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Search of human proteins with 24308117
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|24308117 GTP binding protein 5 [Homo sapiens]
(406 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|24308117 GTP binding protein 5 [Homo sapiens] 822 0.0
gi|111955139 GTP-binding protein 10 isoform 2 [Homo sapiens] 201 1e-51
gi|111955063 GTP-binding protein 10 isoform 1 [Homo sapiens] 148 1e-35
gi|4758796 developmentally regulated GTP binding protein 1 [Homo... 75 8e-14
gi|58761500 Obg-like ATPase 1 isoform 1 [Homo sapiens] 63 4e-10
gi|4557537 developmentally regulated GTP binding protein 2 [Homo... 62 7e-10
gi|55953087 G protein-binding protein CRFG [Homo sapiens] 49 8e-06
gi|24307899 Era-like 1 [Homo sapiens] 42 8e-04
gi|193082991 GTP binding protein 3 (mitochondrial) isoform V [Ho... 40 0.003
gi|193082988 GTP binding protein 3 (mitochondrial) isoform IV [H... 40 0.003
gi|19923979 ADP-ribosylation factor-like 11 [Homo sapiens] 40 0.005
gi|109255251 loricrin [Homo sapiens] 39 0.008
gi|193082993 GTP binding protein 3 (mitochondrial) isoform III [... 37 0.025
gi|148612885 ADP-ribosylation factor-like 2 [Homo sapiens] 37 0.042
gi|9506611 guanine nucleotide binding protein-like 3 (nucleolar)... 37 0.042
gi|33598956 ADP-ribosylation factor-like 2-like 1 isoform 1 [Hom... 34 0.21
gi|7705827 SAR1a gene homolog 2 [Homo sapiens] 33 0.60
gi|75709204 SAR1a gene homolog 2 [Homo sapiens] 33 0.60
gi|140161500 ankyrin repeat and sterile alpha motif domain conta... 33 0.60
gi|195972866 keratin 10 [Homo sapiens] 32 0.79
gi|41327767 ADP-ribosylation factor-like 4D [Homo sapiens] 32 0.79
gi|223029424 large subunit GTPase 1 [Homo sapiens] 32 1.0
gi|40068464 AT rich interactive domain 1B (SWI1-like) isoform 2 ... 32 1.3
gi|148612801 KIAA1009 protein [Homo sapiens] 32 1.3
gi|40068466 AT rich interactive domain 1B (SWI1-like) isoform 1 ... 32 1.3
gi|40068462 AT rich interactive domain 1B (SWI1-like) isoform 3 ... 32 1.3
gi|23510368 homeobox D11 [Homo sapiens] 31 1.8
gi|93277113 GTP_binding protein [Homo sapiens] 31 2.3
gi|113430177 PREDICTED: hypothetical protein [Homo sapiens] 30 3.0
gi|187761373 ariadne ubiquitin-conjugating enzyme E2 binding pro... 30 3.0
>gi|24308117 GTP binding protein 5 [Homo sapiens]
Length = 406
Score = 822 bits (2122), Expect = 0.0
Identities = 406/406 (100%), Positives = 406/406 (100%)
Query: 1 MAPARCFSARLRTVFQGVGHWALSTWAGLKPSRLLPQRASPRLLSVGRADLAKHQELPGK 60
MAPARCFSARLRTVFQGVGHWALSTWAGLKPSRLLPQRASPRLLSVGRADLAKHQELPGK
Sbjct: 1 MAPARCFSARLRTVFQGVGHWALSTWAGLKPSRLLPQRASPRLLSVGRADLAKHQELPGK 60
Query: 61 KLLSEKKLKRYFVDYRRVLVCGGNGGAGASCFHSEPRKEFGGPDGGDGGNGGHVILRVDQ 120
KLLSEKKLKRYFVDYRRVLVCGGNGGAGASCFHSEPRKEFGGPDGGDGGNGGHVILRVDQ
Sbjct: 61 KLLSEKKLKRYFVDYRRVLVCGGNGGAGASCFHSEPRKEFGGPDGGDGGNGGHVILRVDQ 120
Query: 121 QVKSLSSVLSRYQGFSGEDGGSKNCFGRSGAVLYIRVPVGTLVKEGGRVVADLSCVGDEY 180
QVKSLSSVLSRYQGFSGEDGGSKNCFGRSGAVLYIRVPVGTLVKEGGRVVADLSCVGDEY
Sbjct: 121 QVKSLSSVLSRYQGFSGEDGGSKNCFGRSGAVLYIRVPVGTLVKEGGRVVADLSCVGDEY 180
Query: 181 IAALGGAGGKGNRFFLANNNRAPVTCTPGQPGQQRVLHLELKTVAHAGMVGFPNAGKSSL 240
IAALGGAGGKGNRFFLANNNRAPVTCTPGQPGQQRVLHLELKTVAHAGMVGFPNAGKSSL
Sbjct: 181 IAALGGAGGKGNRFFLANNNRAPVTCTPGQPGQQRVLHLELKTVAHAGMVGFPNAGKSSL 240
Query: 241 LRAISNARPAVASYPFTTLKPHVGIVHYEGHLQIAVADIPGIIRGAHQNRGLGSAFLRHI 300
LRAISNARPAVASYPFTTLKPHVGIVHYEGHLQIAVADIPGIIRGAHQNRGLGSAFLRHI
Sbjct: 241 LRAISNARPAVASYPFTTLKPHVGIVHYEGHLQIAVADIPGIIRGAHQNRGLGSAFLRHI 300
Query: 301 ERCRFLLFVVDLSQPEPWTQVDDLKYELEMYEKGLSARPHAIVANKIDLPEAQANLSQLR 360
ERCRFLLFVVDLSQPEPWTQVDDLKYELEMYEKGLSARPHAIVANKIDLPEAQANLSQLR
Sbjct: 301 ERCRFLLFVVDLSQPEPWTQVDDLKYELEMYEKGLSARPHAIVANKIDLPEAQANLSQLR 360
Query: 361 DHLGQEVIVLSALTGENLEQLLLHLKVLYDAYAEAELGQGRQPLRW 406
DHLGQEVIVLSALTGENLEQLLLHLKVLYDAYAEAELGQGRQPLRW
Sbjct: 361 DHLGQEVIVLSALTGENLEQLLLHLKVLYDAYAEAELGQGRQPLRW 406
>gi|111955139 GTP-binding protein 10 isoform 2 [Homo sapiens]
Length = 387
Score = 201 bits (510), Expect = 1e-51
Identities = 136/360 (37%), Positives = 188/360 (52%), Gaps = 59/360 (16%)
Query: 72 FVDYRRVLVCGGNGGAGASCFHSEPRKEFGGPDGGDGGNGGHV--ILRVDQQVKSLSSVL 129
F+D R+ GG+GG G PR GG+GG GG V + + +K L
Sbjct: 15 FIDKLRLFTRGGSGGMGY------PRL------GGEGGKGGDVWVVAQNRMTLKQLKDRY 62
Query: 130 SRYQGFSGEDGGSKNCF--GRSGAVLYIRVPVG-TLVKEGGRVVADLSCVGDEYIAALGG 186
R + +G SK G G I VPVG ++ E G+++ +L+ D + A GG
Sbjct: 63 PRKRFVAGVGANSKISALKGSKGKDCEIPVPVGISVTDENGKIIGELNKENDRILVAQGG 122
Query: 187 AGGKGNRFFLANNNRAPVTCTPGQPGQQRVLHLELKTVAHAGMVGFPNAGKSSLLRAISN 246
GGK FL GQ+R++HL+LK +A G+VGFPNAGKSSLL +S+
Sbjct: 123 LGGKLLTNFLPLK------------GQKRIIHLDLKLIADVGLVGFPNAGKSSLLSCVSH 170
Query: 247 ARPAVASYPFTTLKPHVGIVHYEGHLQIAVADIPGIIRGAHQNRGLGSAFLRHIERCRFL 306
A+PA+A Y FTTLKP +G + Y QI+VAD+PG+I GAH N+G+G FL+HIER R L
Sbjct: 171 AKPAIADYAFTTLKPELGKIMYSDFKQISVADLPGLIEGAHMNKGMGHKFLKHIERTRQL 230
Query: 307 LFVVDLS--QPEPWTQ-------VDDLKYELEMYEKGLSARPHAIVANKIDLPEAQANLS 357
LFVVD+S Q TQ + L ELE+Y++ L +P + NK+DLP+AQ
Sbjct: 231 LFVVDISGFQLSSHTQYRTAFETIILLTKELELYKEELQTKPALLAVNKMDLPDAQDKFH 290
Query: 358 QLRDHLG---------------------QEVIVLSALTGENLEQLLLHLKVLYDAYAEAE 396
+L L Q +I +SA+TGE +E+L ++ D A E
Sbjct: 291 ELMSQLQNPKDFLHLFEKNMIPERTVEFQHIIPISAVTGEGIEELKNCIRKSLDEQANQE 350
>gi|111955063 GTP-binding protein 10 isoform 1 [Homo sapiens]
Length = 308
Score = 148 bits (373), Expect = 1e-35
Identities = 96/244 (39%), Positives = 131/244 (53%), Gaps = 38/244 (15%)
Query: 184 LGGAGGKGNRFFLANNNRAPVTCTPGQPGQQRVLHLELKTVAHAGMVG-FPNAGKSSLLR 242
LGG GGKG ++ NR + Q + + + VA G FPNAGKSSLL
Sbjct: 35 LGGEGGKGGDVWVVAQNRMTLK-------QLKDRYPRKRFVAGVGANSKFPNAGKSSLLS 87
Query: 243 AISNARPAVASYPFTTLKPHVGIVHYEGHLQIAVADIPGIIRGAHQNRGLGSAFLRHIER 302
+S+A+PA+A Y FTTLKP +G + Y QI+VAD+PG+I GAH N+G+G FL+HIER
Sbjct: 88 CVSHAKPAIADYAFTTLKPELGKIMYSDFKQISVADLPGLIEGAHMNKGMGHKFLKHIER 147
Query: 303 CRFLLFVVDLS--QPEPWTQ-------VDDLKYELEMYEKGLSARPHAIVANKIDLPEAQ 353
R LLFVVD+S Q TQ + L ELE+Y++ L +P + NK+DLP+AQ
Sbjct: 148 TRQLLFVVDISGFQLSSHTQYRTAFETIILLTKELELYKEELQTKPALLAVNKMDLPDAQ 207
Query: 354 ANLSQLRDHLG---------------------QEVIVLSALTGENLEQLLLHLKVLYDAY 392
+L L Q +I +SA+TGE +E+L ++ D
Sbjct: 208 DKFHELMSQLQNPKDFLHLFEKNMIPERTVEFQHIIPISAVTGEGIEELKNCIRKSLDEQ 267
Query: 393 AEAE 396
A E
Sbjct: 268 ANQE 271
Score = 29.3 bits (64), Expect = 6.7
Identities = 22/61 (36%), Positives = 29/61 (47%), Gaps = 13/61 (21%)
Query: 72 FVDYRRVLVCGGNGGAGASCFHSEPRKEFGGPDGGDGGNGGHVILRVDQQVKSLSSVLSR 131
F+D R+ GG+GG G PR GG+GG GG V + V Q +L + R
Sbjct: 15 FIDKLRLFTRGGSGGMG------YPRL------GGEGGKGGDVWV-VAQNRMTLKQLKDR 61
Query: 132 Y 132
Y
Sbjct: 62 Y 62
>gi|4758796 developmentally regulated GTP binding protein 1 [Homo
sapiens]
Length = 367
Score = 75.5 bits (184), Expect = 8e-14
Identities = 51/164 (31%), Positives = 78/164 (47%), Gaps = 26/164 (15%)
Query: 185 GGAGGKGNRFFLANNNRAPVTCTPGQPGQQRVLHLELKTVAHAGMVGFPNAGKSSLLRAI 244
GG GG G F +A A + G VGFP+ GKS+LL +
Sbjct: 48 GGGGGPGEGFDVAKTGDARI-----------------------GFVGFPSVGKSTLLSNL 84
Query: 245 SNARPAVASYPFTTLKPHVGIVHYEGHLQIAVADIPGIIRGAHQNRGLGSAFLRHIERCR 304
+ VA+Y FTTL G++ Y+G +I + D+PGII GA +G G + C
Sbjct: 85 AGVYSEVAAYEFTTLTTVPGVIRYKG-AKIQLLDLPGIIEGAKDGKGRGRQVIAVARTCN 143
Query: 305 FLLFVVDLSQPEPWTQVDDLKYELEMYEKGLSARPHAIVANKID 348
+L V+D+ +P ++ ++ ELE + L+++P I K D
Sbjct: 144 LILIVLDVLKPLGHKKI--IENELEGFGIRLNSKPPNIGFKKKD 185
>gi|58761500 Obg-like ATPase 1 isoform 1 [Homo sapiens]
Length = 396
Score = 63.2 bits (152), Expect = 4e-10
Identities = 40/146 (27%), Positives = 72/146 (49%), Gaps = 19/146 (13%)
Query: 228 GMVGFPNAGKSSLLRAISNARPAVASYPFTTLKPHVGIV------------HYEGHLQIA 275
G+VG PN GKS+ ++N++ + ++PF T+ P+ V +++ +I
Sbjct: 26 GIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIP 85
Query: 276 ----VADIPGIIRGAHQNRGLGSAFLRHIERCRFLLFVVDLSQPEPWTQVD---DLKYEL 328
V DI G+++GAH +GLG+AFL HI C + + + + T V+ D ++
Sbjct: 86 AFLNVVDIAGLVKGAHNGQGLGNAFLSHISACDGIFHLTRAFEDDDITHVEGSVDPIRDI 145
Query: 329 EMYEKGLSARPHAIVANKIDLPEAQA 354
E+ + L + ++ ID E A
Sbjct: 146 EIIHEELQLKDEEMIGPIIDKLEKVA 171
>gi|4557537 developmentally regulated GTP binding protein 2 [Homo
sapiens]
Length = 364
Score = 62.4 bits (150), Expect = 7e-10
Identities = 36/105 (34%), Positives = 57/105 (54%), Gaps = 3/105 (2%)
Query: 225 AHAGMVGFPNAGKSSLLRAISNARPAVASYPFTTLKPHVGIVHYEGHLQIAVADIPGIIR 284
A ++GFP+ GKS+ L +++ ASY FTTL G++ Y+G I + D+PGII
Sbjct: 63 ARVALIGFPSVGKSTFLSLMTSTASEAASYEFTTLTCIPGVIEYKG-ANIQLLDLPGIIE 121
Query: 285 GAHQNRGLGSAFLRHIERCRFLLFVVDLSQPEPWTQVDDLKYELE 329
GA Q +G G + ++ ++D ++ E Q L+ ELE
Sbjct: 122 GAAQGKGRGRQVIAVARTADVIIMMLDATKGE--VQRSLLEKELE 164
>gi|55953087 G protein-binding protein CRFG [Homo sapiens]
Length = 634
Score = 48.9 bits (115), Expect = 8e-06
Identities = 49/164 (29%), Positives = 77/164 (46%), Gaps = 22/164 (13%)
Query: 229 MVGFPNAGKSSLLRAISNARPAVASYPFTTLKPHVGIVHYEGHLQIAVADIPGIIRGAHQ 288
+ G+PN GKSS + ++ A V Y FTT VG + Y+ +L+ V D PGI+ +
Sbjct: 173 LCGYPNVGKSSFINKVTRADVDVQPYAFTTKSLFVGHMDYK-YLRWQVVDTPGILDHPLE 231
Query: 289 NRGL----GSAFLRHIERCRFLLFVVDLSQPEPWTQVDDLKYELEMYEK---GLSARPHA 341
+R L H+ +L+V+DLS+ L+ +LE+++ +P
Sbjct: 232 DRNTIEMQAITALAHLRAA--VLYVMDLSE----QCGHGLREQLELFQNIRPLFINKPLI 285
Query: 342 IVANKIDLPEAQANLSQLRDHL-------GQEVIVLSALTGENL 378
+VANK D+ A LS+ + G VI S LT E +
Sbjct: 286 VVANKCDVKRI-AELSEDDQKIFTDLQSEGFPVIETSTLTEEGV 328
>gi|24307899 Era-like 1 [Homo sapiens]
Length = 437
Score = 42.4 bits (98), Expect = 8e-04
Identities = 45/166 (27%), Positives = 71/166 (42%), Gaps = 16/166 (9%)
Query: 208 PGQPGQQRVLHLELKTVAHAGMVGFPNAGKSSLLRAISNARPAVASYPFTTLKPHVGIVH 267
P P RVL + L +G PNAGKS+L + + S T + V
Sbjct: 105 PDMPENSRVLRVVL--------LGAPNAGKSTLSNQLLGRKVFPVSRKVHTTRCQALGVI 156
Query: 268 YEGHLQIAVADIPGIIRGAHQNR-----GLGSAFLRHIERCRFLLFVVDLSQPEPWTQVD 322
E Q+ + D PGII Q R L + +E ++ +VD+S + WT+ +
Sbjct: 157 TEKETQVILLDTPGIISPGKQKRHHLELSLLEDPWKSMESADLVVVLVDVS--DKWTR-N 213
Query: 323 DLKYELEMYEKGLSARPHAIVANKIDLPEAQANLSQLRDHLGQEVI 368
L +L S P +V NK+D + ++ L +L L + V+
Sbjct: 214 QLSPQLLRCLTKYSQIPSVLVMNKVDCLKQKSVLLELTAALTEGVV 259
>gi|193082991 GTP binding protein 3 (mitochondrial) isoform V [Homo
sapiens]
Length = 492
Score = 40.4 bits (93), Expect = 0.003
Identities = 47/179 (26%), Positives = 71/179 (39%), Gaps = 25/179 (13%)
Query: 221 LKTVAHAGMVGFPNAGKSSLLRAISNARPAVASYPFTTLKPHVGIVHYEGHLQIAVADIP 280
L++ H + G PNAGKSSL+ +S P + + P G + +A P
Sbjct: 246 LRSGVHVVVTGPPNAGKSSLVNLLSRK-------PVSIVSPEPGTTRDVLETPVDLAGFP 298
Query: 281 GIIRG-AHQNRGLGSAFLRHIERCR----------FLLFVVDLSQPEPWTQVDDLKYELE 329
++ A G+G + R R +L DL+ P + + +
Sbjct: 299 VLLSDTAGLREGVGPVEQEGVRRARERLEQADLILAMLDASDLASPSSCNFLATVVASVG 358
Query: 330 MYEKGLSARPHAIVANKIDL--PEAQANLSQLRDHLGQEVIVLSALTGENLEQLLLHLK 386
S++ +V NK DL PE L HL +LS LTGE L+ LL L+
Sbjct: 359 AQSPSDSSQRLLLVLNKSDLLSPEGPGPGPDLPPHL-----LLSCLTGEGLDGLLEALR 412
>gi|193082988 GTP binding protein 3 (mitochondrial) isoform IV [Homo
sapiens]
Length = 524
Score = 40.4 bits (93), Expect = 0.003
Identities = 47/179 (26%), Positives = 71/179 (39%), Gaps = 25/179 (13%)
Query: 221 LKTVAHAGMVGFPNAGKSSLLRAISNARPAVASYPFTTLKPHVGIVHYEGHLQIAVADIP 280
L++ H + G PNAGKSSL+ +S P + + P G + +A P
Sbjct: 278 LRSGVHVVVTGPPNAGKSSLVNLLSRK-------PVSIVSPEPGTTRDVLETPVDLAGFP 330
Query: 281 GIIRG-AHQNRGLGSAFLRHIERCR----------FLLFVVDLSQPEPWTQVDDLKYELE 329
++ A G+G + R R +L DL+ P + + +
Sbjct: 331 VLLSDTAGLREGVGPVEQEGVRRARERLEQADLILAMLDASDLASPSSCNFLATVVASVG 390
Query: 330 MYEKGLSARPHAIVANKIDL--PEAQANLSQLRDHLGQEVIVLSALTGENLEQLLLHLK 386
S++ +V NK DL PE L HL +LS LTGE L+ LL L+
Sbjct: 391 AQSPSDSSQRLLLVLNKSDLLSPEGPGPGPDLPPHL-----LLSCLTGEGLDGLLEALR 444
>gi|19923979 ADP-ribosylation factor-like 11 [Homo sapiens]
Length = 196
Score = 39.7 bits (91), Expect = 0.005
Identities = 43/176 (24%), Positives = 83/176 (47%), Gaps = 28/176 (15%)
Query: 222 KTVAHAGMVGFPNAGKSSLLRAISNARPAVASYPFTTLKPHVGIVHYEGHLQIAVADIPG 281
K A M+G +AGK++LL + V + P T+ +V + GH+ + + D+ G
Sbjct: 10 KAEAQVVMMGLDSAGKTTLLYKL-KGHQLVETLP--TVGFNVEPLKAPGHVSLTLWDVGG 66
Query: 282 IIRGAHQNRGLGSAFLRHIERCRFLLFVVDLSQ----PEPWTQVDDLKYELEMYEKGLSA 337
L +++ ++E L++V+D + PE ++ ++ + + ++
Sbjct: 67 -------QAPLRASWKDYLEGTDILVYVLDSTDEARLPESAAELTEV-----LNDPNMAG 114
Query: 338 RPHAIVANKIDLPEA--------QANLSQLRDHLGQEVIVLSALTGENLEQLLLHL 385
P ++ANK + P+A + +L + +DH E+ SALTGE L + L L
Sbjct: 115 VPFLVLANKQEAPDALPLLKIRNRLSLERFQDHC-WELRGCSALTGEGLPEALQSL 169
>gi|109255251 loricrin [Homo sapiens]
Length = 312
Score = 38.9 bits (89), Expect = 0.008
Identities = 37/122 (30%), Positives = 51/122 (41%), Gaps = 34/122 (27%)
Query: 81 CGG--NGGAGASCFHSE--------PRKEFGGPDGGDGGNGGHVILRVDQQVKSLSSVLS 130
CGG +GG+G+ S+ P+ +GG G GG+GG S S
Sbjct: 196 CGGGSSGGSGSGYVSSQQVTQTSCAPQPSYGGGSSGGGGSGG-------------SGCFS 242
Query: 131 RYQGFSGEDGGSKNCFGRSGAVLYIRVPVGTLVKEGGRVVADLSCVGDEYIAALGGAG-G 189
SG GGS C G S + G ++ GG V S G +++GG+G G
Sbjct: 243 -----SGGGGGSSGCGGGSSG-----IGSGCIISGGGSVCGGGSSGGGGGGSSVGGSGSG 292
Query: 190 KG 191
KG
Sbjct: 293 KG 294
Score = 32.7 bits (73), Expect = 0.60
Identities = 22/70 (31%), Positives = 25/70 (35%), Gaps = 17/70 (24%)
Query: 82 GGNGGAGASCFHSEPRKEFGGPDGG-DGGNGGHVILRVDQQVKSLSSVLSRYQGFSGEDG 140
GG G +G C GG GG GG+GG V +Y G G G
Sbjct: 55 GGGGYSGGGCGGGSSGGGGGGGIGGCGGGSGGSV----------------KYSGGGGSSG 98
Query: 141 GSKNCFGRSG 150
G CF G
Sbjct: 99 GGSGCFSSGG 108
Score = 31.2 bits (69), Expect = 1.8
Identities = 32/137 (23%), Positives = 41/137 (29%), Gaps = 27/137 (19%)
Query: 81 CGGNGGAGASCFHSEPRKEFGGPD-------GGDGGNGGHVILRVDQQVKSLSSVLSRYQ 133
C +GG G+ CF S GG GG G G + Y
Sbjct: 103 CFSSGGGGSGCFSSGGGGSSGGGSGCFSSGGGGSSGGGSGCFSSGGGGFSGQAVQCQSYG 162
Query: 134 GFS--GEDGGSKNCFGRSGAVLYIRVPVGTLVKEGGRVVADLSCVGDEYIAALGGAGGKG 191
G S G GG CF G GG V S G GG+ G
Sbjct: 163 GVSSGGSSGGGSGCFSSGG---------------GGGSVCGYSGGGS---GCGGGSSGGS 204
Query: 192 NRFFLANNNRAPVTCTP 208
++++ +C P
Sbjct: 205 GSGYVSSQQVTQTSCAP 221
>gi|193082993 GTP binding protein 3 (mitochondrial) isoform III
[Homo sapiens]
Length = 471
Score = 37.4 bits (85), Expect = 0.025
Identities = 48/173 (27%), Positives = 67/173 (38%), Gaps = 34/173 (19%)
Query: 221 LKTVAHAGMVGFPNAGKSSLLRAISNARPAVASYPFTTLKPHVGIVHYEGHLQIAVADIP 280
L++ H + G PNAGKSSL+ +S P + + P G + +A P
Sbjct: 246 LRSGVHVVVTGPPNAGKSSLVNLLSRK-------PVSIVSPEPGTTRDVLETPVDLAGFP 298
Query: 281 GIIRG-AHQNRGLG----SAFLRHIERCRFLLFVVDLSQPEPWTQVDDLKYELEMYEKGL 335
++ A G+G R E C FL VV +
Sbjct: 299 VLLSDTAGLREGVGPVEQEGVRRARESCNFLATVV---------------ASVGAQSPSD 343
Query: 336 SARPHAIVANKIDL--PEAQANLSQLRDHLGQEVIVLSALTGENLEQLLLHLK 386
S++ +V NK DL PE L HL +LS LTGE L+ LL L+
Sbjct: 344 SSQRLLLVLNKSDLLSPEGPGPGPDLPPHL-----LLSCLTGEGLDGLLEALR 391
>gi|148612885 ADP-ribosylation factor-like 2 [Homo sapiens]
Length = 184
Score = 36.6 bits (83), Expect = 0.042
Identities = 43/160 (26%), Positives = 76/160 (47%), Gaps = 25/160 (15%)
Query: 229 MVGFPNAGKSSLLRAISNARPAVASYPFTTLKPHVGIVHYEGHLQIAVADIPGIIRGAHQ 288
M+G NAGK+++L+ + S TL ++ + + G ++ + D+ G
Sbjct: 21 MLGLDNAGKTTILKKFNGEDIDTIS---PTLGFNIKTLEHRG-FKLNIWDVGG------- 69
Query: 289 NRGLGSAFLRHIERCRFLLFVVDLSQPEPWTQVDDLKYELE--MYEKGLSARPHAIVANK 346
+ L S + + E L++VVD + + ++ D + EL+ + E+ L+ I ANK
Sbjct: 70 QKSLRSYWRNYFESTDGLIWVVDSADRQ---RMQDCQRELQSLLVEERLAGATLLIFANK 126
Query: 347 IDLPEAQAN--------LSQLRDHLGQEVIVLSALTGENL 378
DLP A ++ L +R H + SA+TGENL
Sbjct: 127 QDLPGALSSNAIREVLELDSIRSH-HWCIQGCSAVTGENL 165
>gi|9506611 guanine nucleotide binding protein-like 3
(nucleolar)-like [Homo sapiens]
Length = 582
Score = 36.6 bits (83), Expect = 0.042
Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 7/74 (9%)
Query: 220 ELKTVAHAGMVGFPNAGKSSLLRAISNARP-AVASYP-FTTLKPHVGIVHYEGHLQIAVA 277
E++T G+VG PN GKSSL+ ++ +R +V + P T V + + I +
Sbjct: 248 EVRTHIRVGVVGLPNVGKSSLINSLKRSRACSVGAVPGITKFMQEVYLDKF-----IRLL 302
Query: 278 DIPGIIRGAHQNRG 291
D PGI+ G + G
Sbjct: 303 DAPGIVPGPNSEVG 316
>gi|33598956 ADP-ribosylation factor-like 2-like 1 isoform 1 [Homo
sapiens]
Length = 428
Score = 34.3 bits (77), Expect = 0.21
Identities = 31/123 (25%), Positives = 54/123 (43%), Gaps = 18/123 (14%)
Query: 229 MVGFPNAGKSSLLRAISNARPAVASYPFTTLKPHVG---IVHYEGHLQIAVADIPGIIRG 285
MVG NAGK++ + I P + P VG I +G ++ + D+ G IR
Sbjct: 26 MVGLDNAGKTATAKGIQGEYP-------EDVAPTVGFSKINLRQGKFEVTIFDLGGGIR- 77
Query: 286 AHQNRGLGSAFLRHIERCRFLLFVVDLSQPEPWTQVDDLKYELEMYEKGLSARPHAIVAN 345
+ + + ++FVVD S E + + E+ + + +S +P ++AN
Sbjct: 78 ------IRGIWKNYYAESYGVIFVVDSSDEERMEETKEAMSEMLRHPR-ISGKPILVLAN 130
Query: 346 KID 348
K D
Sbjct: 131 KQD 133
>gi|7705827 SAR1a gene homolog 2 [Homo sapiens]
Length = 198
Score = 32.7 bits (73), Expect = 0.60
Identities = 41/139 (29%), Positives = 65/139 (46%), Gaps = 21/139 (15%)
Query: 230 VGFPNAGKSSLLRAISNARPAVASYPFTTLKPHVGIVHYEGH-LQIAVADIPGIIRGAH- 287
+G NAGK++LL + + R L HV +H L IA G H
Sbjct: 31 LGLDNAGKTTLLHMLKDDR----------LGQHVPTLHPTSEELTIAGMTFTTFDLGGHV 80
Query: 288 QNRGLGSAFLRHIERCRFLLFVVDLSQPEPWTQVDDLKYELE--MYEKGLSARPHAIVAN 345
Q R + +L I ++F+VD + E ++ + K EL+ M ++ ++ P I+ N
Sbjct: 81 QARRVWKNYLPAING---IVFLVDCADHE---RLLESKEELDSLMTDETIANVPILILGN 134
Query: 346 KIDLPEAQANLSQLRDHLG 364
KID PEA + +LR+ G
Sbjct: 135 KIDRPEAISE-ERLREMFG 152
>gi|75709204 SAR1a gene homolog 2 [Homo sapiens]
Length = 198
Score = 32.7 bits (73), Expect = 0.60
Identities = 41/139 (29%), Positives = 65/139 (46%), Gaps = 21/139 (15%)
Query: 230 VGFPNAGKSSLLRAISNARPAVASYPFTTLKPHVGIVHYEGH-LQIAVADIPGIIRGAH- 287
+G NAGK++LL + + R L HV +H L IA G H
Sbjct: 31 LGLDNAGKTTLLHMLKDDR----------LGQHVPTLHPTSEELTIAGMTFTTFDLGGHV 80
Query: 288 QNRGLGSAFLRHIERCRFLLFVVDLSQPEPWTQVDDLKYELE--MYEKGLSARPHAIVAN 345
Q R + +L I ++F+VD + E ++ + K EL+ M ++ ++ P I+ N
Sbjct: 81 QARRVWKNYLPAING---IVFLVDCADHE---RLLESKEELDSLMTDETIANVPILILGN 134
Query: 346 KIDLPEAQANLSQLRDHLG 364
KID PEA + +LR+ G
Sbjct: 135 KIDRPEAISE-ERLREMFG 152
>gi|140161500 ankyrin repeat and sterile alpha motif domain
containing 1 [Homo sapiens]
Length = 1134
Score = 32.7 bits (73), Expect = 0.60
Identities = 29/86 (33%), Positives = 38/86 (44%), Gaps = 25/86 (29%)
Query: 50 DLAKHQELPG-KKLLSEKKLKRYFVDYRRVLVCGGNGGAGASCFHSEPRKEFGGPDGGDG 108
+ A+ LP +KLLS K+L F GG GG G+ GG GG G
Sbjct: 9 EAARTGHLPAVEKLLSGKRLSSGF---------GGGGGGGS-----------GGGGGGSG 48
Query: 109 GNGGHVILRVDQQVKSLSSVLSRYQG 134
G GG + LSS+LS ++G
Sbjct: 49 GGGG----GLGSSSHPLSSLLSMWRG 70
>gi|195972866 keratin 10 [Homo sapiens]
Length = 584
Score = 32.3 bits (72), Expect = 0.79
Identities = 36/113 (31%), Positives = 40/113 (35%), Gaps = 14/113 (12%)
Query: 89 ASCFHSEPRKEFGGPDGGDGGNGGHVILRVDQQVKSLSSVLSRYQGFSG----EDGGSKN 144
+S +S R GG GG GG GG LR+ SL S GFSG
Sbjct: 7 SSKHYSSSRSGGGGGGGGCGGGGGVSSLRISSSKGSLGGGFSS-GGFSGGSFSRGSSGGG 65
Query: 145 CFGRSGAVLYIRVPVGTLVKEGG---RVVADLSCVGDEYIAALGGAGGKGNRF 194
CFG S G L GG R S G Y + GG G F
Sbjct: 66 CFGGSSG------GYGGLGGFGGGSFRGSYGSSSFGGSYGGSFGGGSFGGGSF 112
>gi|41327767 ADP-ribosylation factor-like 4D [Homo sapiens]
Length = 201
Score = 32.3 bits (72), Expect = 0.79
Identities = 42/154 (27%), Positives = 71/154 (46%), Gaps = 18/154 (11%)
Query: 226 HAGMVGFPNAGKSSLLRAISNARPAVASYP---FTTLKPHVGIVHYEGHLQIAVADIPGI 282
H ++G +AGK+SLL + + V S P F T K V + G + V D
Sbjct: 23 HVVVIGLDSAGKTSLLYRL-KFKEFVQSVPTKGFNTEKIRVPLGGSRG-ITFQVWD---- 76
Query: 283 IRGAHQNRGLGSAFLRHIERCRFLLFVVDLSQPEPWTQVDDLKYELEMYEKGLSAR--PH 340
+ G + R L ++ R R L+FVVD ++ E ++++ K EL + + P
Sbjct: 77 VGGQEKLRPLWRSYTR---RTDGLVFVVDAAEAE---RLEEAKVELHRISRASDNQGVPV 130
Query: 341 AIVANKIDLPEAQANLSQLRDHLGQEVIVLSALT 374
++ANK D P A + +++ L + + LT
Sbjct: 131 LVLANKQDQPGA-LSAAEVEKRLAVRELAAATLT 163
>gi|223029424 large subunit GTPase 1 [Homo sapiens]
Length = 658
Score = 32.0 bits (71), Expect = 1.0
Identities = 20/57 (35%), Positives = 32/57 (56%), Gaps = 5/57 (8%)
Query: 228 GMVGFPNAGKSSLLRAI-SNARPAVASYPFTTLKPHVGIVHYEGHLQIAVADIPGII 283
G+VG+PN GKSS + I N + +V++ P T H ++ E L + D PG++
Sbjct: 390 GLVGYPNVGKSSTINTIMGNKKVSVSATPGHT--KHFQTLYVEPGL--CLCDCPGLV 442
>gi|40068464 AT rich interactive domain 1B (SWI1-like) isoform 2
[Homo sapiens]
Length = 2191
Score = 31.6 bits (70), Expect = 1.3
Identities = 38/139 (27%), Positives = 48/139 (34%), Gaps = 19/139 (13%)
Query: 71 YFVDYRRVLVCGGNGGAGASCFHSEPRKEFGGPDGGDGGNGGHVILRVDQQVKSLSSVLS 130
++ Y R GG GG G GG GG GG GG + ++ +
Sbjct: 239 HYPGYSRPGAGGGGGGGGGG----------GGGSGGGGGGGGAGAGGAGAGAVAAAAAAA 288
Query: 131 RYQGFSGEDGGSKNCFGRSGAVLYIRVP-VGTLVKEGGRVVADLSCVGDEYIAALGGAGG 189
G GG G + R G ++ GG A LS AA G A G
Sbjct: 289 AAAAGGGGGGGYGGSSAGYGVLSSPRQQGGGMMMGPGGGGAASLS------KAAAGSAAG 342
Query: 190 KGNRFFLANNNRAPVTCTP 208
RF A N+ P TP
Sbjct: 343 GFQRF--AGQNQHPSGATP 359
>gi|148612801 KIAA1009 protein [Homo sapiens]
Length = 1403
Score = 31.6 bits (70), Expect = 1.3
Identities = 26/107 (24%), Positives = 51/107 (47%), Gaps = 5/107 (4%)
Query: 300 IERCRFLLFVVDLSQPEPWTQVDDLKYELEMYEKGLSARPHAIVANKIDLPEAQANLSQL 359
+ + RFL VV+ S+P DL EL M +K + I K D + + ++
Sbjct: 763 MHKSRFLSQVVEDSEPTRNQNFTDLLAELRMAQKEKDSLLEDIKRLKQDKQALEVDFEKM 822
Query: 360 RDHLGQEVIVLSALTGENLEQLLLHLKVLYDAYAEAELGQGRQPLRW 406
+ Q ++ +TGE L + +K+L + + + E+ + ++ L+W
Sbjct: 823 KKERDQAKDQIAYVTGEKLYE----IKILEETHKQ-EISRLQKRLQW 864
>gi|40068466 AT rich interactive domain 1B (SWI1-like) isoform 1
[Homo sapiens]
Length = 2231
Score = 31.6 bits (70), Expect = 1.3
Identities = 38/139 (27%), Positives = 48/139 (34%), Gaps = 19/139 (13%)
Query: 71 YFVDYRRVLVCGGNGGAGASCFHSEPRKEFGGPDGGDGGNGGHVILRVDQQVKSLSSVLS 130
++ Y R GG GG G GG GG GG GG + ++ +
Sbjct: 239 HYPGYSRPGAGGGGGGGGGG----------GGGSGGGGGGGGAGAGGAGAGAVAAAAAAA 288
Query: 131 RYQGFSGEDGGSKNCFGRSGAVLYIRVP-VGTLVKEGGRVVADLSCVGDEYIAALGGAGG 189
G GG G + R G ++ GG A LS AA G A G
Sbjct: 289 AAAAGGGGGGGYGGSSAGYGVLSSPRQQGGGMMMGPGGGGAASLS------KAAAGSAAG 342
Query: 190 KGNRFFLANNNRAPVTCTP 208
RF A N+ P TP
Sbjct: 343 GFQRF--AGQNQHPSGATP 359
>gi|40068462 AT rich interactive domain 1B (SWI1-like) isoform 3
[Homo sapiens]
Length = 2178
Score = 31.6 bits (70), Expect = 1.3
Identities = 38/139 (27%), Positives = 48/139 (34%), Gaps = 19/139 (13%)
Query: 71 YFVDYRRVLVCGGNGGAGASCFHSEPRKEFGGPDGGDGGNGGHVILRVDQQVKSLSSVLS 130
++ Y R GG GG G GG GG GG GG + ++ +
Sbjct: 239 HYPGYSRPGAGGGGGGGGGG----------GGGSGGGGGGGGAGAGGAGAGAVAAAAAAA 288
Query: 131 RYQGFSGEDGGSKNCFGRSGAVLYIRVP-VGTLVKEGGRVVADLSCVGDEYIAALGGAGG 189
G GG G + R G ++ GG A LS AA G A G
Sbjct: 289 AAAAGGGGGGGYGGSSAGYGVLSSPRQQGGGMMMGPGGGGAASLS------KAAAGSAAG 342
Query: 190 KGNRFFLANNNRAPVTCTP 208
RF A N+ P TP
Sbjct: 343 GFQRF--AGQNQHPSGATP 359
>gi|23510368 homeobox D11 [Homo sapiens]
Length = 338
Score = 31.2 bits (69), Expect = 1.8
Identities = 30/108 (27%), Positives = 44/108 (40%), Gaps = 11/108 (10%)
Query: 6 CFSARLRTVFQGVGHWALSTWAGLKPSRLLPQRASPRLLSVGRADLAKHQELPGKKLLSE 65
C + G ++ + KPS L Q +S ++ ++LA H + + +
Sbjct: 7 CGQSAASMYLPGCAYYVAPSDFASKPS-FLSQPSSCQMTFPYSSNLAPHVQPVREVAFRD 65
Query: 66 KKLKRYFVDYRRVLVCGGNGGAGASCFHSEPRKEFGGPDGGDGGNGGH 113
L+R YR GG GG A S GGP GG GG GG+
Sbjct: 66 YGLERAKWPYR-----GGGGGGSAGGGSSG-----GGPGGGGGGAGGY 103
>gi|93277113 GTP_binding protein [Homo sapiens]
Length = 334
Score = 30.8 bits (68), Expect = 2.3
Identities = 16/56 (28%), Positives = 31/56 (55%), Gaps = 3/56 (5%)
Query: 330 MYEKGLSARPHAIVANKI---DLPEAQANLSQLRDHLGQEVIVLSALTGENLEQLL 382
++++ L +PH +V NK+ DL E Q + L + VI + + EN++Q++
Sbjct: 68 LFQETLGLKPHLLVLNKMDLADLTEQQKIMQHLEGEGLKNVIFTNCVKDENVKQII 123
>gi|113430177 PREDICTED: hypothetical protein [Homo sapiens]
Length = 2028
Score = 30.4 bits (67), Expect = 3.0
Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 7/64 (10%)
Query: 222 KTVAHAGMVGFPNAGKSSLLRAISNARPAVASYPFTTLKPHVGIVHYEGHLQIAVADIPG 281
K+ AH + P A + +L R S R A+A P T + Y + A+A PG
Sbjct: 567 KSRAHTSLAPTPGALRDALRRDRSPVRRAIAPTPGT-------LSGYRSRARTAIAPTPG 619
Query: 282 IIRG 285
+RG
Sbjct: 620 TLRG 623
>gi|187761373 ariadne ubiquitin-conjugating enzyme E2 binding
protein homolog 1 [Homo sapiens]
Length = 557
Score = 30.4 bits (67), Expect = 3.0
Identities = 16/35 (45%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
Query: 79 LVCGGNGGAGASCFHSEPRKEFGGPDGGDGGNGGH 113
L+CG GG G S P GG GG GG GH
Sbjct: 61 LLCGETGGGGGSALG--PGGGGGGGGGGGGGGPGH 93
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.139 0.421
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,977,292
Number of Sequences: 37866
Number of extensions: 851723
Number of successful extensions: 2759
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 37
Number of HSP's that attempted gapping in prelim test: 2648
Number of HSP's gapped (non-prelim): 121
length of query: 406
length of database: 18,247,518
effective HSP length: 105
effective length of query: 301
effective length of database: 14,271,588
effective search space: 4295747988
effective search space used: 4295747988
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.