Guide to the Human Genome
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Name: AGBL1 Sequence: fasta or formatted (1066aa) NCBI GI: 120444924
Description:

ATP/GTP binding protein-like 1

Referenced in:

Carboxypeptidases

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.9         74           3
 C cysteine            2.8         30           1
 D aspartate           5.2         55           3
 E glutamate           5.8         62           3
 F phenylalanine       4.0         43           2
 G glycine             5.0         53           2
 H histidine           3.5         37           3
 I isoleucine          4.1         44           2
 K lysine              5.1         54           2
 L leucine            11.3        120           3
 M methionine          2.3         25           2
 N asparagine          3.9         42           1
 P proline             5.0         53           3
 Q glutamine           4.6         49           2
 R arginine            5.5         59           2
 S serine              8.3         89           2
 T threonine           5.5         59           2
 V valine              6.3         67           3
 W tryptophan          1.1         12           1
 Y tyrosine            3.7         39           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   ATP/GTP binding protein-like 1 
AGTPBP1               0.319   ATP/GTP binding protein 1 
AGBL3                 0.145   carboxypeptidase 3, cytosolic 
AGBL2                 0.135   carboxypeptidase 2, cytosolic 
AGBL4                 0.087   ATP/GTP binding protein-like 4 
AGBL5                 0.050   ATP/GTP binding protein-like 5 isoform 1 
AGBL5                 0.050   ATP/GTP binding protein-like 5 isoform 3 
SETD1B                0.007   SET domain containing 1B 
CASZ1                 0.007   castor homolog 1, zinc finger isoform a 
ATAD2                 0.006   ATPase family, AAA domain containing 2 
HDAC5                 0.006   histone deacetylase 5 isoform 3 
HDAC5                 0.006   histone deacetylase 5 isoform 1 
NBPF6                 0.005   neuroblastoma breakpoint family, member 6 isoform 2...
NBPF6                 0.005   neuroblastoma breakpoint family, member 6 isoform 1...
NCL                   0.005   nucleolin 
NBPF4                 0.005   neuroblastoma breakpoint family, member 4 
LOC100291923          0.005   PREDICTED: hypothetical protein XP_002344991 
LOC100287346          0.005   PREDICTED: hypothetical protein XP_002343486 
ANP32B                0.005   acidic (leucine-rich) nuclear phosphoprotein 32 famil...
GTF2A1                0.005   TFIIA alpha, p55 isoform 2 
GTF2A1                0.005   TFIIA alpha, p55 isoform 1 
RBM28                 0.005   RNA binding motif protein 28 
ZBTB7C                0.005   zinc finger and BTB domain containing 7C 
LOC647020             0.004   PREDICTED: similar to acidic (leucine-rich) nuclear...
LOC647020             0.004   PREDICTED: similar to acidic (leucine-rich) nuclear...
MAK16                 0.004   MAK16 homolog 
EPB41L1               0.004   erythrocyte membrane protein band 4.1-like 1 isoform...
MYT1L                 0.004   myelin transcription factor 1-like 
APBB1                 0.004   amyloid beta A4 precursor protein-binding, family B, ...
APBB1                 0.004   amyloid beta A4 precursor protein-binding, family B,...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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