001
Identities = 59/229 (25%), Positives = 79/229 (34%), Gaps = 64/229 (27%)
Query: 85 EPAHQHEAALRGLAGATGSANGGAHNCRP----EVGAAGPPRS-----------IHDLKS 129
EP A RG AG G A H +P E G GP + ++
Sbjct: 122 EPGQTGPAGARGPAGPPGKAGEDGHPGKPGRPGERGVVGPQGARGFPGTPGLPGFKGIRG 181
Query: 130 RNDLQRLPGQ-----------------RLDRLGSRKRRGDQRDLGHPGPP-PKVSKASHD 171
N L L GQ + G+R G++ +G PGP + S S
Sbjct: 182 HNGLDGLKGQPGAPGVKGEPGAPGENGTPGQTGARGLPGERGRVGAPGPAGARGSDGSVG 241
Query: 172 PLVPNSSPLPTNGISG-----SPESFASSLDGSGHAGPEGSRLERDENDKHSGKIPVNAV 226
P+ P + P+ + G G P+ ++ +G AGP G R E
Sbjct: 242 PVGP-AGPIGSAGPPGFPGAPGPKGEIGAVGNAGPAGPAGPRGE---------------- 284
Query: 227 RPHTSSPGLGKPPGPCLQPKASVL------QQLDRVDETPGPPHPKGPP 269
PGL P GP P A+ L L V PG P P+G P
Sbjct: 285 ---VGLPGLSGPVGPPGNPGANGLTGAKGAAGLPGVAGAPGLPGPRGIP 330
Score = 33.1 bits (74), Expect = 0.75
Identities = 49/181 (27%), Positives = 62/181 (34%), Gaps = 31/181 (17%)
Query: 95 RGLAGATGSANGGAHNCRPEVGAAGPPRSIHDLKSRNDLQRLPGQRLDRLGSRKRRGDQR 154
RG+ G G+A GA R VG GP S + G++ G
Sbjct: 327 RGIPGPVGAA--GATGARGLVGEPGPAGSKGES-----------------GNKGEPGSAG 367
Query: 155 DLGHPGPPPKVSKASHDPLVPNSSPLPTNGISGSPESFA-SSLDG-SGHAGPEGSRLERD 212
G PGP + K + ++ P G+ GSP S DG +G GP GSR
Sbjct: 368 PQGPPGPSGEEGKRGPNGEAGSAGPPGPPGLRGSPGSRGLPGADGRAGVMGPPGSR---- 423
Query: 213 ENDKHSGKIPVNAVRPHTSSPGLGKP------PGPCLQPKASVLQQLDRVDETPGPPHPK 266
+G N PGL P PG L +D PGP P
Sbjct: 424 GASGPAGVRGPNGDAGRPGEPGLMGPRGLPGSPGNIGPAGKEGPVGLPGIDGRPGPIGPA 483
Query: 267 G 267
G
Sbjct: 484 G 484
>gi|41349482 proline-rich protein BstNI subfamily 1 isoform 1
preproprotein [Homo sapiens]
Length = 331
Score = 51.6 bits (122), Expect = 2e-06
Identities = 67/242 (27%), Positives = 85/242 (35%), Gaps = 33/242 (13%)
Query: 148 KRRGDQRDLGHP-GPPPKVSKASHDPLVPNSSPLPTNGISGSPESFASSLDGSGHAG--- 203
K R + G P GPPP+ P P P G P + G G
Sbjct: 86 KSRSPRSPPGKPQGPPPQGGNQPQGPPPPPGKP------QGPPPQGGNRPQGPPPPGKPQ 139
Query: 204 ---PEG--SRLERDENDKHSGKIPVNAVRPHTSSPGLGKPPGPCLQPKASVLQQLDRVDE 258
P+G SR R K G P +P P GKP GP P+ Q
Sbjct: 140 GPPPQGDKSRSPRSPPGKPQGPPPQGGNQPQGPPPPPGKPQGP--PPQGGKKPQ-----G 192
Query: 259 TPGPPHPKGPPRCSFSPRNSRHEGSFAR---QQSLYAPKGSVPSP----SPRPQALDATQ 311
P P P+GPP R+S+ + Q P+G P P P PQ + Q
Sbjct: 193 PPPPGKPQGPPPQGDKSRSSQSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQ 252
Query: 312 VPSPLPLAQPSTPPVRRLELLPSAESPVCWLEQPESHQ--RLAGPGCKAGLSPAEPLLSR 369
P P +P PP + SA SP + P + GP AG +P +P
Sbjct: 253 --GPPPPGKPQGPPAQGGSKSQSARSPPGKPQGPPQQEGNNPQGPPPPAGGNPQQPQAPP 310
Query: 370 AG 371
AG
Sbjct: 311 AG 312
Score = 44.3 bits (103), Expect = 3e-04
Identities = 50/187 (26%), Positives = 64/187 (34%), Gaps = 24/187 (12%)
Query: 148 KRRGDQRDLGHP-GPPPKVSKASHDPLVPNSSPLPTNGISGSPESFASSLDGSGHAG--- 203
K R + G P GPPP+ P P P G P G G
Sbjct: 147 KSRSPRSPPGKPQGPPPQGGNQPQGPPPPPGKP------QGPPPQGGKKPQGPPPPGKPQ 200
Query: 204 ---PEG--SRLERDENDKHSGKIPVNAVRPHTSSPGLGKPPGPCLQPKASVLQQLDRVDE 258
P+G SR + K G P +P P GKP GP P+ ++
Sbjct: 201 GPPPQGDKSRSSQSPPGKPQGPPPQGGNQPQGPPPPPGKPQGP--PPQGG-----NKPQG 253
Query: 259 TPGPPHPKGPPRCSFSPRNSRHEGSFARQQSLYAPKGSVPSPSPRPQALDATQVPSPLPL 318
P P P+GPP S S + Q +G+ P P P + Q +P P
Sbjct: 254 PPPPGKPQGPPAQGGSKSQSARSPP-GKPQGPPQQEGNNPQGPPPPAGGNPQQPQAP-PA 311
Query: 319 AQPSTPP 325
QP PP
Sbjct: 312 GQPQGPP 318
Score = 43.1 bits (100), Expect = 7e-04
Identities = 55/191 (28%), Positives = 65/191 (34%), Gaps = 40/191 (20%)
Query: 145 GSRKRRGDQRDLGHP-GPPPKVSKASHDPLVPNS--SPLPTNGISGSPESFASSLDGSGH 201
G K +G G P GPPP+ P P P P S SP S
Sbjct: 43 GGNKPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQGDKSRSPRS---------- 92
Query: 202 AGPEGSRLERDENDKHSGKIPVNAVRPHTSSPGLGKPPGPCLQPKASVLQQLDRVDETPG 261
P G K G P +P P GKP GP P+ +R P
Sbjct: 93 --PPG---------KPQGPPPQGGNQPQGPPPPPGKPQGP--PPQGG-----NRPQGPPP 134
Query: 262 PPHPKGPP---RCSFSPRNSRHEGSFARQQSLYAPKGSVPSP----SPRPQALDATQVPS 314
P P+GPP S SPR+ + Q P+G P P P PQ Q
Sbjct: 135 PGKPQGPPPQGDKSRSPRSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGKKPQ--G 192
Query: 315 PLPLAQPSTPP 325
P P +P PP
Sbjct: 193 PPPPGKPQGPP 203
>gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]
Length = 1466
Score = 51.2 bits (121), Expect = 3e-06
Identities = 69/246 (28%), Positives = 85/246 (34%), Gaps = 46/246 (18%)
Query: 95 RGLAGATGSANGGAHNCRPEVGAAGPPRSIHDLKSRNDLQRLPGQRLDRLGSRKRRGDQR 154
+GL G G+A E G G P S L R+ PG + DR G G
Sbjct: 998 QGLPGLAGTAG--------EPGRDGNPGS-DGLPGRDGS---PGGKGDR-GENGSPGAPG 1044
Query: 155 DLGHPGPPPKVSKASHDPLVPNSSPLPTNGISGSPESFASSLDGSGHAGPEGSRLERDEN 214
GHPGPP V A S P G +G+P S G GP+G R ++ E
Sbjct: 1045 APGHPGPPGPVGPAGKSGDRGESGPA---GPAGAPGPAGS----RGAPGPQGPRGDKGET 1097
Query: 215 DKHSGKIPVNAVRPHTSSPGLGKPPGPCLQPKASVLQQLDRVDETPGPPHPKGPPRCSFS 274
+ G + R +PG PGP Q A +PGP P+GP S
Sbjct: 1098 GER-GAAGIKGHRGFPGNPGAPGSPGPAGQQGAI---------GSPGPAGPRGPVGPSGP 1147
Query: 275 PRNSRHEGSFARQQSLYAPKGSVPSPSPRPQALDATQVPSPLPLAQPSTPPVRRLELLPS 334
P G G + P PR + SP QP P P
Sbjct: 1148 PGKDGTSGH----------PGPIGPPGPRGNRGERGSEGSPGHPGQPGPPGP------PG 1191
Query: 335 AESPVC 340
A P C
Sbjct: 1192 APGPCC 1197
Score = 47.8 bits (112), Expect = 3e-05
Identities = 57/209 (27%), Positives = 73/209 (34%), Gaps = 29/209 (13%)
Query: 115 VGAAGPPRSIHDLKSRNDLQRLPGQRLDRLGSRKRRGDQRDLGHPGPP--PKVSKASHDP 172
+G GP D K LPG G R G++ + G PGP P + +P
Sbjct: 767 IGPPGPAGQPGD-KGEGGAPGLPGIA----GPRGSPGERGETGPPGPAGFPGAPGQNGEP 821
Query: 173 LVPNSSPLPTNGISGSPESFASSLDGSGHAGPEGSRLERDENDKHSGKIPVNAVRPHTSS 232
P G P A GSG AGP G + + E G P A P +
Sbjct: 822 GGKGERGAPGEKGEGGPPGVAGPPGGSGPAGPPGPQGVKGERGSPGG--PGAAGFP--GA 877
Query: 233 PGLGKPPGPCLQPKASVLQQLDRVDETPGPPHPKGPPRCSFSPRNSRHEGSFARQQSLYA 292
GL PPG + PGPP P G P P + + G+ +
Sbjct: 878 RGLPGPPGS---------------NGNPGPPGPSGSPGKDGPPGPAGNTGA-PGSPGVSG 921
Query: 293 PKGSVPSPSPR--PQALDATQVPSPLPLA 319
PKG P + P A P PL +A
Sbjct: 922 PKGDAGQPGEKGSPGAQGPPGAPGPLGIA 950
Score = 40.0 bits (92), Expect = 0.006
Identities = 73/303 (24%), Positives = 95/303 (31%), Gaps = 40/303 (13%)
Query: 96 GLAGATGSANGGAHNCRPEV-GAAGPPRSIHDLKSRNDLQRLPGQRLDR--------LGS 146
GL GA G N P + G AG P +N + PG R +R G+
Sbjct: 408 GLMGARGPPGPAGANGAPGLRGGAGEP-------GKNGAKGEPGPRGERGEAGIPGVPGA 460
Query: 147 RKRRGDQRDLGHPGPPPKVSKASHDPLVPNSSPLPTNGISGSPESFASSLDGSGHAGPEG 206
+ G G PG A P NGI G + A G AGP G
Sbjct: 461 KGEDGKDGSPGEPGANGLPGAAGERGAPGFRGPAGPNGIPGE-KGPAGERGAPGPAGPRG 519
Query: 207 SRLERDENDKHSGKIPVNAVRPHTSSPGLGKPPGPCLQPKASVLQQLDRVDETPGPPHPK 266
+ E + G +R SPG PG +P Q PGP P+
Sbjct: 520 AAGEPGRDGVPGGP----GMRGMPGSPG---GPGSDGKPGPPGSQGESGRPGPPGPSGPR 572
Query: 267 GPPRCSFSPRNSRHEGSFARQQSLYAPKGSVPSPSPRPQALDATQVPSPLPLAQPSTPPV 326
G P P ++G+ + P G P P Q P P P
Sbjct: 573 GQPGVMGFPGPKGNDGAPGKNGERGGPGGPGPQGPPGKNGETGPQGP-PGPTG------- 624
Query: 327 RRLELLPSAESPVCWLEQPESHQRLAGPGCKAGLS--PAEPLLSRAGFSPDSSKADSDAA 384
P + P+ Q L G G G + P EP +P + DA
Sbjct: 625 ------PGGDKGDTGPPGPQGLQGLPGTGGPPGENGKPGEPGPKGDAGAPGAPGGKGDAG 678
Query: 385 SSG 387
+ G
Sbjct: 679 APG 681
Score = 34.3 bits (77), Expect = 0.34
Identities = 50/191 (26%), Positives = 63/191 (32%), Gaps = 41/191 (21%)
Query: 150 RGDQRDLGHPGPPPKVSKASHDPLVPNSSPLPTNGISGSPESFASSLDGSGHAGPEGSRL 209
+G Q G PGPP + + DP +P P G G P + S GP+
Sbjct: 102 QGPQGPKGDPGPPG-IPGRNGDPGIPGQPGSP--GSPGPP-----GICESCPTGPQNYSP 153
Query: 210 ERDENDKHSGKIPVNAVRPHTSSPGLGKPPGPCLQPKASVLQQLDRVDETPGPPHPKGPP 269
+ D D SG + GL PGP GPP P GPP
Sbjct: 154 QYDSYDVKSG----------VAVGGLAGYPGPA------------------GPPGPPGPP 185
Query: 270 RCSFSPRNSRHEGSFARQQSLYAPKGSVPSPSPRPQALDATQVPSPL--PLAQPSTPPVR 327
S P + GS Q P + PS P P P+ +P P R
Sbjct: 186 GTSGHPGS---PGSPGYQGPPGEPGQAGPSGPPGPPGAIGPSGPAGKDGESGRPGRPGER 242
Query: 328 RLELLPSAESP 338
L P + P
Sbjct: 243 GLPGPPGIKGP 253
>gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens]
Length = 904
Score = 51.2 bits (121), Expect = 3e-06
Identities = 95/392 (24%), Positives = 135/392 (34%), Gaps = 64/392 (16%)
Query: 103 SANGGAHNCRPEVGAAGPPRSIHD---------LKSRNDLQRLPGQRLDRLGSRKRRGDQ 153
SA+ RP A PP++ H KSR + PG+ ++ K ++
Sbjct: 391 SASPPRRRHRPSPPATPPPKTRHSPTPQQSNRTRKSRVSVS--PGRTSGKVTKHKGT-EK 447
Query: 154 RDLGHPGPPPKVSKASHDPLVPNSSPLPTNGISGSPESFASSLDGSGHAGPEGSRLERDE 213
R+ P P P+ + S + + + + S +G S DE
Sbjct: 448 RESPSPAPKPRKVELSESEEDKGGKMAAADSVQQRRQYRRQNQQSSSDSGSSSS--SEDE 505
Query: 214 NDKHSGKIPVNAVRPHTSSPGLGKPPGPCLQPKASVLQQLDRVDETPGP------PHPKG 267
K S R SP P P + K + + R +P P P P
Sbjct: 506 RPKRSHVKNGEVGRRRRHSPSRSASPSPRKRQKETSPRGRRRRSPSPPPTRRRRSPSPAP 565
Query: 268 PPRCSFSPR---NSRHEGSFARQQSLYAPKGSVP-----SPSPRPQALDATQVPSPLPLA 319
PPR +P R R++S + S P SPSP P+ A+ P P A
Sbjct: 566 PPRRRRTPTPPPRRRTPSPPPRRRSPSPRRYSPPIQRRYSPSPPPKRRTASPPPPPKRRA 625
Query: 320 QPSTPPVRRLELLPSAESPVCWLEQPESHQRLAGPGCKAGLSPAEPLLSRAGFSPDSSKA 379
PS PP RR+ P P P + +R SP+ R G SP S
Sbjct: 626 SPSPPPKRRVSHSP----PPKQRSSPVTKRR----------SPSLSSKHRKGSSPSRSTR 671
Query: 380 DSDAASSGGSDSKKKKRYRPRDYTVNLDGQVAEAGVKPVRLKERKLTFDPMTRQIKPLTQ 439
+ A S + + RPR + PVR R + P RQ P
Sbjct: 672 E---ARSPQPNKRHSPSPRPR-------APQTSSSPPPVR---RGASSSPQRRQ-SPSPS 717
Query: 440 KEPVRADSPVHMEQQSRTELDKQEAKASLQSP 471
P+R + SRT K+ KA+ SP
Sbjct: 718 TRPIR--------RVSRTPEPKKIKKAASPSP 741
Score = 44.3 bits (103), Expect = 3e-04
Identities = 77/316 (24%), Positives = 114/316 (36%), Gaps = 48/316 (15%)
Query: 159 PGPPPKVSKASHDPLVP---NSSPLPTNGISGSPESFASSLDGSGHAGPEGSRLERDEND 215
P PPPK AS P + SP P +S SP S P R +
Sbjct: 606 PSPPPKRRTASPPPPPKRRASPSPPPKRRVSHSPPPKQRS-------SPVTKRRSPSLSS 658
Query: 216 KH-SGKIPVNAVRPHTSSPGLGKPPGPCLQPKASVLQQLDRVDETPGPPHPKGPPRCSFS 274
KH G P + R SP K P +P+A + +P PP +G S S
Sbjct: 659 KHRKGSSPSRSTR-EARSPQPNKRHSPSPRPRAP------QTSSSP-PPVRRG---ASSS 707
Query: 275 PRNSRHEGSFARQQSLYAPKGSVPSPSPRPQALDATQVPSPLPLAQPSTPPVRRLELLPS 334
P+ R+QS PSPS RP ++ P P + + ++P + + + S
Sbjct: 708 PQ---------RRQS--------PSPSTRP-IRRVSRTPEPKKIKKAASPSPQSVRRVSS 749
Query: 335 AESPVCWLEQPESHQRLAGPGC------KAGLSPAEPLLSRAGFSPDSSKADSDAASSGG 388
+ S V +P + + A P SPA P+ +P S + GG
Sbjct: 750 SRS-VSGSPEPAAKKPPAPPSPVQSQSPSTNWSPAVPVKKAKSPTPSPSPPRNSDQEGGG 808
Query: 389 SDSKKKKRYRPRDYTVNLDGQVAEAGVKPVRLKERKLTFDPMTRQIKPLTQKEPVRADSP 448
KKKK + + + + + +T + L Q+EPV A P
Sbjct: 809 KKKKKKKDKKHKKDKKHKKHKKHKKEKAVAAAAAAAVTPAAIAAATTTLAQEEPVAAPEP 868
Query: 449 -VHMEQQSRTELDKQE 463
E ++ LD E
Sbjct: 869 KKETESEAEDNLDDLE 884
Score = 36.2 bits (82), Expect = 0.089
Identities = 97/468 (20%), Positives = 164/468 (35%), Gaps = 76/468 (16%)
Query: 118 AGPPRSIHDLKSRNDLQRLPGQRLDRLGSRKRRGDQRDLGHPGPPPKVSKASHDPLVPNS 177
AG P + +LK QR Q ++L S K++ + +D + ++S + +
Sbjct: 117 AGIPSAFLELKKEEIKQRQIEQ--EKLASMKKQDEDKDKRDK----EEKESSREKRERSR 170
Query: 178 SPLPTNGISGSPESFASSL---------------DGSGHAGPEGSRLERD-ENDKHSGKI 221
SP S SP +S + S P + E+ E + S K+
Sbjct: 171 SPRRRKSRSPSPRRRSSPVRRERKRSHSRSPRHRTKSRSPSPAPEKKEKTPELPEPSVKV 230
Query: 222 PVNAVRPHTSSPGLGK--PPGPCLQPKASVLQQLDRVDETPGPPHPKGPPRC-------S 272
+V+ TS+ + K P P +PK ++ + ++ P+ R S
Sbjct: 231 KEPSVQEATSTSDILKVPKPEPIPEPKEPSPEKNSKKEKEKEKTRPRSRSRSKSRSRTRS 290
Query: 273 FSPRNSRHEGSFARQQSLYAPKGSVPSPSPRPQALDAT---QVPSPLPLAQPSTPPVRRL 329
SP ++R + Y+P+ PSP RP T ++P P P + S PVRR
Sbjct: 291 RSPSHTRPRRRHRSRSRSYSPRRR-PSPRRRPSPRRRTPPRRMPPP-PRHRRSRSPVRRR 348
Query: 330 ELLPSAESPVCWLEQPESHQRLAGPGCKAGLSPAEPLLSRAGFSPDSSKADSDAASSGGS 389
+ + + S R P K + P SP +S S +
Sbjct: 349 R---RSSASLSGSSSSSSSSRSRSPPKKPPKRTSSPPRKTRRLSPSASPPRRRHRPSPPA 405
Query: 390 DSKKKKRYRPRDYTVNLDGQVAEAGVKPVRLKERKLTFDPMTRQIKPLTQKEPVRADSPV 449
K R+ P N R ++ +++ P K K + +SP
Sbjct: 406 TPPPKTRHSPTPQQSN-------------RTRKSRVSVSPGRTSGKVTKHKGTEKRESPS 452
Query: 450 HMEQQSRTEL-DKQEAKASLQSPFEQTNWKELSRNEIIQSYLSRQSSLLSSSGAQTPGAH 508
+ + EL + +E K + + + R + QS S S SSS + P
Sbjct: 453 PAPKPRKVELSESEEDKGGKMAAADSVQQRRQYRRQNQQS--SSDSGSSSSSEDERPKRS 510
Query: 509 HFM------------------SEYLKQEESTRQGARQLHVLVPQSPPT 538
H S +Q+E++ +G R+ P PPT
Sbjct: 511 HVKNGEVGRRRRHSPSRSASPSPRKRQKETSPRGRRRRS---PSPPPT 555
>gi|41350335 transcription elongation factor A (SII), 3 [Homo
sapiens]
Length = 348
Score = 49.7 bits (117), Expect = 8e-06
Identities = 31/127 (24%), Positives = 61/127 (48%), Gaps = 14/127 (11%)
Query: 14 RLLQAIDPQSNIRNMVAVLEVISSLEKYPITKEALEETRLGKLINDVRKKTKNEELAKRA 73
R+ + ++ +N L+++ L ++ + L+ TR+G +N VRK ++E+ A
Sbjct: 9 RIAKKLEKMVARKNTEGALDLLKKLHSCQMSIQLLQTTRIGVAVNGVRKHCSDKEVVSLA 68
Query: 74 KKLLRSWQKLI--------EPAHQHEAALRGLAGATGSANGGAHNCRPEVGAAGPPRSIH 125
K L+++W++L+ E + E A + G S + +PE G + P +
Sbjct: 69 KVLIKNWKRLLDSPGPPKGEKGEEREKAKKKEKGLECS------DWKPEAGLSPPRKKRE 122
Query: 126 DLKSRND 132
D K+R D
Sbjct: 123 DPKTRRD 129
>gi|38505156 transcription elongation factor A protein 2 isoform b
[Homo sapiens]
Length = 272
Score = 49.7 bits (117), Expect = 8e-06
Identities = 24/65 (36%), Positives = 43/65 (66%), Gaps = 1/65 (1%)
Query: 32 LEVISSLEKYPITKEALEETRLGKLINDVRKKTKNEELAKRAKKLLRSWQKLIEPAHQHE 91
++++ L+ PIT L+ TR+G +N +RK++ +EE+ AK L++SW+KL++ A +
Sbjct: 1 MDLLRELKAMPITLHLLQSTRVGMSVNALRKQSSDEEVIALAKSLIKSWKKLLD-ASDAK 59
Query: 92 AALRG 96
A RG
Sbjct: 60 ARERG 64
>gi|237757326 synaptojanin 1 isoform d [Homo sapiens]
Length = 1526
Score = 49.3 bits (116), Expect = 1e-05
Identities = 54/161 (33%), Positives = 67/161 (41%), Gaps = 20/161 (12%)
Query: 230 TSSPGLGKPPGPCLQPKASVLQQLDRVDETPGPPHPKGPPRCSFSPRNSRHEGSFARQQS 289
+SS GLG P P+ S Q + E P P P P R SR G + Q S
Sbjct: 1028 SSSSGLGTSPSS--SPRTSPCQS-PTISEGPVPSLPIRPSRAP-----SRTPGPPSAQSS 1079
Query: 290 LYAPKGSVPSPSPRP-QALDATQVPSPLPLAQPSTPPVRRLELLPSAESPVCWLEQPESH 348
+ + P P P Q L+ + P P P+A P+ P + PS S QP
Sbjct: 1080 PIDAQPATPLPQKDPAQPLEPKRPPPPRPVAPPTRPAPPQRPPPPSGRS------QPSPQ 1133
Query: 349 QRLAGPGCKAGLSPAEPLL-SRAGFSPDSSKADSDAASSGG 388
LAGPG AG S A P + RAG S S A +S G
Sbjct: 1134 AGLAGPG-PAGYSTARPTIPPRAGV---ISAPQSHARASAG 1170
Score = 36.6 bits (83), Expect = 0.068
Identities = 62/288 (21%), Positives = 94/288 (32%), Gaps = 47/288 (16%)
Query: 137 PGQRLDRLGSRKRRGDQRDLGHPGPPPKVSKASHDPLVPNSSPLPTNGISGSPESFASSL 196
P QR R + Q L PGP ++ P +P P G+ +P+S
Sbjct: 1117 PPQRPPPPSGRSQPSPQAGLAGPGP---AGYSTARPTIP-----PRAGVISAPQS----- 1163
Query: 197 DGSGHAGPEGSRLERDENDKHSGKIPVNAVRPHTSSPGLGKPPGPCLQPKASVLQQLDRV 256
HA RL + K S + P P PP L P A LQ+
Sbjct: 1164 ----HARASAGRLTPESQSKTSETSKGSTFLPEPLKPQAAFPPQSSLPPPAQRLQEPLVP 1219
Query: 257 DETPGP-----PHPKGPPRCSFSPRNSRHEGSFARQQSLYAPKGSVPSPSPRPQALD--- 308
P P P+ + PP+ R+S S A Q G P +D
Sbjct: 1220 VAAPMPQSGPQPNLETPPQPPPRSRSSHSLPSEASSQPQVKTNGISDGKRESPLKIDPFE 1279
Query: 309 --------ATQVPSPLPLAQPSTPPVRRLELLPSAES--------------PVCWLEQPE 346
++ + + TP +RL LPSA P+ Q +
Sbjct: 1280 DLSFNLLAVSKAQLSVQTSPVPTPDPKRLIQLPSATQSNVLSSVSCMPTMPPIPARSQSQ 1339
Query: 347 SHQRLAGPGCKAGLSPAEPLLSRAGFSPDSSKADSDAASSGGSDSKKK 394
+ R + GL+ P R + +A S+ + + SK++
Sbjct: 1340 ENMRSSPNPFITGLTRTNPFSDRTAAPGNPFRAKSEESEATSWFSKEE 1387
Score = 32.3 bits (72), Expect = 1.3
Identities = 56/251 (22%), Positives = 81/251 (32%), Gaps = 21/251 (8%)
Query: 86 PAHQHEAALRGLAGATGSANGGAHNCRPEVGAAGPPRSIHDLKSRNDLQRLPGQRLDRLG 145
P H ++ GL G + S++ C+ + GP S+ SR R PG +
Sbjct: 1022 PQHLQPSSSSGL-GTSPSSSPRTSPCQSPTISEGPVPSLPIRPSRAP-SRTPGPPSAQSS 1079
Query: 146 SRKRRG----DQRDLGHP-----GPPPKVSKASHDPLVPNSSPLPTNGISGSPESFASSL 196
+ Q+D P PPP+ P P P P+ SP++
Sbjct: 1080 PIDAQPATPLPQKDPAQPLEPKRPPPPRPVAPPTRPAPPQRPPPPSGRSQPSPQA----- 1134
Query: 197 DGSGHAGPEGSRLERDENDKHSGKIPVNAVRPHTSSPGLGKPPGPCLQPKASVLQQLDRV 256
G GP G R +G I S+ L P Q K S +
Sbjct: 1135 -GLAGPGPAGYSTARPTIPPRAGVISAPQSHARASAGRL----TPESQSKTSETSKGSTF 1189
Query: 257 DETPGPPHPKGPPRCSFSPRNSRHEGSFARQQSLYAPKGSVPSPSPRPQALDATQVPSPL 316
P P PP+ S P R + + G P+ PQ ++ L
Sbjct: 1190 LPEPLKPQAAFPPQSSLPPPAQRLQEPLVPVAAPMPQSGPQPNLETPPQPPPRSRSSHSL 1249
Query: 317 PLAQPSTPPVR 327
P S P V+
Sbjct: 1250 PSEASSQPQVK 1260
>gi|126723060 zinc finger CCCH-type containing 4 [Homo sapiens]
Length = 1303
Score = 48.5 bits (114), Expect = 2e-05
Identities = 93/366 (25%), Positives = 131/366 (35%), Gaps = 67/366 (18%)
Query: 161 PPPKVSKASH----DPLV----PNSSPLPTNGISGSPESF----ASSLDGSGHAGPEGSR 208
PP V + S DP + P S L +S P AS G G +GP R
Sbjct: 832 PPASVGELSSSGLGDPRLQKGHPTGSRLADPRLSRDPRLTRHVEASGGSGPGDSGPSDPR 891
Query: 209 LERD-ENDKHSGKIPVNAVRPHTSSPGLGKPPGPCLQPKASVLQQLDRVDETPGPPHPKG 267
L R K G + + V P +SS G G PP + + ++ ++ + P P HP
Sbjct: 892 LARALPTSKPEGSLHSSPVGP-SSSKGSGPPPTEEEEGERALREKAVNIPLDPLPGHPLR 950
Query: 268 PPRCSFSPRN------SRHEGSFARQQSLYAPKGSVPSPSPRPQALDATQVPSPLPLAQP 321
PR + + + SFAR L+ P+ +P P P+ A+ P+P A
Sbjct: 951 DPRSQLQQFSHIKKDVTLSKPSFAR-TVLWNPEDLIPLPIPKQDAV------PPVPAALQ 1003
Query: 322 STPPVRRLELLPSAESPVCWLEQPESHQRLAGPGCKAGLSPAEPLLSRAGFSPDSSKADS 381
S P + P H +A + R G S DSS +
Sbjct: 1004 SMPTL-----------------DPRLH--------RAATAGPPNARQRPGASTDSSTQGA 1038
Query: 382 DAASSGGSDSKKKKRYRPRDYTVNLDGQVAEAGV--KPVRLKERKLTFDPMTRQIKPLTQ 439
+ D + R TVN G A G KP + RK DP R KP
Sbjct: 1039 NL-----PDFELLSRILK---TVNATGSSAAPGSSDKPSDPRVRKAPTDP--RLQKPTDS 1088
Query: 440 KEPVRADSPVHMEQQSRTELDKQEAKASLQSPFEQTNWKELSRNEIIQSYLSRQSSLLSS 499
RA P E S T +A +P++ + L+ + Q QSS+LS
Sbjct: 1089 TASSRAAKPGPAEAPSPTASPSGDASPPATAPYDP---RVLAAGGLGQGGGGGQSSVLSG 1145
Query: 500 SGAQTP 505
P
Sbjct: 1146 ISLYDP 1151
>gi|78042577 MAP7 domain containing 1 [Homo sapiens]
Length = 841
Score = 48.5 bits (114), Expect = 2e-05
Identities = 99/446 (22%), Positives = 156/446 (34%), Gaps = 50/446 (11%)
Query: 103 SANGGAHNCRPEVGAAGPPRSIHDLKSRNDLQRLPGQRLDRLGSRKRRGDQRDLGHPGPP 162
S H C P G G R + S ++R P S ++ +++D
Sbjct: 374 SVTRSVHRCAP-AGERGERRKPNAGGSPAPVRRRPE------ASPVQKKEKKDKERENEK 426
Query: 163 PKVSKASHDPLVPNSSPLPTNGISGSPESFASSLDGSGHAGPEGSRLERDENDKHSGKIP 222
K + A L S LP + + S AS L A P H P
Sbjct: 427 EKSALARERSLKKRQS-LPASPRARLSASTASELSPKSKARPSSP-----STSWHRPASP 480
Query: 223 VNAVRP-HTSSPGLGKPPGPCLQPKASVLQQLDRVDETPGPPHPKGPPRCSFSPRNSRHE 281
+ P HT P P G PK V R +E P GP S S R + +E
Sbjct: 481 CPSPGPGHTLPPKPPSPRGTTASPKGRVR----RKEEAKESPSAAGPEDKSQSKRRASNE 536
Query: 282 GSFARQQSLYAPKGSVPSPSPRPQALDATQVPSPLPLAQPSTPPVRRLELLPSAESPVCW 341
A S PSP+P P + +P A ++PP + PS P+
Sbjct: 537 KESAAPAS--PAPSPAPSPTPAPPQKEQPPAETPTDAAVLTSPPAPAPPVTPS--KPMAG 592
Query: 342 LEQPESHQRLAGPGCKAGLS--PAEPLLSRAGFSPDSSKADSDAASSGGSDSKKKKRYRP 399
E RL + E R D + A + ++++ R
Sbjct: 593 TTDREEATRLLAEKRRQAREQREREEQERRLQAERDKRMREEQLAREAEARAEREAEARR 652
Query: 400 RDYTVNLDGQVAEAGVKPVRLKERKLTFDPMTRQIKPLTQKEPVRADSPVHMEQQSRTEL 459
R+ + AE + RL+++K + +R+ + E R + H +QQ E
Sbjct: 653 REEQEAREKAQAEQ-EEQERLQKQKEEAEARSRE-----EAERQRLEREKHFQQQ---EQ 703
Query: 460 DKQEAKASLQSPFEQTNWKELSRNEIIQSYLSRQSSLLSSSGAQTPGAHHFMSEYLKQEE 519
++QE + L+ ++T E+S + +Q S +++ +P E +K E
Sbjct: 704 ERQERRKRLEEIMKRTRKSEVSETK------QKQDSKEANANGSSP-------EPVKAVE 750
Query: 520 STRQG----ARQLHVLVPQSPPTDLP 541
+ G A Q +PQ P LP
Sbjct: 751 ARSPGLQKEAVQKEEPIPQEPQWSLP 776
Score = 32.3 bits (72), Expect = 1.3
Identities = 50/206 (24%), Positives = 80/206 (38%), Gaps = 24/206 (11%)
Query: 292 APKGSVPSPSPRPQALDATQVPSPLPLAQPSTPPVRRLELLPSAESPVCWL--------- 342
+P+G PSP P P + P P A + ++L L P ESP +
Sbjct: 28 SPEGD-PSPPPPPMSALVPDTPPDTPPAMKNATSSKQLPLEP--ESPSGQVGPRPAPPQE 84
Query: 343 EQPESHQRLAGPGCKA-GLSPAEPLLSRAGFSP------DSSKADSDAASSGGSDSKKKK 395
E P S + GP A G A P + SP DS + +G K+
Sbjct: 85 ESPSSEAKSRGPTPPAMGPRDARPPRRSSQPSPTAVPASDSPPTKQEVKKAGERHKLAKE 144
Query: 396 RYRPR-DYTVNLDGQVAEAGVKPVRLKERKLTFDPMTRQIKPLTQKEPVRADSPVHMEQQ 454
R R Y E K L+E++L R+++ K R + + Q+
Sbjct: 145 RREERAKYLAAKKAVWLEKEEKAKALREKQL--QERRRRLEEQRLKAEQRR-AALEERQR 201
Query: 455 SRTELDKQEAKASLQSPFEQTNWKEL 480
+ E +K+ +A++Q ++T W E+
Sbjct: 202 QKLEKNKERYEAAIQRSVKKT-WAEI 226
Score = 31.2 bits (69), Expect = 2.8
Identities = 23/98 (23%), Positives = 35/98 (35%), Gaps = 4/98 (4%)
Query: 157 GHPGPPPKVSKASHDPLVPNSSPLPTNGISGSPESFASSLDGSGHAGPEGSRLERDENDK 216
G P PPP A LVP++ P + + S L+ +G G R + +
Sbjct: 31 GDPSPPPPPMSA----LVPDTPPDTPPAMKNATSSKQLPLEPESPSGQVGPRPAPPQEES 86
Query: 217 HSGKIPVNAVRPHTSSPGLGKPPGPCLQPKASVLQQLD 254
S + P P +PP QP + + D
Sbjct: 87 PSSEAKSRGPTPPAMGPRDARPPRRSSQPSPTAVPASD 124
>gi|148762969 myeloid/lymphoid or mixed-lineage leukemia 2 [Homo
sapiens]
Length = 5537
Score = 48.1 bits (113), Expect = 2e-05
Identities = 57/211 (27%), Positives = 81/211 (38%), Gaps = 29/211 (13%)
Query: 161 PPPKVSKASHDPLVPNSSPLPTNG-ISGSPESFASSLDGSGHAGPEGSRLERDENDKHSG 219
PPP+VS+ S P+V SP P +S PE +S PE SRL D +
Sbjct: 646 PPPEVSRLSPLPVVSRLSPPPEESPLSPPPEESPTS------PPPEASRLSPPPEDSPTS 699
Query: 220 KIPVNAVR-----------PHTSSPGLGKPPGPCLQPKASVLQQLDRVDE---TPGPPHP 265
P ++ P SP L P P L P++ R +E +P P P
Sbjct: 700 PPPEDSPASPPPEDSLMSLPLEESPLLPLPEEPQLCPRSEGPHLSPRPEEPHLSPRPEEP 759
Query: 266 KGPPRCS---FSPRNSRHEGSFARQQSLYAPKGSVPSPSPRPQAL---DATQVP--SPLP 317
P+ SP+ ++ +P+ P SP+P+ L T+ P SP+P
Sbjct: 760 HLSPQAEEPHLSPQPEEPCLCAVPEEPHLSPQAEGPHLSPQPEELHLSPQTEEPHLSPVP 819
Query: 318 LAQPSTPPVRRLELLPSAESPVCWLEQPESH 348
+P L P +E P ESH
Sbjct: 820 EEPCLSPQPEESHLSPQSEEPCLSPRPEESH 850
Score = 44.7 bits (104), Expect = 2e-04
Identities = 69/254 (27%), Positives = 91/254 (35%), Gaps = 37/254 (14%)
Query: 161 PPPKVSKASHDPLVPNSSPLP-----TNGISGSPESFASSLDGSGHAGPEGSRLERDEND 215
PPP+ S+ S P +SPLP + + SP S PE S L
Sbjct: 460 PPPEASRLSPPPEELPASPLPEALHLSRPLEESPLS----------PPPEESPLSPPPES 509
Query: 216 KHSGKIPVNAVRPHTSSPGLGKPPGPCLQ------PKASVLQQLDRVDETPGPPHPKGPP 269
P + + SP PP P L+ P+AS L +E+P P P+ P
Sbjct: 510 S-----PFSPLEESPLSPPEESPPSPALETPLSPPPEASPLS--PPFEESPLSPPPEELP 562
Query: 270 RCSFSPRNSRHEGSFARQQSLYAPKGSVPSPSPRPQALDATQVPSPL---PLAQPSTPPV 326
S P SR P+ S SP P L SPL P P +PP
Sbjct: 563 -TSPPPEASRLSPPPEESPMSPPPEESPMSPPPEASRLFPPFEESPLSPPPEESPLSPPP 621
Query: 327 RRLELLPSAE-SPVCWLEQPESHQRLAGPGCKAGLSPAEPLLSRAGFSPDSSKADSDAAS 385
L P E SP + P ++ P + LSP P++SR P+ S
Sbjct: 622 EASRLSPPPEDSP---MSPPPEESPMSPPPEVSRLSPL-PVVSRLSPPPEESPLSPPPEE 677
Query: 386 SGGSDSKKKKRYRP 399
S S + R P
Sbjct: 678 SPTSPPPEASRLSP 691
Score = 38.5 bits (88), Expect = 0.018
Identities = 79/332 (23%), Positives = 106/332 (31%), Gaps = 44/332 (13%)
Query: 161 PPPKVSKASHDPLVPNSSPLPTNGISGSP--ESFASSLDGSGHAGP--EGSRLERDENDK 216
PPP+ S S P +SP P + + P ES L P EG L +
Sbjct: 691 PPPEDSPTSPPPEDSPASPPPEDSLMSLPLEESPLLPLPEEPQLCPRSEGPHLSPRPEEP 750
Query: 217 HSGKIPVNA-VRPHTSSPGLGKPP-------------------GPCLQPKASVLQQLDRV 256
H P + P P L P GP L P+ L +
Sbjct: 751 HLSPRPEEPHLSPQAEEPHLSPQPEEPCLCAVPEEPHLSPQAEGPHLSPQPEELHLSPQT 810
Query: 257 DE---TPGPPHP---KGPPRCSFSPRNSRHEGSFARQQSLYAPKGSVPSPSPRPQALDAT 310
+E +P P P P SP++ S ++S +P+ P SPRP+
Sbjct: 811 EEPHLSPVPEEPCLSPQPEESHLSPQSEEPCLSPRPEESHLSPELEKPPLSPRPEKPPEE 870
Query: 311 QVPSPLPLAQPSTPPVRRLELLP---------SAESPVCWLEQPESHQRLAGPGCKAGLS 361
P P P PP L P E P+ L + P L
Sbjct: 871 PGQCPAPEELPLFPPPGEPSLSPLLGEPALSEPGEPPLSPLPEELPLSPSGEPSLSPQLM 930
Query: 362 PAEPLLSRAGFSPDSSKADSDAASSGGSDSKKKKRYRPRDYTVNLDGQVAEAGVKPVRLK 421
P +PL SP + A A S G D L + E + P
Sbjct: 931 PPDPL--PPPLSPIITAAAPPALSPLGELEYPFGAKGDSDPESPLAAPILETPISPP--P 986
Query: 422 ERKLTF-DPMTRQIKPLTQKEPVRADSPVHME 452
E T +P+ I P + PV SP+ ME
Sbjct: 987 EANCTDPEPVPPMILPPSPGSPVGPASPILME 1018
Score = 35.4 bits (80), Expect = 0.15
Identities = 31/101 (30%), Positives = 40/101 (39%), Gaps = 19/101 (18%)
Query: 239 PGPCLQPKASVLQQLDRVDETPGPPHPKGPPRCSFSPRNSRHEGSFARQQSLYAPKGSVP 298
PG L+ + +L L + P PP + + + S + L AP P
Sbjct: 4865 PGYTLKSQLDILSLLKQESPAPEPP----------TQHSYTYNVSNLDVRQLSAPPPEEP 4914
Query: 299 SPSPRPQALDATQVPSPLPLAQPSTPPVRRLELLPSAESPV 339
SP P P A PSP A P T P+ L P AE PV
Sbjct: 4915 SPPPSPLA------PSP---ASPPTEPLVELPTEPLAEPPV 4946
Score = 34.3 bits (77), Expect = 0.34
Identities = 41/144 (28%), Positives = 51/144 (35%), Gaps = 36/144 (25%)
Query: 233 PGLGKPPGPCLQPKASVLQQLDRVDETPGPPHPKGPPRCSFSPRNSRHEGSFARQQSLYA 292
P LG PGP P + E P P+GPPR P G+ + L
Sbjct: 4261 PQLGGFPGPQTGP----------LQELGAGPRPQGPPRLPAPP------GALSTGPVL-G 4303
Query: 293 PKGSVPSPSPRPQALDATQVPSP---------LPLAQPSTPPVR--RLELLPSAESPVCW 341
P P PS + +Q+PSP LP P TP + LE P SP
Sbjct: 4304 PVHPTPPPSSPQEPKRPSQLPSPSSQLPTEAQLPPTHPGTPKPQGPTLEPPPGRVSPAA- 4362
Query: 342 LEQPESHQRLAGPGCKAGLSPAEP 365
+LA GL P +P
Sbjct: 4363 -------AQLADTLFSKGLGPWDP 4379
Score = 33.9 bits (76), Expect = 0.44
Identities = 88/375 (23%), Positives = 135/375 (36%), Gaps = 81/375 (21%)
Query: 157 GHPGP---PPKVSKASHDPLVPNSSPLPTNGISGSPESFASSLDGSGHAGPEGSRLERDE 213
G PGP P + A P P P P +S P + G H P S + +
Sbjct: 4265 GFPGPQTGPLQELGAGPRPQGPPRLPAPPGALSTGP------VLGPVHPTPPPSSPQEPK 4318
Query: 214 NDKH----SGKIPVNAVRPHTSSPGLGKPPGPCLQP-----KASVLQQLDRV-DETPGPP 263
S ++P A P T PG KP GP L+P + Q D + + GP
Sbjct: 4319 RPSQLPSPSSQLPTEAQLPPTH-PGTPKPQGPTLEPPPGRVSPAAAQLADTLFSKGLGPW 4377
Query: 264 HPKGPPRCSFSP-RNSRHEGSFARQQSLYAPKGSVPS----PSPRPQALDATQVPSPL-- 316
P + P ++S G + P+ S S P P AL A V
Sbjct: 4378 DPPDNLAETQKPEQSSLVPGHLDQVNGQVVPEASQLSIKQEPREEPCALGAQSVKREANG 4437
Query: 317 -PLAQPSTPPVRRLELLPSAESPVCWLEQPESHQRLAGPGCKAGLSPAEPLLSRAGFSPD 375
P+ P T +H LAGP +AG + LL
Sbjct: 4438 EPIGAPGT----------------------SNHLLLAGPRSEAGHLLLQKLL-------- 4467
Query: 376 SSKADSDAASSG-GSDSKKKKRYRPRDYTVNLDGQVAEAGVKPVRLKERKLTFDPMTRQ- 433
+A + S+G GS+ + + ++D ++A E+KL P ++
Sbjct: 4468 --RAKNVQLSTGRGSEGLR------AEINGHIDSKLAGL--------EQKLQGTPSNKED 4511
Query: 434 ---IKPLTQKEPVRADSPVHMEQQSRTELDKQEAKASLQSPFEQTNWKELSRNEIIQSYL 490
KPLT K P R SR +L K++ + ++ +Q +ELS + + +
Sbjct: 4512 AAARKPLTPK-PKRVQKASDRLVSSRKKLRKEDGVRASEALLKQLK-QELSLLPLTEPAI 4569
Query: 491 SRQSSLLSSSGAQTP 505
+ SL + G+ P
Sbjct: 4570 TANFSLFAPFGSGCP 4584
Score = 32.0 bits (71), Expect = 1.7
Identities = 54/235 (22%), Positives = 80/235 (34%), Gaps = 46/235 (19%)
Query: 162 PPKVSKASHDPLVPNSSPLPTNGISGSPESFASSLDGSGHAGPEGSRLERDENDKHSGKI 221
PP+ S LVP +SP P S S L G E E +
Sbjct: 1021 PPQCSPLLQHSLVPQNSPPSQCSPPALPLSVPSPLSPIGKVVGVSDEAELHEMETEK--- 1077
Query: 222 PVNAVRPHTSSPGLGKPPGPCLQPKASVLQQLDRVDETPGPPHPKGPPRCSFSPRNSRHE 281
+ +P P L+P A+ P P P S +P
Sbjct: 1078 -------------VSEPECPALEPSAT--------SPLPSPMGDLSCPAPSPAPALDDFS 1116
Query: 282 G---SFARQQSLYAPKGSVPSPSPRPQALDATQVPSPLPLAQPSTPPVRRLELLPSAE-- 336
G A + AP GS P P P +L + SP+ L PV +E+ P +
Sbjct: 1117 GLGEDTAPLDGIDAP-GSQPEPGQTPGSLASELKGSPVLLDPEELAPVTPMEVYPECKQT 1175
Query: 337 ----SPVCWLEQPESHQRLAGPGCKAGLSPAEPLLSRAGFSPD-SSKADSDAASS 386
SP E+P +A ++P P L ++ + S+ + DA++S
Sbjct: 1176 AGQGSPCEEQEEP-----------RAPVAPTPPTLIKSDIVNEISNLSQGDASAS 1219
>gi|149158690 HLA-B associated transcript-2 [Homo sapiens]
Length = 2157
Score = 48.1 bits (113), Expect = 2e-05
Identities = 76/269 (28%), Positives = 95/269 (35%), Gaps = 63/269 (23%)
Query: 100 ATGSANGGAHNCRPEVGAAGPPRSIHDLKSRNDLQRLPGQRLDRLGSRKRRGDQRDLGHP 159
A G+ GG P + A SR DL + R S +R G +R P
Sbjct: 1350 AVGTPGGGGGGAVPGISAM----------SRGDLSQRAKDLSKRSFSSQRPGMERQNRRP 1399
Query: 160 GPPPKVSKASHDPLVPNSSPLPTNGISGSPESFASSLDGSGHAGPEGSRLERDENDKHSG 219
GP K G SGS G G GP G R DK S
Sbjct: 1400 GPGGKA------------------GSSGSSS-------GGGGGGP-GGRTGPGRGDKRSW 1433
Query: 220 KIPVNAVR-PHTSSPGLGKPPGPCLQPKASVLQQLDRVDETPGPPHPKGPPRCSFSPRNS 278
P N R P PGL PP P P +S + +LD+V + +P G +
Sbjct: 1434 PSPKNRSRPPEERPPGLPLPPPP---PSSSAVFRLDQVIHS----NPAGIQQALAQ---- 1482
Query: 279 RHEGSFARQQSLYAPKGSVPSPSPRPQALDATQVPSPLPLAQPSTPPVRRLELLPSAESP 338
+RQ S+ AP G P +P A Q PSP P P + + S S
Sbjct: 1483 ----LSSRQGSVTAPGG---HPRHKPGLPQAPQGPSPRP------PTRYEPQRVNSGLSS 1529
Query: 339 VCWLEQPESHQRLAG--PGCKAGLSPAEP 365
E+P R G P AG+SP P
Sbjct: 1530 DPHFEEPGPMVRGVGGTPRDSAGVSPFPP 1558
Score = 40.8 bits (94), Expect = 0.004
Identities = 83/343 (24%), Positives = 117/343 (34%), Gaps = 81/343 (23%)
Query: 159 PGPPPKVSKASHDP-------------------LVPNSSPLPTNGISGSPE------SFA 193
P PPP V K P P + PT G++ +P S +
Sbjct: 518 PAPPPAVPKELPAPPAPPPASAPTPETEPEEPAQAPPAQSTPTPGVAAAPTLVSGGGSTS 577
Query: 194 SSLDGSGHAGPEGSRLERDENDKHSGKIPVNAVRPHTSSPGLGKPPGPCLQPKASVLQQL 253
S+ GS A P +L E G P V P T+ PP P ++PK
Sbjct: 578 STSSGSFEASPVEPQLPSKE-----GPEPPEEVPPPTT------PPVPKVEPKG------ 620
Query: 254 DRVDETPGPP-----HPKG----PPRCSFSPR----NSRHEGSFARQQSLYAPKGSVPSP 300
D + T PP +PK PPR + + + + + Q AP VP
Sbjct: 621 DGIGPTRQPPSQGLGYPKYQKSLPPRFQRQQQEQLLKQQQQHQWQQHQQGSAPPTPVPPS 680
Query: 301 SPRPQALDATQVPSPLPLAQPSTPP--VRRLELLPSAESPVCWLEQPESHQRLAGPGCKA 358
P+P L A P P + P + R +P W+ P P
Sbjct: 681 PPQPVTLGAVPAPQAPPPPPKALYPGALGRPPPMPPMNFDPRWMMIPP----YVDPRLLQ 736
Query: 359 GLSPAEPLLSRAGFSPDSSKADSDAASSGGSDSKKKKRYRPRDYTVNLDGQVAEAGVKPV 418
G P + G P S + + SGGS S+ R+ P + E G PV
Sbjct: 737 GRPPLD--FYPPGVHP-SGLVPRERSDSGGSSSEPFDRHAP--------AMLRERGTPPV 785
Query: 419 RLKERKLTFDPMTRQIKPLTQKEPVRADSPVHMEQQSRTELDK 461
+ KL + + T EP SP+ +Q+ E DK
Sbjct: 786 ---DPKLAW---VGDVFTATPAEPRPLTSPL---RQAADEDDK 819
Score = 30.0 bits (66), Expect = 6.3
Identities = 47/168 (27%), Positives = 55/168 (32%), Gaps = 43/168 (25%)
Query: 113 PEVGAAGPPRSIHDLKSRNDLQRLPGQRLDRLGSRKRRGDQRDLGHPGPPPKVSKASHDP 172
PE GA GPP S L+ PG R G PPPK +
Sbjct: 842 PENGAPGPPISRFPLEE-------PGPR----PLPWPPGSDEVAKIQTPPPKKEPPKEET 890
Query: 173 LV---PNSSPLPTNGISGSPESFASSLDGSGHAGPEGSRLE-RDEN-------DKHSGKI 221
P + P G+ GSG GP R E R E G
Sbjct: 891 AQLTGPEAGRKPARGV------------GSGGQGPPPPRRESRTETRWGPRPGSSRRGIP 938
Query: 222 PVNAVRPHTSSPGLGKPPGPC----LQPKASVLQQLDRVDETPGPPHP 265
P P + + KPP P L PK L++ DETP PP P
Sbjct: 939 PEEPGAPPRRAGPIKKPPPPTKVEELPPKP-----LEQGDETPKPPKP 981
Score = 29.6 bits (65), Expect = 8.3
Identities = 25/99 (25%), Positives = 35/99 (35%), Gaps = 28/99 (28%)
Query: 246 KASVLQQLDRVDETPGPP------HPKGPPRCSFSPRNSRHEGSFARQQSLYAPKGSVPS 299
+A+ ++L R+DE G P P PP +P AP +VP
Sbjct: 483 RAACAEKLKRLDEKFGAPDKRLKAEPAAPPAAPSTP----------------APPPAVPK 526
Query: 300 PSPRPQALDATQVPSPLPLAQPSTPPVRRLELLPSAESP 338
P P A P P P T P + P+ +P
Sbjct: 527 ELPAPPA------PPPASAPTPETEPEEPAQAPPAQSTP 559
>gi|116256356 alpha 4 type IV collagen precursor [Homo sapiens]
Length = 1690
Score = 48.1 bits (113), Expect = 2e-05
Identities = 81/307 (26%), Positives = 100/307 (32%), Gaps = 65/307 (21%)
Query: 86 PAHQHEAALRGLAGATGSANGGAHNCRPEVGAAGPP--RSIHDLKSRNDLQRLPGQRLDR 143
P LRG G G G + + G GPP + N L L GQ+
Sbjct: 1132 PGDHGMPGLRGQPGEMGDP--GPRGLQGDPGIPGPPGIKGPSGSPGLNGLHGLKGQK--- 1186
Query: 144 LGSRKRRGDQRDLGHPGPP--PKVSKASHDPLVPNSSPLPTNGISGSPESFASSLDGSGH 201
K D+G PGP P + DP P SP G G P SS G
Sbjct: 1187 --GTKGASGLHDVGPPGPVGIPGLKGERGDPGSPGISPPGPRGKKGPPGPPGSS----GP 1240
Query: 202 AGPEGSRLERDENDKHSGKIPVNAVRPHTSSPGLGKPPGPC----------LQPKASVLQ 251
GP G+ +G+ P + P PG PPGP L +L+
Sbjct: 1241 PGPAGA----------TGRAPKDI--PDPGPPGDQGPPGPDGPRGAPGPPGLPGSVDLLR 1288
Query: 252 QLDRVDETPGPPHPKGPPRCSFSPRNSRHEGSFARQQSLYAPKGSVPSPSPR-----PQA 306
PGPP P GPP P + F KG V P P+ P
Sbjct: 1289 GEPGDCGLPGPPGPPGPP----GPPGYK---GFPGCDGKDGQKGPVGFPGPQGPHGFPGP 1341
Query: 307 LDATQVPSPLPLAQPSTPPVRRLELLPSAESPVC----------WLEQPESHQRL----- 351
+P P P+ P R E P A+ C + PE L
Sbjct: 1342 PGEKGLPGPPGRKGPTGLPGPRGEPGPPADVDDCPRIPGLPGAPGMRGPEGAMGLPGMRG 1401
Query: 352 -AGPGCK 357
+GPGCK
Sbjct: 1402 PSGPGCK 1408
Score = 39.7 bits (91), Expect = 0.008
Identities = 51/188 (27%), Positives = 62/188 (32%), Gaps = 38/188 (20%)
Query: 150 RGDQRDLGHPGPPPKVSKASHDPLVPNSSPLPTNGISGSPESFASSLDGSGHAGPEGSRL 209
+GD + GHPGPP V + PLP G G P F +G GP G
Sbjct: 343 KGDPGNRGHPGPPG----------VLVTPPLPLKGPPGDP-GFPGRYGETGDVGPPGP-- 389
Query: 210 ERDENDKHSGKIPVNAVRPHTSSPGLGKPPGPCLQPKASVLQQ----LDRVDETPGPPHP 265
P RP + G+ PPGP P L R D PG P
Sbjct: 390 ------------PGLLGRPGEACAGMIGPPGPQGFPGLPGLPGEAGIPGRPDSAPGKPGK 437
Query: 266 KGPPRCSFSPRNSRHEGSFARQQSLYAP-----KGSVPSPSPR----PQALDATQVPSPL 316
G P +P GS S+ P KG V P R + + P
Sbjct: 438 PGSPGLPGAPGLQGLPGSSVIYCSVGNPGPQGIKGKVGPPGGRGPKGEKGNEGLCACEPG 497
Query: 317 PLAQPSTP 324
P+ P P
Sbjct: 498 PMGPPGPP 505
Score = 35.4 bits (80), Expect = 0.15
Identities = 68/283 (24%), Positives = 87/283 (30%), Gaps = 65/283 (22%)
Query: 116 GAAGPPRSIHDLKSRNDLQRLPGQRLDR-----------LGSRKRRGDQRDLGHPGPPPK 164
GA+GPP + K + R+ G + +R GS R G + G PGPP
Sbjct: 545 GASGPPGN-KGAKGDMVVSRVKGHKGERGPDGPPGFPGQPGSHGRDGHAGEKGDPGPP-- 601
Query: 165 VSKASHDPLVPNSSPLPTNGISGSP-ESFASSLDGSGHAGPEGSR--------------- 208
H+ P P G G P ++ G G GP G R
Sbjct: 602 ---GDHEDATPGGKGFP--GPLGPPGKAGPVGPPGLGFPGPPGERGHPGVPGHPGVRGPD 656
Query: 209 -LERDENDKHSGKIPVNAVRP-HTSSPGLGKPPGPCLQPKASVLQQLDRVD------ETP 260
L+ + D I N P PG PPGP P L D TP
Sbjct: 657 GLKGQKGD----TISCNVTYPGRHGPPGFDGPPGPKGFPGPQGAPGLSGSDGHKGRPGTP 712
Query: 261 GPPHPKGPPRCSFSPRNSRHEGSFARQQSLYAPKGSVPSPSPRPQALDATQVPSPLPLAQ 320
G GPP R + F ++ +P G P P P +P
Sbjct: 713 GTAEIPGPP----GFRGDMGDPGFGGEKG-SSPVGP-PGPPGSPGVNGQKGIPGDPAFGH 766
Query: 321 PSTPPVRRLELLPSAESPVCWLEQPESHQRLAGPGCKAGLSPA 363
P R L +P + P PGC PA
Sbjct: 767 LGPPGKRGLSGVPGIKGP------------RGDPGCPGAEGPA 797
Score = 33.9 bits (76), Expect = 0.44
Identities = 62/251 (24%), Positives = 82/251 (32%), Gaps = 38/251 (15%)
Query: 91 EAALRGLAGATGSANGGAHNC----RPEVGAAGPPRSIHDLKSRNDLQRLPGQRLDRLGS 146
+ LRG GA G + G GPP R D + PG + R G
Sbjct: 946 DRGLRGAKGAIGPPGDEGEMAIISQKGTPGEPGPPGDDGFPGERGD-KGTPGMQ-GRRGE 1003
Query: 147 RKR-------RGDQRDLGHPGPPPKVSKASHDPLVPNSSPLPTNGISGSP-----ESFAS 194
R RG+ + G PGPP P P S+ L G G P +
Sbjct: 1004 PGRYGPPGFHRGEPGEKGQPGPPGP-------PGPPGSTGL--RGFIGFPGLPGDQGEPG 1054
Query: 195 SLDGSGHAGPEGSRLERDENDKHSGKIPVNAVRPHTSSPGLGKPPGPCLQPKASVLQQLD 254
S G +G +G+R + + + SPG G + +Q
Sbjct: 1055 SPGPPGFSGIDGARGPKGNKGDPASHFGPPGPKGEPGSPGCPGHFGASGEQGLPGIQGPR 1114
Query: 255 RVDETPGPPHPKGPPRCSFSPRNSRHEGSFARQQSLYAPKGSVPSPSPRPQALDATQVPS 314
PGPP GPP C P + G L G + P PR D +P
Sbjct: 1115 GSPGRPGPPGSSGPPGC---PGDHGMPG-------LRGQPGEMGDPGPRGLQGD-PGIPG 1163
Query: 315 PLPLAQPSTPP 325
P + PS P
Sbjct: 1164 PPGIKGPSGSP 1174
Score = 33.5 bits (75), Expect = 0.57
Identities = 54/188 (28%), Positives = 63/188 (33%), Gaps = 45/188 (23%)
Query: 85 EPAHQH--EAALRGLAGATG-SANGGAHNCRPEVGAAGPPRSIHDLKSRNDLQRLPGQRL 141
+PA H RGL+G G G C G AG +PG L
Sbjct: 761 DPAFGHLGPPGKRGLSGVPGIKGPRGDPGCPGAEGPAG----------------IPGF-L 803
Query: 142 DRLGSRKRRGDQRDLGHPGPPPKVSKASHDPLVPNSSPLPTNGISGSPESFASSLDGSGH 201
G + R G G PGPP + P +P LP G GSP + G
Sbjct: 804 GLKGPKGREGHAGFPGVPGPPGHSCERGA-PGIPGQPGLP--GYPGSPGA-PGGKGQPGD 859
Query: 202 AGPEGSRLERDENDKHSGKIPVNAVRPHTSSP-GLGKPPGPCLQPKASVLQQLDRVDETP 260
GP G + +P RP P GL PGP D P
Sbjct: 860 VGPPGPAGMKG--------LPGLPGRPGAHGPPGLPGIPGPFGD------------DGLP 899
Query: 261 GPPHPKGP 268
GPP PKGP
Sbjct: 900 GPPGPKGP 907
Score = 32.3 bits (72), Expect = 1.3
Identities = 39/147 (26%), Positives = 50/147 (34%), Gaps = 42/147 (28%)
Query: 157 GHPGPPPKVSKASHDPLVPNSSPLPTNGISGSPESFASSLDGSGHAGPEGSRLERDENDK 216
G PGPP P+ P +P P G+SG G GP G+ D+ DK
Sbjct: 65 GPPGPP-----GPQGPIGPLGAPGPI-GLSGEKGM-------RGDRGPPGAA--GDKGDK 109
Query: 217 HSGKIPVNAVRPHTSSPGLGKPPGPCLQPKASVLQQLDRVDETPGPPHPKGPPRCSFSPR 276
+P PGL PG PGPP P+G P S
Sbjct: 110 GPTGVP--------GFPGLDGIPGH------------------PGPPGPRGKPGMS-GHN 142
Query: 277 NSRHEGSFARQQSLYAPKGSVPSPSPR 303
SR + F + P G + P +
Sbjct: 143 GSRGDPGFPGGRGALGPGGPLGHPGEK 169
Score = 31.6 bits (70), Expect = 2.2
Identities = 54/200 (27%), Positives = 67/200 (33%), Gaps = 33/200 (16%)
Query: 99 GATGSANGGAHNCRPEVGAAGPP------RSIHDLKSRN--DLQRLPGQRLDR--LGSRK 148
G G + +C PE G+ GPP I L + L G R DR G+
Sbjct: 45 GPCGGRDCSVCHCVPEKGSRGPPGPPGPQGPIGPLGAPGPIGLSGEKGMRGDRGPPGAAG 104
Query: 149 RRGDQRDLGHPGPPPKVSKASH-DPLVPNSSPLPT--NGISGSPESFASSLDGSGHAGPE 205
+GD+ G PG P H P P P + NG G P F G GP
Sbjct: 105 DKGDKGPTGVPGFPGLDGIPGHPGPPGPRGKPGMSGHNGSRGDP-GFPGGRGALGPGGPL 163
Query: 206 GSRLERDENDKHSGKI-PVNAVRPHTSSPGL---------GKPPGPCLQPKASVLQQLDR 255
G E+ E + V ++ PGL G P GP P L
Sbjct: 164 GHPGEKGEKGNSVFILGAVKGIQGDRGDPGLPGLPGSWGAGGPAGPTGYPGEPGL----- 218
Query: 256 VDETPGPPHPKGPPRCSFSP 275
GPP G P +P
Sbjct: 219 ----VGPPGQPGRPGLKGNP 234
Score = 30.4 bits (67), Expect = 4.9
Identities = 42/168 (25%), Positives = 55/168 (32%), Gaps = 54/168 (32%)
Query: 107 GAHNCRPEVGAAGP-----PRSIHDLKSRNDLQRLPGQRLDRLGSRKRRGDQRDLGHPGP 161
G C + G GP P+ H + LPG G + G G PGP
Sbjct: 1313 GFPGCDGKDGQKGPVGFPGPQGPHGFPGPPGEKGLPGPP----GRKGPTGLPGPRGEPGP 1368
Query: 162 PPKVSKASHDPLVPNSSPLPTNGISGSPESFASSLDGSGHAGPEGSRLERDENDKHSGKI 221
P V P +P G+ G+P G GPEG+
Sbjct: 1369 PADVDDC---PRIP--------GLPGAP----------GMRGPEGAM------------- 1394
Query: 222 PVNAVRPHTSSPGLGKPPGPCL--QPKASVLQQLDRVDETPGPPHPKG 267
PG+ P GP +P + +D V +PGPP KG
Sbjct: 1395 ---------GLPGMRGPSGPGCKGEPGLDGRRGVDGVPGSPGPPGRKG 1433
>gi|47778921 alpha 1 type XIX collagen precursor [Homo sapiens]
Length = 1142
Score = 48.1 bits (113), Expect = 2e-05
Identities = 75/296 (25%), Positives = 102/296 (34%), Gaps = 51/296 (17%)
Query: 85 EPAHQHEAALRGLAGATGS-ANGGAHNCRPEVGAAGPPRSIHDLKSRNDLQRLPGQRLDR 143
EP Q L GL G G+ N G + G GPP L D+ L
Sbjct: 639 EPGIQGPRGLPGLPGTPGTPGNDGVPGRDGKPGLPGPPGDPIALPLLGDIGALLKNFCGN 698
Query: 144 L-----GSRKRRGDQRDLGHPGPPPKVSKASHDPLVPNSSPLPTNGISGSPESFASSLDG 198
G + +G++ G PG +++ + G G P
Sbjct: 699 CQASVPGLKSNKGEEGGAGEPGKYDSMAR---------KGDIGPRGPPGIP--------- 740
Query: 199 SGHAGPEGSRLER-------DENDKHSGKIP-VNAVRPHTSSPGLGKPPGPCLQPKASVL 250
G GP+GS+ ER ++ D+ IP + T PGL G P +
Sbjct: 741 -GREGPKGSKGERGYPGIPGEKGDEGLQGIPGIPGAPGPTGPPGLMGRTG---HPGPTGA 796
Query: 251 QQLDRVDETPGPPHPKGPPRCSFSPRNSRHEGSFARQQSLYAPKGSVPSPS-PRPQALDA 309
+ D PG P P GPP F+ RN SLY KG V PS P P
Sbjct: 797 KGEKGSDGPPGKPGPPGPPGIPFNERNG--------MSSLYKIKGGVNVPSYPGPPGPPG 848
Query: 310 TQVPSPLPLAQPSTPPVRRLELLPSAESPVCWLEQPESHQRLAGPGCKAGLSPAEP 365
+ P P+ +P + LE P + P +AG K G +P P
Sbjct: 849 PK-GDPGPVGEPGAMGLPGLEGFPGVKGD----RGPAGPPGIAGMSGKPG-APGPP 898
Score = 35.4 bits (80), Expect = 0.15
Identities = 57/196 (29%), Positives = 69/196 (35%), Gaps = 26/196 (13%)
Query: 85 EPAHQHEAALRGLAGATGSANGGAHNCRPEVGAAGPPRSIHDLKSRNDLQRLPGQRLDRL 144
EP + E RG G GS + E G GPP I L GQ+
Sbjct: 484 EPFTKGEKGDRGEPGVIGS-----QGVKGEPGDPGPPGLIGS-------PGLKGQQ-GSA 530
Query: 145 GSRKRRGDQRDLGHPGP---PPK--VSKASHDP---LVPNSSPLPTN--GISGSPESFAS 194
GS RG D+G PG P K + DP + P P P G G
Sbjct: 531 GSMGPRGPPGDVGLPGEHGIPGKQGIKGEKGDPGGIIGPPGLPGPKGEAGPPGKSLPGEP 590
Query: 195 SLDGS-GHAGPEGSRLERDENDKHSGKIPVNAVRPHTSSPGLGKPPGPCLQPKASVLQQL 253
LDG+ G GP G + ER H P + PG GP +P + L
Sbjct: 591 GLDGNPGAPGPRGPKGERGLPGVHGS--PGDIGPQGIGIPGRTGAQGPAGEPGIQGPRGL 648
Query: 254 DRVDETPGPPHPKGPP 269
+ TPG P G P
Sbjct: 649 PGLPGTPGTPGNDGVP 664
Score = 33.9 bits (76), Expect = 0.44
Identities = 51/210 (24%), Positives = 73/210 (34%), Gaps = 69/210 (32%)
Query: 96 GLAGATGSANGGAHNCRPEVGAAGPPRSIHDLKSRNDLQRLPGQRLDRLGSRKRRGDQRD 155
G G GS H P G+ G P D S ++++ Q + R+ +
Sbjct: 983 GPPGNKGSMGSPGHQGPP--GSPGIPGIPADAVSFEEIKKYINQEVLRIFEERMAVFLSQ 1040
Query: 156 L------------GHPGPPPKVSKASHDPLVPNSSPLPTNGISGSPESFASSLDGSGHAG 203
L G PGPP K +G+ G P G G
Sbjct: 1041 LKLPAAMLAAQAYGRPGPPGK------------------DGLPGPP----------GDPG 1072
Query: 204 PEGSRLERDENDKHSGKIPVNAVRPHTSSPGLGKPPGPCLQPKASVLQQLDRVDETPGPP 263
P+G R ++ E PG+G P P L P S L + +PG P
Sbjct: 1073 PQGYRGQKGER----------------GEPGIGLPGSPGL-PGTSAL----GLPGSPGAP 1111
Query: 264 HPKGPP----RCSFSPRNSRHEGSFARQQS 289
P+GPP RC +P + + S A Q++
Sbjct: 1112 GPQGPPGPSGRC--NPEDCLYPVSHAHQRT 1139
Score = 33.5 bits (75), Expect = 0.57
Identities = 52/210 (24%), Positives = 66/210 (31%), Gaps = 39/210 (18%)
Query: 85 EPAHQHEAALRGLAGATGSANG-------GAHNCRPEVGAAGPPRSIHDLKSRNDLQRLP 137
E + + AL GL G G G + + G GPP L + Q P
Sbjct: 344 EQGEKGDPALAGLNGENGLKGDLGPHGPPGPKGEKGDTGPPGPPALPGSLGIQGP-QGPP 402
Query: 138 GQRLDRLGSRKRRGDQRDLGHPGPPPKVSKASHDPLVPNSSPLPTNGISGSPESFASSLD 197
G+ G R RRG G PGPP + G+ E A L
Sbjct: 403 GKE----GQRGRRGKTGPPGKPGPPGPPGPPGIQGIHQTLGGYYNKDNKGNDEHEAGGLK 458
Query: 198 GS----------GHAGPEGSRLERDE--------NDKHSGKIPVNAVRPHTSSPGLGKPP 239
G G GP+G + E E + G I V+ PG PP
Sbjct: 459 GDKGETGLPGFPGSVGPKGQKGEPGEPFTKGEKGDRGEPGVIGSQGVKGEPGDPG---PP 515
Query: 240 GPCLQPKASVLQQLDRVDETPGPPHPKGPP 269
G P L + G P+GPP
Sbjct: 516 GLIGSP------GLKGQQGSAGSMGPRGPP 539
Score = 32.3 bits (72), Expect = 1.3
Identities = 45/170 (26%), Positives = 64/170 (37%), Gaps = 27/170 (15%)
Query: 106 GGAHNCRPEVGAAGPPRSIHDLKSRNDLQRLPGQRLDRLGSRKRRGDQRDLGHPGPPPKV 165
GG + E G G P S+ + + PG+ + G + RG+ +G G V
Sbjct: 455 GGLKGDKGETGLPGFPGSVGPKGQKGE----PGEPFTK-GEKGDRGEPGVIGSQG----V 505
Query: 166 SKASHDPLVPNSSPLPTNGISGSPESFASSLDGSGHAGPEGSRLERDENDKHSGKIP-VN 224
DP P G+ GSP +G GP G + +H IP
Sbjct: 506 KGEPGDPGPP--------GLIGSP-GLKGQQGSAGSMGPRGPPGDVGLPGEHG--IPGKQ 554
Query: 225 AVRPHTSSPG--LGKP--PGPCLQ--PKASVLQQLDRVDETPGPPHPKGP 268
++ PG +G P PGP + P L +D PG P P+GP
Sbjct: 555 GIKGEKGDPGGIIGPPGLPGPKGEAGPPGKSLPGEPGLDGNPGAPGPRGP 604
>gi|112734870 hypothetical protein LOC57648 [Homo sapiens]
Length = 1094
Score = 47.0 bits (110), Expect = 5e-05
Identities = 87/350 (24%), Positives = 114/350 (32%), Gaps = 81/350 (23%)
Query: 100 ATGSANGGAHNCRPEVGAAGPPRSIHDLKSRNDLQRLPGQRLDRLGSRKRRGDQRDLGHP 159
++G +G + + R PPR H L R +P L L + R Q L P
Sbjct: 480 SSGQLSGRSVSLRKLKRPPPPPRRTHSLHQRG--LAVPDGPLG-LPPKPERKQQPQLPRP 536
Query: 160 GPPPKVSKASHDPLVPNSSPLPTNGISG--------SPESFASSLDGSGHAGPEGSRLER 211
A P PN + G+S SPE S SG++ G+
Sbjct: 537 PTTGGSEGAGAAPCPPNPANSWVPGLSPGGSRRPPRSPERTLSP--SSGYSSQSGTPT-- 592
Query: 212 DENDKHSGKIPVNAVRPHTSSPGLGKPPGP-----CLQPKASVLQQLDRV-----DETPG 261
+P + +SPG +PP P P ASV L + D P
Sbjct: 593 ---------LPPKGLAGPPASPGKAQPPKPERVTSLRSPGASVSSSLTSLCSSSSDPAPS 643
Query: 262 -----------------PPHPKGPPRCSFSPRNSRHEGSFARQQSLYAPK---------G 295
PPHPK P FSP S+ +L AP
Sbjct: 644 DRSGPQILTPLGDRFVIPPHPKVP--APFSPPPSKPRSPNPAAPALAAPAVVPGPVSTTD 701
Query: 296 SVPSPSPRPQAL------------DATQVPSPLPLAQPSTPPVRRLELLPSAESPVCWLE 343
+ P P PQ D + PSP P P PP ++ E++ A S E
Sbjct: 702 ASPQSPPTPQTTLTPLQESPVISKDQSPPPSPPPSYHPPPPPTKKPEVVVEAPSASETAE 761
Query: 344 QPESHQRLAGPGCKAGLSPAEPLLSRAGFSPDS----SKADSDAASSGGS 389
+P P A P E LS A F P S A + A GS
Sbjct: 762 EPLQDPNWPPPPPPA---PEEQDLSMADFPPPEEAFFSVASPEPAGPSGS 808
Score = 30.8 bits (68), Expect = 3.7
Identities = 43/162 (26%), Positives = 53/162 (32%), Gaps = 20/162 (12%)
Query: 175 PNSSPLPTNGISGSPESFASSLDGSGHAGPEGSRLERDENDKHSGKIPVNAVRPHTSSPG 234
P S P P ++ ES S D S P S K + T+
Sbjct: 704 PQSPPTPQTTLTPLQESPVISKDQSPPPSPPPSYHPPPPPTKKPEVVVEAPSASETAEEP 763
Query: 235 LGKPPGPCLQPKASVLQQLDRVD-----------ETPGPPHPKGPPRCSFSPRNSRHEGS 283
L P P P A Q L D +P P P G P SP S +
Sbjct: 764 LQDPNWPPPPPPAPEEQDLSMADFPPPEEAFFSVASPEPAGPSGSPELVSSPAASSSSAT 823
Query: 284 FARQQSLYAPKGSVPSPSPRPQA-LDATQVP---SPLPLAQP 321
+ Q P GS P P P P A A+ P + LP +P
Sbjct: 824 ALQIQ----PPGS-PDPPPAPPAPAPASSAPGHVAKLPQKEP 860
>gi|40805823 collagen, type XXII, alpha 1 [Homo sapiens]
Length = 1626
Score = 47.0 bits (110), Expect = 5e-05
Identities = 62/224 (27%), Positives = 80/224 (35%), Gaps = 40/224 (17%)
Query: 86 PAHQHEAALRGLAGATGSANGGAHNCRPEVGAAGPPRSIHDLKSRNDLQRLPGQRLDRLG 145
P + + G GA G+ H P G +GPP S+ L+ PG+ G
Sbjct: 900 PGAKGQEGAHGAPGAAGNPGAPGHVGAP--GPSGPPGSV----GAPGLRGTPGKD----G 949
Query: 146 SRKRRGDQRDLGHPGPPPKVSKASHDPLVPNSSPLPTNGISGSPESFASSLDGS-GHAGP 204
R +G + G PGP DP P P G G P L GS G GP
Sbjct: 950 ERGEKGAAGEEGSPGPVGPRG----DPGAPGLPGPPGKGKDGEP-----GLRGSPGLPGP 1000
Query: 205 EGSR-----LERDENDKHSGKIPVNAVRPHTSSPGLGKPPGPCLQPKASVLQQLDRVDET 259
G++ + EN G+ V+ +PG+ PG P V
Sbjct: 1001 LGTKAACGKVRGSENCALGGQ----CVKGDRGAPGIPGSPGSRGDPGIGVA--------- 1047
Query: 260 PGPPHPKGPPRCSFSPRNSRHEGSFARQQSLYAPKGSVPSPSPR 303
GPP P GPP SP SR F Q G+ +P R
Sbjct: 1048 -GPPGPSGPPGDKGSP-GSRGLPGFPGPQGPAGRDGAPGNPGER 1089
Score = 37.4 bits (85), Expect = 0.040
Identities = 49/190 (25%), Positives = 66/190 (34%), Gaps = 53/190 (27%)
Query: 86 PAHQHEAALRGLAGATGSANGGAHNCRPEVGAAGPPRSIHDLKSRNDLQRLPGQRLDRLG 145
P + +G G +G A G + +VG AGPP +PG + + G
Sbjct: 610 PGKPGDTGQQGRPGPSGVA--GPQGEKGDVGPAGPPG-------------VPGSVVQQEG 654
Query: 146 SRKRRGDQRDLGH---PGPPPKVSKASHDPLVPNS--SPLPTNGISGSPESFASSLDGSG 200
+ +G GH PGPP + P+ P P G+ G G
Sbjct: 655 LKGEQGAPGPRGHQGAPGPP-----GARGPIGPEGRDGPPGLQGLRGK----------KG 699
Query: 201 HAGPEGSRLERDENDKHSGKIP-VNAVRPHTSSPGLGKPPGPCLQPKASVLQQLDRVDET 259
GP G IP + ++ PG+ PPGP P L
Sbjct: 700 DMGPPG--------------IPGLLGLQGPPGPPGVPGPPGPGGSPG---LPGEIGFPGK 742
Query: 260 PGPPHPKGPP 269
PGPP P GPP
Sbjct: 743 PGPPGPTGPP 752
Score = 37.0 bits (84), Expect = 0.052
Identities = 53/210 (25%), Positives = 76/210 (36%), Gaps = 31/210 (14%)
Query: 85 EPAHQHEAALRGLAGATGSANGGAHNCRP-EVGAAGPPRSIH---------DLKSRNDLQ 134
EP + E L G G G RP E G AG P + D + +L
Sbjct: 769 EPGERGEDGLPGKPGLRGEIGEQGLAGRPGEKGEAGLPGAPGFPGVRGEKGDQGEKGELG 828
Query: 135 RLPGQRLDRLGSRKRRGDQRDLGHPGPPPKVSKASHDPLVP-NSSPLPTNGISGSP---- 189
LPG + G R +G+ G PG P S + P +P P G G P
Sbjct: 829 -LPGLK----GDRGEKGEAGPAGPPGLPGTTSLFTPHPRMPGEQGPKGEKGDPGLPGEPG 883
Query: 190 -ESFASSLDGSGHAGPEGSRLERDENDKHSGKIPVNAVRPHTSSPGLGKPPGPCLQP--K 246
+ L G GP G++ + + G H +PG PPG P +
Sbjct: 884 LQGRPGELGPQGPTGPPGAKGQEGAHGA-PGAAGNPGAPGHVGAPGPSGPPGSVGAPGLR 942
Query: 247 ASVLQQLDRVDE-------TPGPPHPKGPP 269
+ + +R ++ +PGP P+G P
Sbjct: 943 GTPGKDGERGEKGAAGEEGSPGPVGPRGDP 972
Score = 35.4 bits (80), Expect = 0.15
Identities = 64/235 (27%), Positives = 81/235 (34%), Gaps = 46/235 (19%)
Query: 115 VGAAGPPRSIHDL---------KSRNDLQRLPGQRLDRLGSRKRRGDQRDLGHPGPPPKV 165
VGA GP D+ K LPG R GS+ RG+ +LG PG P +V
Sbjct: 507 VGAPGPKGEKGDVGIGPFGQGEKGEKGSLGLPGPP-GRDGSKGMRGEPGELGEPGLPGEV 565
Query: 166 SKASHDPLVPNSSPLPTNGISGSPESFASSLDGSGHAGPEGSRLERDEN--DKHSGKIPV 223
P P P P G G+P G G +G+R E+ E D GK
Sbjct: 566 --GMRGPQGPPGLPGPP-GRVGAPGL-------QGERGEKGTRGEKGERGLDGFPGKPGD 615
Query: 224 NAVRPHTSSPGLGKPP------GPCLQP--KASVLQQLDRVDETPGPPHPKGPPRCSFSP 275
+ G+ P GP P SV+QQ + + G P P+G P
Sbjct: 616 TGQQGRPGPSGVAGPQGEKGDVGPAGPPGVPGSVVQQ-EGLKGEQGAPGPRGHQGAPGPP 674
Query: 276 RNSRHEGSFARQ-----QSLYAPKGSVPSPSPRPQALDATQVPSPLPLAQPSTPP 325
G R Q L KG + P +P L L P PP
Sbjct: 675 GARGPIGPEGRDGPPGLQGLRGKKGDMGPPG----------IPGLLGLQGPPGPP 719
Score = 32.3 bits (72), Expect = 1.3
Identities = 48/198 (24%), Positives = 72/198 (36%), Gaps = 30/198 (15%)
Query: 95 RGLAGATGSANGGAHNCRPEVGAAGP--PRSIHDLKSRNDLQRLPGQRLDRLGSRKRRGD 152
+G+ G G G EVG GP P + R L G+R ++ G+R +G+
Sbjct: 547 KGMRGEPGEL--GEPGLPGEVGMRGPQGPPGLPGPPGRVGAPGLQGERGEK-GTRGEKGE 603
Query: 153 QRDLGHPGPPPKVSKASHDPLVPNSSPLPTNGISGSPESFASSLDGSGHAGPEGSRLERD 212
+ G PG P + P P+ G++G P+ + +G G GS ++++
Sbjct: 604 RGLDGFPGKPGDTGQQGR--------PGPS-GVAG-PQGEKGDVGPAGPPGVPGSVVQQE 653
Query: 213 ENDKHSGKIPVNAVRPHTSSPGLGKPPGPCLQPKASVLQQLDR---------------VD 257
G + PG P GP + LQ L +
Sbjct: 654 GLKGEQGAPGPRGHQGAPGPPGARGPIGPEGRDGPPGLQGLRGKKGDMGPPGIPGLLGLQ 713
Query: 258 ETPGPPHPKGPPRCSFSP 275
PGPP GPP SP
Sbjct: 714 GPPGPPGVPGPPGPGGSP 731
Score = 30.8 bits (68), Expect = 3.7
Identities = 46/187 (24%), Positives = 61/187 (32%), Gaps = 54/187 (28%)
Query: 96 GLAGATGSANGGAHNCRPEVGAAGPPRSIHDLKSRNDLQRLPGQRLDRLGSRKRRGDQRD 155
G+AGA G + G GPP + + L +PG+ G +
Sbjct: 1207 GIAGAAGPPG-----IQGSPGKEGPPGP----QGPSGLPGIPGEE----------GKEGR 1247
Query: 156 LGHPGPPPKVSKASHDPLVPNSSPLPTNGISGSPESFASSLDGSGHAGPEGSRLERDEND 215
G PGPP + KA +P +P G G P F SG GP G
Sbjct: 1248 DGKPGPPGEPGKAG-EPGLPGPE-----GARGPP-GFKGHTGDSGAPGPRGE-------- 1292
Query: 216 KHSGKIPVNAVRPHTSSPGLGKPPGPCLQPKASVLQQLDRVDETPGPPHPKGPPRCSFSP 275
SG + + G P GP GP P+GPP + SP
Sbjct: 1293 --SGAMGLPGQEGLPGKDGDTGPTGP------------------QGPQGPRGPPGKNGSP 1332
Query: 276 RNSRHEG 282
+ G
Sbjct: 1333 GSPGEPG 1339
Score = 29.6 bits (65), Expect = 8.3
Identities = 46/174 (26%), Positives = 63/174 (36%), Gaps = 21/174 (12%)
Query: 96 GLAGATGSANGGAHNCRPEVGAAGPPRSIHDLKSRNDLQRLPGQRLDRLGSRKRRGDQRD 155
GL G G G R G GP L ++ ++ G LG + +GD+
Sbjct: 976 GLPGPPGKGKDGEPGLRGSPGLPGP------LGTKAACGKVRGSENCALGGQCVKGDRGA 1029
Query: 156 LGHPGPPPKVSKASHDPLVPNSSPLPTNGISGSPESFASSLDGSGHAGPEGSRLERDEND 215
G PG P + DP + + P +G G S S G GP+G RD
Sbjct: 1030 PGIPGSP----GSRGDPGIGVAGPPGPSGPPGDKGS-PGSRGLPGFPGPQGP-AGRDGAP 1083
Query: 216 KHSGKIPVNAVRPHTSSPGLGKPPGPCLQPKASVLQQLDRVDETPGPPHPKGPP 269
+ G+ R PGL P ++L + D PGPP G P
Sbjct: 1084 GNPGE------RGPPGKPGLSSLLSP---GDINLLAKDVCNDCPPGPPGLPGLP 1128
>gi|42475970 synapse defective 1, Rho GTPase, homolog 1 [Homo
sapiens]
Length = 735
Score = 47.0 bits (110), Expect = 5e-05
Identities = 65/252 (25%), Positives = 94/252 (37%), Gaps = 52/252 (20%)
Query: 148 KRRGDQRDLGHPGPPPKVSKASHDPLVPNSSPLPTNGISGSPESFASSLDGSGHAGPEGS 207
+++ D ++ GHP P+ S +P P S G S SPE+ S G+ E S
Sbjct: 21 RKKSDAKERGHPAQRPEPSPPEPEPQAPEGSQAGAEGPS-SPEASRSPARGAYLQSLEPS 79
Query: 208 RLERDENDKHSGKIPVNAVRPHTSSPGLGKPPGPCLQPKASVLQQLDRVDETPGPPHPKG 267
G P PG G+P G + D P P P G
Sbjct: 80 ----SRRWVLGGAKPAEDTSLGPGVPGTGEPAGEIWY------NPIPEEDPRPPAPEPPG 129
Query: 268 PPRCSFSPRNSRHEGSFARQQSLYAPKGSVPSPSPRPQALDATQVPSPLPLAQPSTPPVR 327
P P ++ EG AP+G+ P+ P A++ SP P R
Sbjct: 130 P-----QPGSAESEG--------LAPQGAAPASPP----TKASRTKSP--------GPAR 164
Query: 328 RLELLPSAESPVCWLEQPESHQRLAGPGCKAG-----LSPAEPLLSRAGFSPDSS-KADS 381
RL + + PE +RL+ G +AG +PA ++SR + DSS
Sbjct: 165 RLSIKMK--------KLPELRRRLSLRGPRAGRERERAAPAGSVISR--YHLDSSVGGPG 214
Query: 382 DAASSGGSDSKK 393
AA GG+ S +
Sbjct: 215 PAAGPGGTRSPR 226
Score = 30.0 bits (66), Expect = 6.3
Identities = 40/165 (24%), Positives = 52/165 (31%), Gaps = 10/165 (6%)
Query: 145 GSRKRRGDQRDLGHPGPPPKVSKASHDPLVPNSSPLPTNGISGSPESFASSLDGSGHAGP 204
GS + G P PP +KAS SP P +S + GP
Sbjct: 133 GSAESEGLAPQGAAPASPP--TKASR-----TKSPGPARRLSIKMKKLPELRRRLSLRGP 185
Query: 205 EGSRLERDENDKHSGKIPVNAVRPHTSSPGLGKPPGPCLQPKASVLQQLDRVDETPGPPH 264
R ER+ I + PG PG P+A L D + GPP
Sbjct: 186 RAGR-ERERAAPAGSVISRYHLDSSVGGPGPAAGPGGTRSPRAGYLSDGDSPERPAGPPS 244
Query: 265 PKGPPRCSFSPRNSRHEGSFARQQS--LYAPKGSVPSPSPRPQAL 307
P P + + S LY G P+P P+ L
Sbjct: 245 PTSFRPYEVGPAARAPPAALWGRLSLHLYGLGGLRPAPGATPRDL 289
>gi|124430752 kinesin family member 26B [Homo sapiens]
Length = 2108
Score = 47.0 bits (110), Expect = 5e-05
Identities = 52/182 (28%), Positives = 72/182 (39%), Gaps = 27/182 (14%)
Query: 168 ASHDPLVPNSSPLPTNGISGSPESFASSLDGSGHAGPEGSRLERDENDKHSGKI-----P 222
A P + P + SP S + D G EG R+ + + K+ P
Sbjct: 952 AQFGPEQASRGPRLSQAAGASPLSESDKEDN----GSEGQLTNREGPELPASKMQRSHSP 1007
Query: 223 VNAVRP-HTSSPGLGKP-PGPCLQPKASVLQQ----------LDRVDETPGPPHPKGPPR 270
V A P H+ SP + PG Q AS L Q L+ G P P G PR
Sbjct: 1008 VPAAAPAHSPSPASPRSVPGSSSQHSASPLVQSPSLQSSRESLNSCGFVEGKPRPMGSPR 1067
Query: 271 CSFSPRNSRHE----GSFARQQSLYAPKGSVPSPSPRPQALDATQVPSPLPLAQPS--TP 324
+ + E S +++ +Y KG +PSP+P P + + V S L QP TP
Sbjct: 1068 LGIASLSKTSEYKPPSSPSQRCKVYTQKGVLPSPAPLPPSSKDSGVASRESLLQPEVRTP 1127
Query: 325 PV 326
PV
Sbjct: 1128 PV 1129
>gi|32964830 collagen, type VIII, alpha 2 [Homo sapiens]
Length = 703
Score = 46.6 bits (109), Expect = 7e-05
Identities = 72/276 (26%), Positives = 92/276 (33%), Gaps = 59/276 (21%)
Query: 96 GLAGATGSANGGAHNCRPEVGAAGPPRSIHDLKSRNDLQRLPGQRLDRLGSRKRRGDQRD 155
GL G G A + +G AGPP L + PG R G RGDQ
Sbjct: 106 GLHGQPGPAGPPGFS---RMGKAGPP----GLPGKVGPPGQPGLR----GEPGIRGDQGL 154
Query: 156 LGHPGPPPKVSKASHDPLVPNSSPLPTNGISGS-----PESFASSLDGSGHAGPEGSRLE 210
G PGPP +P S + G G+ P F G GP G R
Sbjct: 155 RGPPGPPG----------LPGPSGITIPGKPGAQGVPGPPGFQGEPGPQGEPGPPGDRGL 204
Query: 211 RDENDKHSGKIPVNAVRPHTSSPGLGKPPGPCLQPKASVLQQ--LDRVDETPGPPHPKGP 268
+ +N +P +PG G PGP P + L + LD + PG GP
Sbjct: 205 KGDNGVGQPGLP--------GAPGQGGAPGPPGLPGPAGLGKPGLDGLPGAPGDKGESGP 256
Query: 269 PRCSFSPRNSRHEGSFARQQSLYAPKGSVPSPSPR-PQALDATQVPSPLPLAQPSTPPVR 327
P + P+G + P+ P +D VP L P P
Sbjct: 257 P-------------------GVPGPRGEPGAVGPKGPPGVDGVGVPGAAGLPGPQGPSGA 297
Query: 328 RLELLPSAESPVCWLEQPESHQRLAGPGCKAGLSPA 363
+ E P P L P + PG K PA
Sbjct: 298 KGE--PGTRGPP-GLIGPTGYGMPGLPGPKGDRGPA 330
Score = 35.8 bits (81), Expect = 0.12
Identities = 54/207 (26%), Positives = 70/207 (33%), Gaps = 43/207 (20%)
Query: 96 GLAGATGSANG-GAHNCRPEVGAAGPPRSIHDLKSRNDLQRLPGQRLDR--------LGS 146
G+ GA G G + E G GPP I + + LPG + DR LG
Sbjct: 281 GVPGAAGLPGPQGPSGAKGEPGTRGPPGLIGP--TGYGMPGLPGPKGDRGPAGVPGLLGD 338
Query: 147 RKRRGDQRDLGHPGPPPKVSKASHDPLVPNSSPLPTNGISGSPESFASSLDGSGHAGPEG 206
R G+ + G GP P +P S+ LP G G P G AGP
Sbjct: 339 RGEPGEDGEPGEQGP----QGLGGPPGLPGSAGLP--GRRGPPGP-------KGEAGP-- 383
Query: 207 SRLERDENDKHSGKIPVNAVRPHTSSPGLGKPPGPCLQPKASVLQQLDRVDETPGPPHPK 266
G V +R GL PG + + L PGP PK
Sbjct: 384 -----------GGPPGVPGIRGDQGPSGLAGKPGVPGE------RGLPGAHGPPGPTGPK 426
Query: 267 GPPRCSFSPRNSRHEGSFARQQSLYAP 293
G P + P G+ ++ L P
Sbjct: 427 GEPGFTGRPGGPGVAGALGQKGDLGLP 453
Score = 35.8 bits (81), Expect = 0.12
Identities = 53/205 (25%), Positives = 67/205 (32%), Gaps = 41/205 (20%)
Query: 85 EPAHQHEAALRGLAGATGSAN----GGAHNCRPEVGAAGPPRSIHDLKSRNDLQRLPGQR 140
EP Q L G G GSA G + E G GPP +PG R
Sbjct: 347 EPGEQGPQGLGGPPGLPGSAGLPGRRGPPGPKGEAGPGGPPG-------------VPGIR 393
Query: 141 LDRLGSRKRRGDQRDLGHPGPPPKVS-KASHDPLVPNSSPLPTNGISGSP--ESFASSLD 197
D+ G G PG P + +H P P + P G +G P A +L
Sbjct: 394 GDQ-------GPSGLAGKPGVPGERGLPGAHGPPGP-TGPKGEPGFTGRPGGPGVAGALG 445
Query: 198 GSGHAGPEGSRLERDENDKHSGKIPVNAVRPH-----TSSPGLGKPPGPCLQPKASV--- 249
G G G R + + P + P PGL PPG +
Sbjct: 446 QKGDLGLPGQPGLRGPSGIPGLQGPAGPIGPQGLPGLKGEPGLPGPPGEGRAGEPGTAGP 505
Query: 250 -----LQQLDRVDETPGPPHPKGPP 269
+ + PGPP P GPP
Sbjct: 506 TGPPGVPGSPGITGPPGPPGPPGPP 530
Score = 34.3 bits (77), Expect = 0.34
Identities = 49/178 (27%), Positives = 59/178 (33%), Gaps = 38/178 (21%)
Query: 94 LRGLAGATGSANG-GAHNCRPEVGAAGPPRSIHDLKSRNDLQRLPGQRLDRLGSRKRRGD 152
+RG G +G A G R GA GPP K PG G G
Sbjct: 392 IRGDQGPSGLAGKPGVPGERGLPGAHGPPGPTGP-KGEPGFTGRPGGP----GVAGALGQ 446
Query: 153 QRDLGHPGPPPKVSKASHDPLVPNSSPLPTNGISG-SPESFASSLDGSGHAGPEGSRLER 211
+ DLG PG P + L + P+ G+ G E G G AG G+
Sbjct: 447 KGDLGLPGQPGLRGPSGIPGLQGPAGPIGPQGLPGLKGEPGLPGPPGEGRAGEPGT---- 502
Query: 212 DENDKHSGKIPVNAVRPHTSSPGLGKPPGPCLQPKASVLQQLDRVDETPGPPHPKGPP 269
+G V SPG+ PPGP PGPP P G P
Sbjct: 503 ------AGPTGPPGV---PGSPGITGPPGP------------------PGPPGPPGAP 533
Score = 31.6 bits (70), Expect = 2.2
Identities = 70/271 (25%), Positives = 84/271 (30%), Gaps = 33/271 (12%)
Query: 95 RGLAGATGSANGGAHNCRPEVGAAGPPRSIHDLKSRNDLQRLPGQR-LDRLGSRKRRGDQ 153
RGL G G G + GA GPP LPG L + G G
Sbjct: 202 RGLKGDNGVGQPGLPGAPGQGGAPGPP-------------GLPGPAGLGKPGLDGLPGAP 248
Query: 154 RDLGHPGPPPKVSKASHDPLVPNSSPLPTNGISGSPESFASSLDGSGHAGPEGSRLERDE 213
D G GPP V P +G+ G P +G GP+G + E
Sbjct: 249 GDKGESGPPGVPGPRGEPGAVGPKGPPGVDGV-GVP-------GAAGLPGPQGPSGAKGE 300
Query: 214 NDKHSGKIPVNAVRP-HTSSPGLGKPPGPCLQPKASVLQQLDRVDE--TPGPPHPKGPPR 270
P + P PGL P G + A V L E G P +GP
Sbjct: 301 PGTRG---PPGLIGPTGYGMPGLPGPKGD--RGPAGVPGLLGDRGEPGEDGEPGEQGPQG 355
Query: 271 CSFSPRNSRHEGSFARQQSLYAPKGSV-PSPSPRPQALDATQVPSPLPLAQPSTPPVRRL 329
P G R + PKG P P + Q PS L +P P R L
Sbjct: 356 LGGPPGLPGSAGLPGR-RGPPGPKGEAGPGGPPGVPGIRGDQGPSGL-AGKPGVPGERGL 413
Query: 330 ELLPSAESPVCWLEQPESHQRLAGPGCKAGL 360
P +P R GPG L
Sbjct: 414 PGAHGPPGPTGPKGEPGFTGRPGGPGVAGAL 444
>gi|209571537 proline-rich protein BstNI subfamily 2 [Homo sapiens]
Length = 416
Score = 46.6 bits (109), Expect = 7e-05
Identities = 50/185 (27%), Positives = 61/185 (32%), Gaps = 13/185 (7%)
Query: 145 GSRKRRGDQRDLGHP-GPPPKVSKASHDPLVPNSSPL---PTNGISGSPESFASSLDGSG 200
G K + + G P GPPP+ P P P P G G
Sbjct: 228 GDNKSQSARSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPP 287
Query: 201 HAGPEGSRLERDENDKHSGKIPVNAVRPHTSSPGLGKPPGPCLQPKASVLQQLDRVDETP 260
G SR R K G P +P P GKP GP P+ ++ P
Sbjct: 288 PQGGSKSRSSRSPPGKPQGPPPQGGNQPQGPPPPPGKPQGP--PPQGG-----NKPQGPP 340
Query: 261 GPPHPKGPPRCSFSPRNSRHEGSFARQQSLYAPKGSVPSPSPRPQALDATQVPSPLPLAQ 320
P P+GPP S S + Q +G+ P P P A Q P P Q
Sbjct: 341 PPGKPQGPPPQGGSKSRSARSPP-GKPQGPPQQEGNNPQ-GPPPPAGGNPQQPQAPPAGQ 398
Query: 321 PSTPP 325
P PP
Sbjct: 399 PQGPP 403
Score = 45.8 bits (107), Expect = 1e-04
Identities = 55/203 (27%), Positives = 69/203 (33%), Gaps = 21/203 (10%)
Query: 148 KRRGDQRDLGHP-GPPPKVSKASHDPLVPNSSPL---PTNGISGSPESFASSLDGSGHAG 203
K R + G P GPPP+ P P P P G G G
Sbjct: 107 KSRSPRSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQG 166
Query: 204 PEGSRLERDENDKHSGKIPVNAVRPHTSSPGLGKPPGPCLQPKASVLQQLDRVDETPGPP 263
SR R K G P +P P GKP GP P+ ++ P P
Sbjct: 167 DNKSRSSRSPPGKPQGPPPQGGNQPQGPPPPPGKPQGP--PPQGG-----NKPQGPPPPG 219
Query: 264 HPKGPP----RCSFSPRNSRHEGSFARQQSLYAPKGSVPSP----SPRPQALDATQVPSP 315
P+GPP S S R+ + Q P+G P P P PQ + Q P
Sbjct: 220 KPQGPPPQGDNKSQSARSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQ--GP 277
Query: 316 LPLAQPSTPPVRRLELLPSAESP 338
P +P PP + S+ SP
Sbjct: 278 PPPGKPQGPPPQGGSKSRSSRSP 300
Score = 38.5 bits (88), Expect = 0.018
Identities = 43/158 (27%), Positives = 58/158 (36%), Gaps = 16/158 (10%)
Query: 188 SPESFASSLDGSGHAGPEGSRLERDENDKHSGKIPVNAVRPHTSSPGLGKPPGPCLQPKA 247
SP A + G+ G + K G P +P P GKP GP P+
Sbjct: 28 SPSLIAGNPQGAPPQGGNKPQGPPSPPGKPQGPPPQGGNQPQGPPPPPGKPQGP--PPQG 85
Query: 248 SVLQQLDRVDETPGPPHPKGPP---RCSFSPRNSRHEGSFARQQSLYAPKGSVPSP---- 300
++ P P P+GPP S SPR+ + Q P+G P P
Sbjct: 86 G-----NKPQGPPPPGKPQGPPPQGDKSRSPRSPPGKPQGPPPQGGNQPQGPPPPPGKPQ 140
Query: 301 SPRPQALDATQVPSPLPLAQPSTPPVRRLELLPSAESP 338
P PQ + Q P P +P PP + S+ SP
Sbjct: 141 GPPPQGGNKPQ--GPPPPGKPQGPPPQGDNKSRSSRSP 176
>gi|29725624 collagen, type XXIII, alpha 1 [Homo sapiens]
Length = 540
Score = 46.6 bits (109), Expect = 7e-05
Identities = 56/192 (29%), Positives = 73/192 (38%), Gaps = 35/192 (18%)
Query: 118 AGPPRSIHDLKSRNDLQRLPGQRLDRL-----------------GSRKRRGDQRDLGHPG 160
AGPP ++ D + L+RL ++LD L G RRG G PG
Sbjct: 78 AGPPGAL-DAWAEPHLERLLREKLDGLAKIRTAREAPSECVCPPGPPGRRGKPGRRGDPG 136
Query: 161 PPPKVSKASHD-PLVPNSSP-LP-TNGISGSPESFA----SSLDGS----GHAGPEGSRL 209
PP + + + PL + P LP G G+P F DG+ G GP G+R
Sbjct: 137 PPGQSGRDGYPGPLGLDGKPGLPGPKGEKGAPGDFGPRGDQGQDGAAGPPGPPGPPGARG 196
Query: 210 ERDENDKHSGKIPVNAVRP-----HTSSPGLGKPPGPCLQPKASVLQQLDRVDETPGPPH 264
+ K + P G PPGP +P + D PGPP
Sbjct: 197 PPGDTGKDGPRGAQGPAGPKGEPGQDGEMGPKGPPGPKGEPGVPGKKGDDGTPSQPGPPG 256
Query: 265 PKGPPRCSFSPR 276
PKG P S PR
Sbjct: 257 PKGEPG-SMGPR 267
Score = 32.3 bits (72), Expect = 1.3
Identities = 52/198 (26%), Positives = 67/198 (33%), Gaps = 22/198 (11%)
Query: 85 EPAHQHEAALRGLAGATGSANGGAHNCRPEVGAAGPPRSIHDLKSRND---LQRLPGQRL 141
EP G+ GA G H R GAAGP R LK + G+ L
Sbjct: 260 EPGSMGPRGENGVDGAPGPKGEPGH--RGTDGAAGP-RGAPGLKGEQGDTVVIDYDGRIL 316
Query: 142 DRLGSRKRRGDQRDLGHPGPP--PKVSKASHDPLVPN----SSPLPTNGISGSP-----E 190
D L +G G PGPP P P P P G G P +
Sbjct: 317 DAL-----KGPPGPQGPPGPPGIPGAKGELGLPGAPGIDGEKGPKGQKGDPGEPGPAGLK 371
Query: 191 SFASSLDGSGHAGPEGSRLERDENDKHSGKIPVNAVRPHTSSPGLGKPPGPCLQPKASVL 250
A + SG G +G + E+ E+ S + + + PG PPGP
Sbjct: 372 GEAGEMGLSGLPGADGLKGEKGESASDSLQESLAQLIVEPGPPGPPGPPGPMGLQGIQGP 431
Query: 251 QQLDRVDETPGPPHPKGP 268
+ LD G +GP
Sbjct: 432 KGLDGAKGEKGASGERGP 449
>gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens]
Length = 2944
Score = 46.2 bits (108), Expect = 9e-05
Identities = 82/331 (24%), Positives = 102/331 (30%), Gaps = 36/331 (10%)
Query: 91 EAALRGLAGATGSANGGAHNCRPEVGAAGPPRSIHDLKSRNDLQRLPGQRLDRLGSRKRR 150
E LRG G G P G GPP S R PG R GS R
Sbjct: 1261 EMGLRGQVGPPGDPGLPGRTGAP--GPQGPPGSATAKGERG----FPGAD-GRPGSPGRA 1313
Query: 151 GDQRDLGHPG-------PPPKVSKASHDPLVPNSSP-LPTNGISGSPESFASSLDGSGHA 202
G+ G PG P P+ P P P P I G G +
Sbjct: 1314 GNPGTPGAPGLKGSPGLPGPRGDPGERGPRGPKGEPGAPGQVIGGEGPGLPGRKGDPGPS 1373
Query: 203 GPEGSRLER-DENDKHSGKIPVNAVRPHTSSPGLGKPPGPCLQPKASVLQQLDRVDETPG 261
GP G R D + +P A++ G PPGP A L + +PG
Sbjct: 1374 GPPGPRGPLGDPGPRGPPGLPGTAMKGDKGDRGERGPPGPGEGGIAPGEPGLPGLPGSPG 1433
Query: 262 PPHPKGPPRCSFSPRNSR--------HEGSFARQ-----QSLYAPKGSVPSPSPRPQALD 308
P P GPP +S GS Q PKG P P +A +
Sbjct: 1434 PQGPVGPPGKKGEKGDSEDGAPGLPGQPGSPGEQGPRGPPGAIGPKGDRGFPGPLGEAGE 1493
Query: 309 ATQVPSPLPLAQPSTPPVRRLELLPSAESPVCWLEQPESHQRLAGPGCKAGLSPAEPLLS 368
+ P P P V P A+ P E P G + G ++
Sbjct: 1494 KGERGPPGPAGSRGLPGVAG---RPGAKGP----EGPPGPTGRQGEKGEPGRPGDPAVVG 1546
Query: 369 RAGFSPDSSKADSDAASSGGSDSKKKKRYRP 399
A P K D A G+ + +R P
Sbjct: 1547 PAVAGPKGEKGDVGPAGPRGATGVQGERGPP 1577
Score = 40.0 bits (92), Expect = 0.006
Identities = 84/361 (23%), Positives = 108/361 (29%), Gaps = 60/361 (16%)
Query: 89 QHEAALRGLAGATGSANGGAHNCRPEVGAAGPPRSIHDLKSRNDLQRLPGQ-----RLDR 143
Q + L+G G TG G VG GPP L LPGQ +
Sbjct: 2200 QGPSGLKGEPGETGPPGRGLTGPTGAVGLPGPP-GPSGLVGPQGSPGLPGQVGETGKPGA 2258
Query: 144 LGSRKRRGDQRDLGHPGPPPKVSKASHDPLVPNSSPLPT-------------NGISGSPE 190
G G D G PG P S P+ P P PT G G+P
Sbjct: 2259 PGRDGASGKDGDRGSPGVPG--SPGLPGPVGPKGEPGPTGAPGQAVVGLPGAKGEKGAPG 2316
Query: 191 SFASSLDG----SGHAGPEGSRLERDENDK--------HSGKIPVNAVRPHTSSPGLGKP 238
A L G G G G R E+ E + G+ + PG+G P
Sbjct: 2317 GLAGDLVGEPGAKGDRGLPGPRGEKGEAGRAGEPGDPGEDGQKGAPGPKGFKGDPGVGVP 2376
Query: 239 PGPCLQPKASVLQQLDRVDETPGPPHPKGPPRCSFSPRNSRHEGSFARQQSLYAPKG--S 296
P V L + PG P G P PR + + ++ L P G
Sbjct: 2377 GSPGPPGPPGVKGDLG-LPGLPGAPGVVGFPG-QTGPRGEMGQPGPSGERGLAGPPGREG 2434
Query: 297 VPSPSPRPQALDATQVPS---------------PLPLAQPSTPPVRRLELLPSAESPVCW 341
+P P P + P P P + P +R + P E P
Sbjct: 2435 IPGPLGPPGPPGSVGPPGASGLKGDKGDPGVGLPGPRGERGEPGIRGEDGRPGQEGPRGL 2494
Query: 342 LEQPESHQR------LAGPGCKAGLSPAEPLLSRAGFSPDSSKADSDAASSGGSDSKKKK 395
P S + G K + +L G P +K D G D K
Sbjct: 2495 TGPPGSRGERGEKGDVGSAGLKGDKGDSAVILGPPG--PRGAKGDMGERGPRGLDGDKGP 2552
Query: 396 R 396
R
Sbjct: 2553 R 2553
Score = 37.0 bits (84), Expect = 0.052
Identities = 51/196 (26%), Positives = 70/196 (35%), Gaps = 42/196 (21%)
Query: 85 EPAHQHEAALRGLAGATG-SANGGAHNCRPEVGAAGPPRSIHDLKSRNDL-----QRLPG 138
EP + A L GL G G GA + G+ G + D+ + L G
Sbjct: 2567 EPGDKGSAGLPGLRGLLGPQGQPGAAGIPGDPGSPGKDGVPGIRGEKGDVGFMGPRGLKG 2626
Query: 139 QRLDRLGSRKRRGDQRDLGHPGPPPKVSKASH-----DPLVPNSSPLP-TNGISGSPESF 192
+R + G+ G++ D G GPP + A H +P VP S P G+ G
Sbjct: 2627 ERGVK-GACGLDGEKGDKGEAGPPGRPGLAGHKGEMGEPGVPGQSGAPGKEGLIGP---- 2681
Query: 193 ASSLDGSGHAGPEGSRLERDENDKHSGKIPVNAVRPHTSSPGLGKPPGPCLQPKASVLQQ 252
G GP+G + E+ E +PG+G PGP
Sbjct: 2682 KGDRGFDGQPGPKGDQGEKGER----------------GTPGIGGFPGP---------SG 2716
Query: 253 LDRVDETPGPPHPKGP 268
D PGPP GP
Sbjct: 2717 NDGSAGPPGPPGSVGP 2732
Score = 36.6 bits (83), Expect = 0.068
Identities = 36/137 (26%), Positives = 53/137 (38%), Gaps = 5/137 (3%)
Query: 151 GDQRDLGHPGPPPKVSKASHDPLVPNSSPLPTNGISGSP-ESFASSLDGS-GHAGPEGSR 208
G++ D G PGPP V D V G G P ++ L G+ G GP G +
Sbjct: 1613 GEKGDPGRPGPPGPVGPRGRDGEVGEKGDEGPPGDPGLPGKAGERGLRGAPGVRGPVGEK 1672
Query: 209 LERDE--NDKHSGKIPVNAVRPHTSSPGLGKPPGPCLQPKASVLQQLDRVDE-TPGPPHP 265
++ + D +G + + PG PPG + ++ + D GP P
Sbjct: 1673 GDQGDPGEDGRNGSPGSSGPKGDRGEPGPPGPPGRLVDTGPGAREKGEPGDRGQEGPRGP 1732
Query: 266 KGPPRCSFSPRNSRHEG 282
KG P +P EG
Sbjct: 1733 KGDPGLPGAPGERGIEG 1749
Score = 36.2 bits (82), Expect = 0.089
Identities = 62/248 (25%), Positives = 83/248 (33%), Gaps = 48/248 (19%)
Query: 95 RGLAGATGSANGGAHNCRPEVGAAGPPRSIHDLKSRNDLQRLPGQRLDRL--------GS 146
+G G TGS G E G G P S+ ++ + + L + GS
Sbjct: 1912 KGDRGETGSK--GEQGLPGERGLRGEPGSVPNVDRLLETAGIKASALREIVETWDESSGS 1969
Query: 147 -----RKRRGDQRDLGHPGPPPKVSKASH-----------DP--------LVPNSSPLPT 182
+RRG + D G GPP K DP + P
Sbjct: 1970 FLPVPERRRGPKGDSGEQGPPGKEGPIGFPGERGLKGDRGDPGPQGPPGLALGERGPPGP 2029
Query: 183 NGISGSP-----ESFASSLDGSGHAGPEGSRLERDENDKHSGKIPVNAVRPHTSSPGLGK 237
+G++G P G G AG G R ER E G+ PG
Sbjct: 2030 SGLAGEPGKPGIPGLPGRAGGVGEAGRPGERGERGE----KGERGEQGRDGPPGLPGTPG 2085
Query: 238 PPGPCLQPKASVLQQLDRVDETPGPPHPKGPPRCSFSPRNSRHEGSFARQQSLYAPKGSV 297
PPGP PK SV + + GPP KG P ++ +G + + KG
Sbjct: 2086 PPGP-PGPKVSVDEPGPGLSGEQGPPGLKG---AKGEPGSNGDQGP-KGDRGVPGIKGDR 2140
Query: 298 PSPSPRPQ 305
P PR Q
Sbjct: 2141 GEPGPRGQ 2148
Score = 33.9 bits (76), Expect = 0.44
Identities = 50/184 (27%), Positives = 62/184 (33%), Gaps = 46/184 (25%)
Query: 95 RGLAGATGSANGGAHNCRPEVGAAGPP-----RSIHDLKSRNDLQRLPGQRLDRLGSRKR 149
RG G G A E G GPP R + + R + G G R
Sbjct: 1482 RGFPGPLGEAG--------EKGERGPPGPAGSRGLPGVAGRPGAKGPEGPP----GPTGR 1529
Query: 150 RGDQRDLGHPGPPPKVSKASHDPL-----VPNSSPLPTNGISGSPESFASSLDGSGHAGP 204
+G++ + G PG P V A P V + P G+ G E L G GP
Sbjct: 1530 QGEKGEPGRPGDPAVVGPAVAGPKGEKGDVGPAGPRGATGVQG--ERGPPGLVLPGDPGP 1587
Query: 205 EGSRLERDENDKHSGKIPVNAVRPHTSSPGLGKPPGPCLQPKASVLQQLDRVDETPGPPH 264
+G D D+ G I + PG PPG P PGPP
Sbjct: 1588 KG-----DPGDR--GPIGLTG---RAGPPGDSGPPGEKGDP------------GRPGPPG 1625
Query: 265 PKGP 268
P GP
Sbjct: 1626 PVGP 1629
Score = 30.8 bits (68), Expect = 3.7
Identities = 52/212 (24%), Positives = 67/212 (31%), Gaps = 56/212 (26%)
Query: 85 EPAHQHEAALRGLAGATGSANGGAHNCRPEVGAAGPPRSIHDLKSRNDLQRLPGQ--RLD 142
+P +A RGL GA G R VG G Q PG+ R
Sbjct: 1647 DPGLPGKAGERGLRGAPG--------VRGPVGEKGD-------------QGDPGEDGRNG 1685
Query: 143 RLGSRKRRGDQRDLGHPGPPPKV--------------SKASHDPLVPNSSPLPTNGISGS 188
GS +GD+ + G PGPP ++ + P P P G+ G+
Sbjct: 1686 SPGSSGPKGDRGEPGPPGPPGRLVDTGPGAREKGEPGDRGQEGPRGPKGDP----GLPGA 1741
Query: 189 P-----ESFASSLDGSGHAGPEGSRLERDENDKHSGKIPVNAVRPHTSSPGLGKPPGP-- 241
P E F G G G E+ + G ++ PG P GP
Sbjct: 1742 PGERGIEGFRGPPGPQGDPGVRGPAGEKGDR----GPPGLDGRSGLDGKPGAAGPSGPNG 1797
Query: 242 ----CLQPKASVLQQLDRVDETPGPPHPKGPP 269
P L L PGP P G P
Sbjct: 1798 AAGKAGDPGRDGLPGLRGEQGLPGPSGPPGLP 1829
>gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Homo
sapiens]
Length = 1487
Score = 45.8 bits (107), Expect = 1e-04
Identities = 65/247 (26%), Positives = 85/247 (34%), Gaps = 28/247 (11%)
Query: 92 AALRGLAGATGS-ANGGAHNCRPEVGAAGPPRSIHDLKSRNDLQRLPGQRLDRLGSRKRR 150
+ +GL G G GG + G AG P + R PG+R GS +
Sbjct: 662 SGFQGLPGPPGPPGEGGKPGDQGVPGEAGAPGLVGPRGERG----FPGER----GSPGAQ 713
Query: 151 GDQRDLGHPGPPPKVS-KASHDPLVPNSSPLPTNGISGSPESFASSLDGSGHAGPEGSRL 209
G Q G PG P K + P P + P G+ G P +G AGP+G R
Sbjct: 714 GLQGPRGLPGTPGTDGPKGASGPAGPPGAQGPP-GLQGMP----GERGAAGIAGPKGDRG 768
Query: 210 ERDEND------KHSGKIPVNAVRPHTSSPGLGK-----PPGPCLQPKASVLQQLDRVDE 258
+ E K G+ + P + G+ PPGP A
Sbjct: 769 DVGEKGPEGAPGKDGGRGLTGPIGPPGPAGANGEKGEVGPPGPAGSAGARGAPGERGETG 828
Query: 259 TPGPPHPKGPPRCSFSPRNSRHEGSFARQQSLYAPKGSVPSPSPRPQALDATQVPSPLPL 318
PGP GPP P +G ++ AP PS +P PQ T V P
Sbjct: 829 PPGPAGFAGPPGADGQPGAKGEQGEAGQKGDAGAPGPQGPSGAPGPQG--PTGVTGPKGA 886
Query: 319 AQPSTPP 325
PP
Sbjct: 887 RGAQGPP 893
Score = 40.8 bits (94), Expect = 0.004
Identities = 58/210 (27%), Positives = 70/210 (33%), Gaps = 36/210 (17%)
Query: 89 QHEAALRGLAGATGSAN-GGAHNCRPEVGAAGPPRSIHDLKSRNDLQRLPGQRLDRLGSR 147
Q EA +G AGA G GA + G GP K Q PG G+
Sbjct: 851 QGEAGQKGDAGAPGPQGPSGAPGPQGPTGVTGP-------KGARGAQGPPGAT-GFPGAA 902
Query: 148 KRRGDQRDLGHPGPPPKVSKASHDPLVPNSSPLPTNGISGSPESFASSLDGSGHAGPEGS 207
R G G+PGPP + D P G SG P A G AGP G
Sbjct: 903 GRVGPPGSNGNPGPPGPPGPSGKD------GPKGARGDSGPPGR-AGEPGLQGPAGPPGE 955
Query: 208 RLERDENDKHSGKIP--------------VNAVRPHTSSPGLGKPPGPCLQPKASVLQQL 253
+ E ++ + P + R PGL PGP +P Q
Sbjct: 956 KGEPGDDGPSGAEGPPGPQGLAGQRGIVGLPGQRGERGFPGL---PGPSGEPGK---QGA 1009
Query: 254 DRVDETPGPPHPKGPPRCSFSPRNSRHEGS 283
GPP P GPP + EGS
Sbjct: 1010 PGASGDRGPPGPVGPPGLTGPAGEPGREGS 1039
Score = 38.5 bits (88), Expect = 0.018
Identities = 59/252 (23%), Positives = 84/252 (33%), Gaps = 20/252 (7%)
Query: 95 RGLAGATGSANGGAHNCRPEVGAAGPPRSIHDLKSRNDLQRLPGQRLDR--------LGS 146
RG G G+A ++ +P G AGPP + PG + + G+
Sbjct: 332 RGRTGPAGAAGARGNDGQP--GPAGPPGPVGPAGGPG-FPGAPGAKGEAGPTGARGPEGA 388
Query: 147 RKRRGDQRDLGHPGPPPKVSKASHDPLVPNSSPLPTNGISGSPESFASSLDGSGHAGPEG 206
+ RG+ G PGP D + GI+G+P F G GP+G
Sbjct: 389 QGPRGEPGTPGSPGPAGASGNPGTDGIPGAKGSAGAPGIAGAP-GFPGP---RGPPGPQG 444
Query: 207 SRLERDENDKHSGKIPVNAVRPHTSSPGLGKPPGPCLQPKASVLQQLDRVDETPGPPHPK 266
+ + +G+ + + G P GP P + + PG P
Sbjct: 445 ATGPLGPKGQ-TGEPGIAGFKGEQGPKGEPGPAGPQGAPGPAGEEGKRGARGEPGGVGPI 503
Query: 267 GPPRCSFSPRNSRHEGSFARQQSLYAPKGSVPSPSPRPQALDATQVPSPLPLAQPSTPPV 326
GPP +P N F Q L PKG+ P A P +P P
Sbjct: 504 GPPGERGAPGNR----GFPGQDGLAGPKGAPGERGPSGLAGPKGANGDPGRPGEPGLPGA 559
Query: 327 RRLELLPSAESP 338
R L P P
Sbjct: 560 RGLTGRPGDAGP 571
Score = 35.4 bits (80), Expect = 0.15
Identities = 54/196 (27%), Positives = 64/196 (32%), Gaps = 39/196 (19%)
Query: 86 PAHQHEAALRGLAGATGSANG-GAHNCRPEVGAAGPPRSIHDLKSRNDLQRL-PGQRLDR 143
P A ++G G TG+ GA G AGP D + P
Sbjct: 1046 PGRDGAAGVKGDRGETGAVGAPGAPGPPGSPGPAGPTGKQGDRGEAGAQGPMGPSGPAGA 1105
Query: 144 LGSRKRRGDQRDLGHPGPPPKVSKASHDPLVPNSSPLPTNGISGSPESFASSLD--GSGH 201
G + +G + D G G P + H G+ G P S D SG
Sbjct: 1106 RGIQGPQGPRGDKGEAGEPGERGLKGHRGFT---------GLQGLPGPPGPSGDQGASGP 1156
Query: 202 AGPEGSRLERDENDKHSGKIPVNAVRPHTSSPGLGKPPGPCLQPKASVLQQLDRVDET-- 259
AGP G R SGK N + PG PPGP R ET
Sbjct: 1157 AGPSGPRGPPGPVGP-SGKDGANGI------PGPIGPPGP-----------RGRSGETGP 1198
Query: 260 ------PGPPHPKGPP 269
PGPP P GPP
Sbjct: 1199 AGPPGNPGPPGPPGPP 1214
Score = 35.0 bits (79), Expect = 0.20
Identities = 45/174 (25%), Positives = 63/174 (36%), Gaps = 32/174 (18%)
Query: 95 RGLAGATGSAN-GGAHNCRPEVGAAGPPRSIHDLKSRNDLQRLPGQRLDRLGSRKRRGDQ 153
+G G G A G + E G AGP Q PG + G R RG+
Sbjct: 452 KGQTGEPGIAGFKGEQGPKGEPGPAGP-------------QGAPGPAGEE-GKRGARGEP 497
Query: 154 RDLGHPGPPPKVSKASHDPLVPNSSPLPTNGISGSPESFASSLDGSGHAGPEGSRLERDE 213
+G GPP + P + P P+ SG AGP+G+ +
Sbjct: 498 GGVGPIGPPGERG-------APGNRGFPGQDGLAGPKGAPGERGPSGLAGPKGA----NG 546
Query: 214 NDKHSGKIPVNAVRPHTSSPGLGKPPGPCLQPKASVLQQLDRVDETPGPPHPKG 267
+ G+ + R T PG P G + P + + D PGPP P+G
Sbjct: 547 DPGRPGEPGLPGARGLTGRPGDAGPQGK-VGPSGAPGE-----DGRPGPPGPQG 594
Score = 31.6 bits (70), Expect = 2.2
Identities = 26/90 (28%), Positives = 29/90 (32%), Gaps = 24/90 (26%)
Query: 184 GISGSPESFASSLDGSGHAGPEGSRLER----DENDKHSGKIPVNAVRPHTSSPGLGKPP 239
G G P + G GP+G E+ D DK P R PG P
Sbjct: 104 GQKGEPGDIKDIVGPKGPPGPQGPAGEQGPRGDRGDKGEKGAP--GPRGRDGEPGTPGNP 161
Query: 240 GPCLQPKASVLQQLDRVDETPGPPHPKGPP 269
GP PGPP P GPP
Sbjct: 162 GP------------------PGPPGPPGPP 173
Score = 30.8 bits (68), Expect = 3.7
Identities = 41/161 (25%), Positives = 57/161 (35%), Gaps = 26/161 (16%)
Query: 116 GAAGPPRSIHDLKSRNDLQRLPGQRLDRLGSRKRRGDQRDLGHPGPPPKVSKASHDPLVP 175
G G P I D+ G ++ G R RGD+ + G PGP + +P P
Sbjct: 104 GQKGEPGDIKDIVGPKGPPGPQGPAGEQ-GPRGDRGDKGEKGAPGPRGR----DGEPGTP 158
Query: 176 -NSSPLPTNGISGSP---ESFASSLDGSGHAGPEGSRLERDENDKHSGKIPVNAVRPHTS 231
N P G G P +FA+ + G D+ +G + ++
Sbjct: 159 GNPGPPGPPGPPGPPGLGGNFAAQMAGG--------------FDEKAGGAQLGVMQGPMG 204
Query: 232 SPGLGKPPGPCLQPKASVLQQLDRVDETP---GPPHPKGPP 269
G PPGP P Q P GP P+GPP
Sbjct: 205 PMGPRGPPGPAGAPGPQGFQGNPGEPGEPGVSGPMGPRGPP 245
>gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Homo
sapiens]
Length = 1418
Score = 45.8 bits (107), Expect = 1e-04
Identities = 65/247 (26%), Positives = 85/247 (34%), Gaps = 28/247 (11%)
Query: 92 AALRGLAGATGS-ANGGAHNCRPEVGAAGPPRSIHDLKSRNDLQRLPGQRLDRLGSRKRR 150
+ +GL G G GG + G AG P + R PG+R GS +
Sbjct: 593 SGFQGLPGPPGPPGEGGKPGDQGVPGEAGAPGLVGPRGERG----FPGER----GSPGAQ 644
Query: 151 GDQRDLGHPGPPPKVS-KASHDPLVPNSSPLPTNGISGSPESFASSLDGSGHAGPEGSRL 209
G Q G PG P K + P P + P G+ G P +G AGP+G R
Sbjct: 645 GLQGPRGLPGTPGTDGPKGASGPAGPPGAQGPP-GLQGMP----GERGAAGIAGPKGDRG 699
Query: 210 ERDEND------KHSGKIPVNAVRPHTSSPGLGK-----PPGPCLQPKASVLQQLDRVDE 258
+ E K G+ + P + G+ PPGP A
Sbjct: 700 DVGEKGPEGAPGKDGGRGLTGPIGPPGPAGANGEKGEVGPPGPAGSAGARGAPGERGETG 759
Query: 259 TPGPPHPKGPPRCSFSPRNSRHEGSFARQQSLYAPKGSVPSPSPRPQALDATQVPSPLPL 318
PGP GPP P +G ++ AP PS +P PQ T V P
Sbjct: 760 PPGPAGFAGPPGADGQPGAKGEQGEAGQKGDAGAPGPQGPSGAPGPQG--PTGVTGPKGA 817
Query: 319 AQPSTPP 325
PP
Sbjct: 818 RGAQGPP 824
Score = 40.8 bits (94), Expect = 0.004
Identities = 58/210 (27%), Positives = 70/210 (33%), Gaps = 36/210 (17%)
Query: 89 QHEAALRGLAGATGSAN-GGAHNCRPEVGAAGPPRSIHDLKSRNDLQRLPGQRLDRLGSR 147
Q EA +G AGA G GA + G GP K Q PG G+
Sbjct: 782 QGEAGQKGDAGAPGPQGPSGAPGPQGPTGVTGP-------KGARGAQGPPGAT-GFPGAA 833
Query: 148 KRRGDQRDLGHPGPPPKVSKASHDPLVPNSSPLPTNGISGSPESFASSLDGSGHAGPEGS 207
R G G+PGPP + D P G SG P A G AGP G
Sbjct: 834 GRVGPPGSNGNPGPPGPPGPSGKD------GPKGARGDSGPPGR-AGEPGLQGPAGPPGE 886
Query: 208 RLERDENDKHSGKIP--------------VNAVRPHTSSPGLGKPPGPCLQPKASVLQQL 253
+ E ++ + P + R PGL PGP +P Q
Sbjct: 887 KGEPGDDGPSGAEGPPGPQGLAGQRGIVGLPGQRGERGFPGL---PGPSGEPGK---QGA 940
Query: 254 DRVDETPGPPHPKGPPRCSFSPRNSRHEGS 283
GPP P GPP + EGS
Sbjct: 941 PGASGDRGPPGPVGPPGLTGPAGEPGREGS 970
Score = 38.5 bits (88), Expect = 0.018
Identities = 59/252 (23%), Positives = 84/252 (33%), Gaps = 20/252 (7%)
Query: 95 RGLAGATGSANGGAHNCRPEVGAAGPPRSIHDLKSRNDLQRLPGQRLDR--------LGS 146
RG G G+A ++ +P G AGPP + PG + + G+
Sbjct: 263 RGRTGPAGAAGARGNDGQP--GPAGPPGPVGPAGGPG-FPGAPGAKGEAGPTGARGPEGA 319
Query: 147 RKRRGDQRDLGHPGPPPKVSKASHDPLVPNSSPLPTNGISGSPESFASSLDGSGHAGPEG 206
+ RG+ G PGP D + GI+G+P F G GP+G
Sbjct: 320 QGPRGEPGTPGSPGPAGASGNPGTDGIPGAKGSAGAPGIAGAP-GFPGP---RGPPGPQG 375
Query: 207 SRLERDENDKHSGKIPVNAVRPHTSSPGLGKPPGPCLQPKASVLQQLDRVDETPGPPHPK 266
+ + +G+ + + G P GP P + + PG P
Sbjct: 376 ATGPLGPKGQ-TGEPGIAGFKGEQGPKGEPGPAGPQGAPGPAGEEGKRGARGEPGGVGPI 434
Query: 267 GPPRCSFSPRNSRHEGSFARQQSLYAPKGSVPSPSPRPQALDATQVPSPLPLAQPSTPPV 326
GPP +P N F Q L PKG+ P A P +P P
Sbjct: 435 GPPGERGAPGNR----GFPGQDGLAGPKGAPGERGPSGLAGPKGANGDPGRPGEPGLPGA 490
Query: 327 RRLELLPSAESP 338
R L P P
Sbjct: 491 RGLTGRPGDAGP 502
Score = 35.4 bits (80), Expect = 0.15
Identities = 54/196 (27%), Positives = 64/196 (32%), Gaps = 39/196 (19%)
Query: 86 PAHQHEAALRGLAGATGSANG-GAHNCRPEVGAAGPPRSIHDLKSRNDLQRL-PGQRLDR 143
P A ++G G TG+ GA G AGP D + P
Sbjct: 977 PGRDGAAGVKGDRGETGAVGAPGAPGPPGSPGPAGPTGKQGDRGEAGAQGPMGPSGPAGA 1036
Query: 144 LGSRKRRGDQRDLGHPGPPPKVSKASHDPLVPNSSPLPTNGISGSPESFASSLD--GSGH 201
G + +G + D G G P + H G+ G P S D SG
Sbjct: 1037 RGIQGPQGPRGDKGEAGEPGERGLKGHRGFT---------GLQGLPGPPGPSGDQGASGP 1087
Query: 202 AGPEGSRLERDENDKHSGKIPVNAVRPHTSSPGLGKPPGPCLQPKASVLQQLDRVDET-- 259
AGP G R SGK N + PG PPGP R ET
Sbjct: 1088 AGPSGPRGPPGPVGP-SGKDGANGI------PGPIGPPGP-----------RGRSGETGP 1129
Query: 260 ------PGPPHPKGPP 269
PGPP P GPP
Sbjct: 1130 AGPPGNPGPPGPPGPP 1145
Score = 35.0 bits (79), Expect = 0.20
Identities = 45/174 (25%), Positives = 63/174 (36%), Gaps = 32/174 (18%)
Query: 95 RGLAGATGSAN-GGAHNCRPEVGAAGPPRSIHDLKSRNDLQRLPGQRLDRLGSRKRRGDQ 153
+G G G A G + E G AGP Q PG + G R RG+
Sbjct: 383 KGQTGEPGIAGFKGEQGPKGEPGPAGP-------------QGAPGPAGEE-GKRGARGEP 428
Query: 154 RDLGHPGPPPKVSKASHDPLVPNSSPLPTNGISGSPESFASSLDGSGHAGPEGSRLERDE 213
+G GPP + P + P P+ SG AGP+G+ +
Sbjct: 429 GGVGPIGPPGERG-------APGNRGFPGQDGLAGPKGAPGERGPSGLAGPKGA----NG 477
Query: 214 NDKHSGKIPVNAVRPHTSSPGLGKPPGPCLQPKASVLQQLDRVDETPGPPHPKG 267
+ G+ + R T PG P G + P + + D PGPP P+G
Sbjct: 478 DPGRPGEPGLPGARGLTGRPGDAGPQGK-VGPSGAPGE-----DGRPGPPGPQG 525
Score = 31.6 bits (70), Expect = 2.2
Identities = 26/90 (28%), Positives = 29/90 (32%), Gaps = 24/90 (26%)
Query: 184 GISGSPESFASSLDGSGHAGPEGSRLER----DENDKHSGKIPVNAVRPHTSSPGLGKPP 239
G G P + G GP+G E+ D DK P R PG P
Sbjct: 35 GQKGEPGDIKDIVGPKGPPGPQGPAGEQGPRGDRGDKGEKGAP--GPRGRDGEPGTPGNP 92
Query: 240 GPCLQPKASVLQQLDRVDETPGPPHPKGPP 269
GP PGPP P GPP
Sbjct: 93 GP------------------PGPPGPPGPP 104
Score = 30.8 bits (68), Expect = 3.7
Identities = 41/161 (25%), Positives = 57/161 (35%), Gaps = 26/161 (16%)
Query: 116 GAAGPPRSIHDLKSRNDLQRLPGQRLDRLGSRKRRGDQRDLGHPGPPPKVSKASHDPLVP 175
G G P I D+ G ++ G R RGD+ + G PGP + +P P
Sbjct: 35 GQKGEPGDIKDIVGPKGPPGPQGPAGEQ-GPRGDRGDKGEKGAPGPRGR----DGEPGTP 89
Query: 176 -NSSPLPTNGISGSP---ESFASSLDGSGHAGPEGSRLERDENDKHSGKIPVNAVRPHTS 231
N P G G P +FA+ + G D+ +G + ++
Sbjct: 90 GNPGPPGPPGPPGPPGLGGNFAAQMAGG--------------FDEKAGGAQLGVMQGPMG 135
Query: 232 SPGLGKPPGPCLQPKASVLQQLDRVDETP---GPPHPKGPP 269
G PPGP P Q P GP P+GPP
Sbjct: 136 PMGPRGPPGPAGAPGPQGFQGNPGEPGEPGVSGPMGPRGPP 176
>gi|239754940 PREDICTED: hypothetical protein [Homo sapiens]
Length = 159
Score = 45.8 bits (107), Expect = 1e-04
Identities = 42/137 (30%), Positives = 59/137 (43%), Gaps = 16/137 (11%)
Query: 234 GLGKPPGPCLQPKASVLQQLDRVDETPGPPHPKGPPRCSFSPRNSRHEGSFARQQSLYAP 293
G+G+P G CL A V+ LD + P HP P + R S + R++S P
Sbjct: 26 GVGEPGGFCLPGPALVVAGLDGIRPAPAAAHPPAPRERPAAARLSALAAAQPRRRS-PGP 84
Query: 294 K----GSVPSPSP---RPQ---ALDATQVPSPLPLAQPSTPPVRRLELLPSAES--PVCW 341
+ G + SP P +P+ A+ A P PLP S PP +P+A+S P W
Sbjct: 85 QGGGGGDIASPLPPALQPRGAPAVPAAPSPGPLPARPSSPPPSPPSPPVPTAQSSLPAPW 144
Query: 342 LEQPESHQRLAGPGCKA 358
P R P +A
Sbjct: 145 ---PPQGPRSPAPSLRA 158
Score = 32.0 bits (71), Expect = 1.7
Identities = 30/106 (28%), Positives = 42/106 (39%), Gaps = 13/106 (12%)
Query: 223 VNAVRPHTSSPGLGKPPGPCLQPKASVLQQLDRVD---ETPGPPHPKGPPRCSFSPRNSR 279
++ +RP +P PP P +P A+ L L +PGP G S P +
Sbjct: 45 LDGIRP---APAAAHPPAPRERPAAARLSALAAAQPRRRSPGPQGGGGGDIASPLPPALQ 101
Query: 280 HEGSFARQQSLYAPKGSVPSPSP-RPQALDATQVPSPLPLAQPSTP 324
G+ A P P P P RP + + P+P AQ S P
Sbjct: 102 PRGAPA------VPAAPSPGPLPARPSSPPPSPPSPPVPTAQSSLP 141
>gi|73486666 alpha 1 type IX collagen isoform 1 precursor [Homo
sapiens]
Length = 921
Score = 45.8 bits (107), Expect = 1e-04
Identities = 60/228 (26%), Positives = 75/228 (32%), Gaps = 36/228 (15%)
Query: 96 GLAGATGSANG-GAHNCRPEVGAAG----PPRSIHDLKSRNDLQRLPGQ--RLDRLGSRK 148
GL G GS G+ + E G G P R I LPG+ R+ +G
Sbjct: 326 GLTGPDGSPGSIGSKGQKGEPGVPGSRGFPGRGIPGPPGPPGTAGLPGELGRVGPVGDPG 385
Query: 149 RRGDQRDLGHPGPPPKVSKASHDPLVPNSSPLPTNGISGSP--------ESFASSLDGSG 200
RRG G PGP + DPL PN+ P +G G P + G
Sbjct: 386 RRGPPGPPGPPGPRGTIGFHDGDPLCPNACPPGRSGYPGLPGMRGHKGAKGEIGEPGRQG 445
Query: 201 HAGPEGSRLERDENDKHS--------GKIPVNAVRPHTSSPGLGKPPGPCLQPKASVLQQ 252
H G EG + E E G + + + GL PGP P A
Sbjct: 446 HKGEEGDQGELGEVGAQGPPGAQGLRGITGIVGDKGEKGARGLDGEPGPQGLPGA----- 500
Query: 253 LDRVDETPGPPHPKGPPRCSFSPRNSRHEGSFARQQSLYAPKGSVPSP 300
PG +GPP P+ R L PKG P
Sbjct: 501 -------PGDQGQRGPPG-EAGPKGDRGAEGARGIPGLPGPKGDTGLP 540
Score = 43.1 bits (100), Expect = 7e-04
Identities = 56/198 (28%), Positives = 75/198 (37%), Gaps = 37/198 (18%)
Query: 95 RGLAGATGSANGGAHNCRPEVGAAGPPRSIHDLKSRNDLQRLPGQRLDRLGSRKRRGDQR 154
+GL G+ G VG+ G P + L S L LPG G +GD+
Sbjct: 621 QGLPGSRGELG--------PVGSPGLPGKLGSLGSPG-LPGLPGPP----GLPGMKGDRG 667
Query: 155 DLGHPGPPPKVSKASHDPLVPNSSPLPTNGISGSPESFASSLDGSGHAGPEGSR-LERDE 213
+G PGP + + + L G+ G P+ A + G GPEGSR L E
Sbjct: 668 VVGEPGPKGEQGASGEEGEAGERGELGDIGLPG-PKGSAGNPGEPGLRGPEGSRGLPGVE 726
Query: 214 NDKHS-GKIPVNAVRPHTSSPGLGKPPGP----------CL----QPKASVLQQLDRVDE 258
+ G V + T PG+ PPG C+ + A + L R D
Sbjct: 727 GPRGPPGPRGVQGEQGATGLPGVQGPPGRAPTDQHIKQVCMRVIQEHFAEMAASLKRPDS 786
Query: 259 -------TPGPPHPKGPP 269
PGPP P GPP
Sbjct: 787 GATGLPGRPGPPGPPGPP 804
Score = 32.7 bits (73), Expect = 0.98
Identities = 41/179 (22%), Positives = 55/179 (30%), Gaps = 33/179 (18%)
Query: 107 GAHNCRPEVGAAGPPRSIHDLKSRNDLQRLPGQR-----------LDRLGSRKRRGDQRD 155
G H+ P A PP R+ LPG R R G + GDQ +
Sbjct: 403 GFHDGDPLCPNACPP-------GRSGYPGLPGMRGHKGAKGEIGEPGRQGHKGEEGDQGE 455
Query: 156 LGH---PGPPPKVSKASHDPLVPNSSPLPTNGISGSP--ESFASSLDGSGHAGPEGSRLE 210
LG GPP +V + G+ G P + + G GP G
Sbjct: 456 LGEVGAQGPPGAQGLRGITGIVGDKGEKGARGLDGEPGPQGLPGAPGDQGQRGPPGEAGP 515
Query: 211 RDENDKHSGKIPVNAVRPHTSSPGLGKPPGPCLQPKASVLQQLDRVDETPGPPHPKGPP 269
+ + + PGL P G P + + T G P GPP
Sbjct: 516 KGDRGAEGAR----------GIPGLPGPKGDTGLPGVDGRDGIPGMPGTKGEPGKPGPP 564
Score = 31.2 bits (69), Expect = 2.8
Identities = 50/198 (25%), Positives = 66/198 (33%), Gaps = 25/198 (12%)
Query: 85 EPAHQHEAALRGLAGATGSANG-GAHNCRPEVGAAG-------PPRSIHDLKSRNDLQRL 136
EP + RGL G G G + E GA G P R+ D + R+
Sbjct: 710 EPGLRGPEGSRGLPGVEGPRGPPGPRGVQGEQGATGLPGVQGPPGRAPTDQHIKQVCMRV 769
Query: 137 PGQRLDRLGSRKRRGDQRDLGHPGPPPKVSKASHDPLVPNSSPLPTN-GISGSPESFASS 195
+ + + +R D G PG P P P + P GI G P
Sbjct: 770 IQEHFAEMAASLKRPDSGATGLPGRPGPPGP----PGPPGENGFPGQMGIRGLP-GIKGP 824
Query: 196 LDGSGHAGPEGSRLERDENDKHSGKIPVNAVRPHTSSPGLGKPPGPCLQPKASVLQQLDR 255
G GP+G E+ E P + GL PGP + + +R
Sbjct: 825 PGALGLRGPKGDLGEKGERGP-----PGRGPNGLPGAIGLPGDPGPASYGRNG--RDGER 877
Query: 256 ----VDETPGPPHPKGPP 269
V PG P P GPP
Sbjct: 878 GPPGVAGIPGVPGPPGPP 895
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.311 0.130 0.386
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,530,493
Number of Sequences: 37866
Number of extensions: 1842419
Number of successful extensions: 11032
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 835
Number of HSP's that attempted gapping in prelim test: 8185
Number of HSP's gapped (non-prelim): 2748
length of query: 600
length of database: 18,247,518
effective HSP length: 108
effective length of query: 492
effective length of database: 14,157,990
effective search space: 6965731080
effective search space used: 6965731080
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 65 (29.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.