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Search of human proteins with 239756030
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239756030 PREDICTED: hypothetical protein [Homo sapiens]
(159 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239756030 PREDICTED: hypothetical protein [Homo sapiens] 355 7e-99
gi|239750584 PREDICTED: hypothetical protein [Homo sapiens] 355 7e-99
gi|239744881 PREDICTED: hypothetical protein XP_002344129 [Homo ... 354 2e-98
gi|239754884 PREDICTED: hypothetical protein XP_002346151 [Homo ... 33 0.13
gi|239749421 PREDICTED: hypothetical protein XP_002347040 [Homo ... 33 0.13
gi|239743557 PREDICTED: hypothetical protein XP_002342892 [Homo ... 33 0.13
gi|222352129 von Willebrand factor A domain containing 5B2 [Homo... 32 0.18
gi|239757289 PREDICTED: hypothetical protein [Homo sapiens] 32 0.30
gi|239751796 PREDICTED: hypothetical protein XP_002348004 [Homo ... 32 0.30
gi|239746287 PREDICTED: hypothetical protein XP_002343724 [Homo ... 32 0.30
gi|31881785 Hermansky-Pudlak syndrome-6 [Homo sapiens] 32 0.30
gi|122937309 leucine rich repeat containing 4B [Homo sapiens] 32 0.30
gi|7524363 paired box 8 isoform PAX8C [Homo sapiens] 31 0.39
gi|38202205 zinc finger, FYVE domain containing 26 [Homo sapiens] 31 0.51
gi|4826998 splicing factor proline/glutamine rich (polypyrimidin... 30 0.67
gi|154759249 keratin associated protein 10-11 [Homo sapiens] 30 1.1
gi|239756535 PREDICTED: hypothetical protein [Homo sapiens] 29 1.5
gi|239751051 PREDICTED: hypothetical protein [Homo sapiens] 29 1.5
gi|239745492 PREDICTED: hypothetical protein XP_002343473 [Homo ... 29 1.5
gi|224548950 hypothetical protein LOC644844 [Homo sapiens] 29 1.5
gi|150170725 zinc and ring finger 4 [Homo sapiens] 29 1.9
gi|115387099 brain-specific angiogenesis inhibitor 2 [Homo sapiens] 29 1.9
gi|13994236 cat eye syndrome chromosome region, candidate 6 isof... 28 2.5
gi|239740948 PREDICTED: hypothetical protein LOC644246 [Homo sap... 28 2.5
gi|206597445 alpha 1 type XVIII collagen isoform 3 precursor [Ho... 28 2.5
gi|111118994 brain-specific angiogenesis inhibitor 1 precursor [... 28 2.5
gi|94536830 DMRT-like family C2 [Homo sapiens] 28 2.5
gi|28557723 hypothetical protein LOC283416 [Homo sapiens] 28 2.5
gi|157674356 nexin-related serine protease inhibitor [Homo sapiens] 28 3.3
gi|148833508 notch1 preproprotein [Homo sapiens] 28 4.3
>gi|239756030 PREDICTED: hypothetical protein [Homo sapiens]
Length = 159
Score = 355 bits (912), Expect = 7e-99
Identities = 159/159 (100%), Positives = 159/159 (100%)
Query: 1 MSGWKVCTGCGRSSQEGQGTCWPHQFMGDTALGQPPCSAVGSCPLPPPSWECGCVLLLWI 60
MSGWKVCTGCGRSSQEGQGTCWPHQFMGDTALGQPPCSAVGSCPLPPPSWECGCVLLLWI
Sbjct: 1 MSGWKVCTGCGRSSQEGQGTCWPHQFMGDTALGQPPCSAVGSCPLPPPSWECGCVLLLWI 60
Query: 61 KLPGCWPHWTGVAVRPCLGAWLPPEVRAAQGGVGPGEGSGGSCLQQICFSSLQVKVVCSC 120
KLPGCWPHWTGVAVRPCLGAWLPPEVRAAQGGVGPGEGSGGSCLQQICFSSLQVKVVCSC
Sbjct: 61 KLPGCWPHWTGVAVRPCLGAWLPPEVRAAQGGVGPGEGSGGSCLQQICFSSLQVKVVCSC 120
Query: 121 AFPSAWQIMQDCEPQLRARQGEAPLVSMPQLRLKLRPLL 159
AFPSAWQIMQDCEPQLRARQGEAPLVSMPQLRLKLRPLL
Sbjct: 121 AFPSAWQIMQDCEPQLRARQGEAPLVSMPQLRLKLRPLL 159
>gi|239750584 PREDICTED: hypothetical protein [Homo sapiens]
Length = 159
Score = 355 bits (912), Expect = 7e-99
Identities = 159/159 (100%), Positives = 159/159 (100%)
Query: 1 MSGWKVCTGCGRSSQEGQGTCWPHQFMGDTALGQPPCSAVGSCPLPPPSWECGCVLLLWI 60
MSGWKVCTGCGRSSQEGQGTCWPHQFMGDTALGQPPCSAVGSCPLPPPSWECGCVLLLWI
Sbjct: 1 MSGWKVCTGCGRSSQEGQGTCWPHQFMGDTALGQPPCSAVGSCPLPPPSWECGCVLLLWI 60
Query: 61 KLPGCWPHWTGVAVRPCLGAWLPPEVRAAQGGVGPGEGSGGSCLQQICFSSLQVKVVCSC 120
KLPGCWPHWTGVAVRPCLGAWLPPEVRAAQGGVGPGEGSGGSCLQQICFSSLQVKVVCSC
Sbjct: 61 KLPGCWPHWTGVAVRPCLGAWLPPEVRAAQGGVGPGEGSGGSCLQQICFSSLQVKVVCSC 120
Query: 121 AFPSAWQIMQDCEPQLRARQGEAPLVSMPQLRLKLRPLL 159
AFPSAWQIMQDCEPQLRARQGEAPLVSMPQLRLKLRPLL
Sbjct: 121 AFPSAWQIMQDCEPQLRARQGEAPLVSMPQLRLKLRPLL 159
>gi|239744881 PREDICTED: hypothetical protein XP_002344129 [Homo
sapiens]
Length = 159
Score = 354 bits (908), Expect = 2e-98
Identities = 158/159 (99%), Positives = 159/159 (100%)
Query: 1 MSGWKVCTGCGRSSQEGQGTCWPHQFMGDTALGQPPCSAVGSCPLPPPSWECGCVLLLWI 60
MSGWKVCTGCGRSSQEGQGTCWPH+FMGDTALGQPPCSAVGSCPLPPPSWECGCVLLLWI
Sbjct: 1 MSGWKVCTGCGRSSQEGQGTCWPHRFMGDTALGQPPCSAVGSCPLPPPSWECGCVLLLWI 60
Query: 61 KLPGCWPHWTGVAVRPCLGAWLPPEVRAAQGGVGPGEGSGGSCLQQICFSSLQVKVVCSC 120
KLPGCWPHWTGVAVRPCLGAWLPPEVRAAQGGVGPGEGSGGSCLQQICFSSLQVKVVCSC
Sbjct: 61 KLPGCWPHWTGVAVRPCLGAWLPPEVRAAQGGVGPGEGSGGSCLQQICFSSLQVKVVCSC 120
Query: 121 AFPSAWQIMQDCEPQLRARQGEAPLVSMPQLRLKLRPLL 159
AFPSAWQIMQDCEPQLRARQGEAPLVSMPQLRLKLRPLL
Sbjct: 121 AFPSAWQIMQDCEPQLRARQGEAPLVSMPQLRLKLRPLL 159
>gi|239754884 PREDICTED: hypothetical protein XP_002346151 [Homo
sapiens]
Length = 212
Score = 32.7 bits (73), Expect = 0.13
Identities = 18/48 (37%), Positives = 21/48 (43%), Gaps = 2/48 (4%)
Query: 47 PPSWECGCVLLLWIKLPGCWPHWTGVAVRPCLGAWLPPEVRAAQGGVG 94
PPS+ C C LL KLP CW RP + P +A G G
Sbjct: 156 PPSFLCCCFLLPSSKLPWCWSSQRRSVTRPATATYSEP--HSAHRGCG 201
>gi|239749421 PREDICTED: hypothetical protein XP_002347040 [Homo
sapiens]
Length = 212
Score = 32.7 bits (73), Expect = 0.13
Identities = 18/48 (37%), Positives = 21/48 (43%), Gaps = 2/48 (4%)
Query: 47 PPSWECGCVLLLWIKLPGCWPHWTGVAVRPCLGAWLPPEVRAAQGGVG 94
PPS+ C C LL KLP CW RP + P +A G G
Sbjct: 156 PPSFLCCCFLLPSSKLPWCWSSQRRSVTRPATATYSEP--HSAHRGCG 201
>gi|239743557 PREDICTED: hypothetical protein XP_002342892 [Homo
sapiens]
Length = 212
Score = 32.7 bits (73), Expect = 0.13
Identities = 18/48 (37%), Positives = 21/48 (43%), Gaps = 2/48 (4%)
Query: 47 PPSWECGCVLLLWIKLPGCWPHWTGVAVRPCLGAWLPPEVRAAQGGVG 94
PPS+ C C LL KLP CW RP + P +A G G
Sbjct: 156 PPSFLCCCFLLPSSKLPWCWSSQRRSVTRPATATYSEP--HSAHRGCG 201
>gi|222352129 von Willebrand factor A domain containing 5B2 [Homo
sapiens]
Length = 1242
Score = 32.3 bits (72), Expect = 0.18
Identities = 20/54 (37%), Positives = 24/54 (44%), Gaps = 5/54 (9%)
Query: 6 VCTGCGRSSQEGQGTCWPHQFMGDTALGQPPCSAVGSCPLPPPSWECGCVLLLW 59
V T C S + G G+ + G G P GS PL PPS + GC L W
Sbjct: 666 VLTHCSASPEPGPGSTGSSESPGSQGPGSPE----GSAPLEPPSQQ-GCRSLAW 714
>gi|239757289 PREDICTED: hypothetical protein [Homo sapiens]
Length = 545
Score = 31.6 bits (70), Expect = 0.30
Identities = 17/42 (40%), Positives = 20/42 (47%), Gaps = 3/42 (7%)
Query: 63 PGCWPHWTGVAVRPCLGAWL---PPEVRAAQGGVGPGEGSGG 101
PGC P + P L WL P+ R +G GPG G GG
Sbjct: 458 PGCLPWHSSQKPGPRLRQWLWKLQPQSREQRGAGGPGAGVGG 499
>gi|239751796 PREDICTED: hypothetical protein XP_002348004 [Homo
sapiens]
Length = 291
Score = 31.6 bits (70), Expect = 0.30
Identities = 17/42 (40%), Positives = 20/42 (47%), Gaps = 3/42 (7%)
Query: 63 PGCWPHWTGVAVRPCLGAWL---PPEVRAAQGGVGPGEGSGG 101
PGC P + P L WL P+ R +G GPG G GG
Sbjct: 204 PGCLPWHSSQKPGPRLRQWLWKLQPQSREQRGAGGPGAGVGG 245
>gi|239746287 PREDICTED: hypothetical protein XP_002343724 [Homo
sapiens]
Length = 291
Score = 31.6 bits (70), Expect = 0.30
Identities = 17/42 (40%), Positives = 20/42 (47%), Gaps = 3/42 (7%)
Query: 63 PGCWPHWTGVAVRPCLGAWL---PPEVRAAQGGVGPGEGSGG 101
PGC P + P L WL P+ R +G GPG G GG
Sbjct: 204 PGCLPWHSSQKPGPRLRQWLWKLQPQSREQRGAGGPGAGVGG 245
>gi|31881785 Hermansky-Pudlak syndrome-6 [Homo sapiens]
Length = 775
Score = 31.6 bits (70), Expect = 0.30
Identities = 27/93 (29%), Positives = 33/93 (35%), Gaps = 24/93 (25%)
Query: 9 GCGRSSQEGQGTCWPHQFMGDTALGQPPCSAVGSCPLPPPSWECGCVLLLWIKLPGCWPH 68
G G+ + W G TA +PP LPP C C+ L +
Sbjct: 531 GNGKLRSQAPPDVWKKVLGGITAGKEPPNGI-----LPPFELLCQCLCQLEPR------- 578
Query: 69 WTGVAVRPCLGAWLPPEVRAAQGGVGPGEGSGG 101
WLPP V AQ GPG G+GG
Sbjct: 579 ------------WLPPFVELAQQQGGPGWGAGG 599
>gi|122937309 leucine rich repeat containing 4B [Homo sapiens]
Length = 713
Score = 31.6 bits (70), Expect = 0.30
Identities = 18/43 (41%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Query: 44 PLPPP--SWECGCVLLLWIKLPGCWPHWTGVAVRPCLGAWLPP 84
PLPP SW G +L LW+ P GVAV G PP
Sbjct: 11 PLPPGRMSWPHGALLFLWLFSPPLGAGGGGVAVTSAAGGGSPP 53
>gi|7524363 paired box 8 isoform PAX8C [Homo sapiens]
Length = 398
Score = 31.2 bits (69), Expect = 0.39
Identities = 15/44 (34%), Positives = 17/44 (38%)
Query: 7 CTGCGRSSQEGQGTCWPHQFMGDTALGQPPCSAVGSCPLPPPSW 50
CTG R+ QG W DT PP PLP +W
Sbjct: 325 CTGSSRARPSSQGERWWGPRCPDTHPTSPPADRAAMPPLPSQAW 368
>gi|38202205 zinc finger, FYVE domain containing 26 [Homo sapiens]
Length = 2539
Score = 30.8 bits (68), Expect = 0.51
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 118 CSCAFPSAWQIMQDCEPQLRARQGEAP 144
C C W++ Q C PQL+ QG+ P
Sbjct: 21 CECLRRGEWELAQACVPQLQEGQGDIP 47
>gi|4826998 splicing factor proline/glutamine rich (polypyrimidine
tract binding protein associated) [Homo sapiens]
Length = 707
Score = 30.4 bits (67), Expect = 0.67
Identities = 24/69 (34%), Positives = 27/69 (39%), Gaps = 6/69 (8%)
Query: 33 GQPPCSAVGSCPLPPPSWECGCVLLLWIKLPGCWPHWTGVAVRPCLGAWLPPEVRAAQG- 91
G PP S G P PPP+ V P P +GV P PP A G
Sbjct: 140 GAPPGSGPGPTPTPPPA-----VTSAPPGAPPPTPPSSGVPTTPPQAGGPPPPPAAVPGP 194
Query: 92 GVGPGEGSG 100
G GP +G G
Sbjct: 195 GPGPKQGPG 203
>gi|154759249 keratin associated protein 10-11 [Homo sapiens]
Length = 298
Score = 29.6 bits (65), Expect = 1.1
Identities = 29/123 (23%), Positives = 43/123 (34%), Gaps = 8/123 (6%)
Query: 34 QPPCSAVGSCPLPPPSWECGCVLLLWIKLPGCWPHWTGVAVRP-CLGAWLPP--EVRAAQ 90
+PPCSA SC P PS C + + P C A + C + P + + Q
Sbjct: 28 EPPCSA-PSCCAPAPSLSLVCTPVSCVSSPCCQAACEPSACQSGCTSSCTPSCCQQSSCQ 86
Query: 91 GGVGPGEGSGGSCLQQICFSSLQVKVVC----SCAFPSAWQIMQDCEPQLRARQGEAPLV 146
+C +C ++ K VC C S+ C+P A P
Sbjct: 87 PACCTSSPCQQACCVPVCCKTVCCKPVCCVPVCCGAASSCCRQSSCQPACCASSSCQPAC 146
Query: 147 SMP 149
+P
Sbjct: 147 CVP 149
>gi|239756535 PREDICTED: hypothetical protein [Homo sapiens]
Length = 90
Score = 29.3 bits (64), Expect = 1.5
Identities = 14/37 (37%), Positives = 17/37 (45%)
Query: 65 CWPHWTGVAVRPCLGAWLPPEVRAAQGGVGPGEGSGG 101
C P W+G + G + P GVGPG G GG
Sbjct: 14 CSPSWSGTSGSSDFGFPVDPGNPGEGRGVGPGHGPGG 50
>gi|239751051 PREDICTED: hypothetical protein [Homo sapiens]
Length = 90
Score = 29.3 bits (64), Expect = 1.5
Identities = 14/37 (37%), Positives = 17/37 (45%)
Query: 65 CWPHWTGVAVRPCLGAWLPPEVRAAQGGVGPGEGSGG 101
C P W+G + G + P GVGPG G GG
Sbjct: 14 CSPSWSGTSGSSDFGFPVDPGNPGEGRGVGPGHGPGG 50
>gi|239745492 PREDICTED: hypothetical protein XP_002343473 [Homo
sapiens]
Length = 90
Score = 29.3 bits (64), Expect = 1.5
Identities = 14/37 (37%), Positives = 17/37 (45%)
Query: 65 CWPHWTGVAVRPCLGAWLPPEVRAAQGGVGPGEGSGG 101
C P W+G + G + P GVGPG G GG
Sbjct: 14 CSPSWSGTSGSSDFGFPVDPGNPGEGRGVGPGHGPGG 50
>gi|224548950 hypothetical protein LOC644844 [Homo sapiens]
Length = 82
Score = 29.3 bits (64), Expect = 1.5
Identities = 14/38 (36%), Positives = 14/38 (36%)
Query: 10 CGRSSQEGQGTCWPHQFMGDTALGQPPCSAVGSCPLPP 47
CG G G C P G G PP G C PP
Sbjct: 21 CGPPPGHGPGPCGPPPHHGPGPCGPPPGHGPGPCGPPP 58
Score = 29.3 bits (64), Expect = 1.5
Identities = 14/38 (36%), Positives = 14/38 (36%)
Query: 10 CGRSSQEGQGTCWPHQFMGDTALGQPPCSAVGSCPLPP 47
CG G G C P G G PP G C PP
Sbjct: 32 CGPPPHHGPGPCGPPPGHGPGPCGPPPHHGPGPCGPPP 69
>gi|150170725 zinc and ring finger 4 [Homo sapiens]
Length = 429
Score = 28.9 bits (63), Expect = 1.9
Identities = 16/54 (29%), Positives = 19/54 (35%), Gaps = 11/54 (20%)
Query: 35 PPCSAVGSCPLPPPSWECGCVLL-----------LWIKLPGCWPHWTGVAVRPC 77
PPC +G P+ SW GC L LW+ C H V C
Sbjct: 241 PPCHDLGCHPVLTVSWVLGCTLALVVSAFFVLNHLWLWAQACCSHRRPVKTSTC 294
>gi|115387099 brain-specific angiogenesis inhibitor 2 [Homo sapiens]
Length = 1585
Score = 28.9 bits (63), Expect = 1.9
Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 4/46 (8%)
Query: 4 WKVCT-GCGRSSQEGQGTCWPHQFMGDTALG---QPPCSAVGSCPL 45
W +C+ CGR S+ TC P Q G G Q ++ +CP+
Sbjct: 373 WSLCSRSCGRGSRSRMRTCVPPQHGGKACEGPELQTKLCSMAACPV 418
>gi|13994236 cat eye syndrome chromosome region, candidate 6 isoform
a [Homo sapiens]
Length = 578
Score = 28.5 bits (62), Expect = 2.5
Identities = 22/64 (34%), Positives = 24/64 (37%), Gaps = 9/64 (14%)
Query: 79 GAWLPPEVRAAQGGVGPGEGSGGSCLQQICFSSLQVKVVCSCA-FPSAWQIMQDCEPQLR 137
GA P R+A G G G GSG SC C C C P + C P R
Sbjct: 144 GAVGGPGSRSAGGAGGTGTGSGASCCPCCC--------CCGCPDRPGRRGRRRGCAPSPR 195
Query: 138 ARQG 141
R G
Sbjct: 196 CRWG 199
>gi|239740948 PREDICTED: hypothetical protein LOC644246 [Homo
sapiens]
Length = 328
Score = 28.5 bits (62), Expect = 2.5
Identities = 26/80 (32%), Positives = 33/80 (41%), Gaps = 11/80 (13%)
Query: 33 GQPPCSAVGSCPLPPPSWECGCVLLLWIKLPGCWPHWTGVAVRPCLGAWLPPEVRAAQGG 92
G P A+G+ P P P K+PG + + PCL L RA G
Sbjct: 56 GPPHTPALGATPSPDPQQGSP---ERPFKVPGVF------STLPCLSTALT--FRAGGRG 104
Query: 93 VGPGEGSGGSCLQQICFSSL 112
G GEG GG L + F +L
Sbjct: 105 RGGGEGGGGERLLFLLFRAL 124
>gi|206597445 alpha 1 type XVIII collagen isoform 3 precursor [Homo
sapiens]
Length = 1751
Score = 28.5 bits (62), Expect = 2.5
Identities = 19/51 (37%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Query: 32 LGQPPCSAVGSC-PLPPPSWECGCVLLLWIKLPGCWPHWTGVAVRPCLGAW 81
LG P + G C PLPP CG + + LP H +G VR AW
Sbjct: 323 LGADPEAPAGRCLPLPPSLPVCGHLGISRFWLPNHLHHESGEQVRAGARAW 373
>gi|111118994 brain-specific angiogenesis inhibitor 1 precursor
[Homo sapiens]
Length = 1584
Score = 28.5 bits (62), Expect = 2.5
Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 4/47 (8%)
Query: 2 SGWKVCTG-CGRSSQEGQGTCWPHQFMGDTALG---QPPCSAVGSCP 44
S W +C+ CGR ++ TC P QF G+ G Q + CP
Sbjct: 416 SPWSLCSSTCGRGFRDRTRTCRPPQFGGNPCEGPEKQTKFCNIALCP 462
>gi|94536830 DMRT-like family C2 [Homo sapiens]
Length = 367
Score = 28.5 bits (62), Expect = 2.5
Identities = 22/53 (41%), Positives = 24/53 (45%), Gaps = 4/53 (7%)
Query: 34 QPPCSAVGSCPLPPPSWECGCVLLLWIKLPGCWP-HWTGVAVRPCL-GAWLPP 84
Q P AV P PP CG +LL P P WT V P + G WLPP
Sbjct: 134 QTPHGAVLLAPTPPGKNSCGPLLL--SHPPEASPLSWTPVPPGPWVPGHWLPP 184
>gi|28557723 hypothetical protein LOC283416 [Homo sapiens]
Length = 131
Score = 28.5 bits (62), Expect = 2.5
Identities = 21/63 (33%), Positives = 25/63 (39%), Gaps = 10/63 (15%)
Query: 44 PLPPPSWECGCVLLLWIKLPGCWPHWTGVAVRPCLGAWLPPEVRAAQGGVGPGEGSGGSC 103
P P P W GC ++ PG P AV P G P + G P E + GS
Sbjct: 44 PAPSPRWGLGCGR---VRYPGPHPR---RAVEPAAGPLSAPII----AGGHPAEAAAGSA 93
Query: 104 LQQ 106
QQ
Sbjct: 94 KQQ 96
>gi|157674356 nexin-related serine protease inhibitor [Homo sapiens]
Length = 424
Score = 28.1 bits (61), Expect = 3.3
Identities = 12/36 (33%), Positives = 20/36 (55%)
Query: 92 GVGPGEGSGGSCLQQICFSSLQVKVVCSCAFPSAWQ 127
G GP EG GG +Q+ + Q+ +V + +F W+
Sbjct: 164 GGGPSEGPGGWPWEQVSAAFAQLVLVSTMSFQGTWR 199
>gi|148833508 notch1 preproprotein [Homo sapiens]
Length = 2555
Score = 27.7 bits (60), Expect = 4.3
Identities = 25/98 (25%), Positives = 33/98 (33%), Gaps = 29/98 (29%)
Query: 36 PCSAVGSCPLPPPSWECGCVLLLWIKLPGCWPHWTGVAVRPCLGAWLPPEVRAAQGGVGP 95
PC G+C ++C C+L +TG L P R
Sbjct: 799 PCLNQGTCIDDVAGYKCNCLL-----------PYTGATCEVVLAPCAPSPCR-------- 839
Query: 96 GEGSGGSCLQQICFSSLQVKVVCSCAFPSAWQIMQDCE 133
+GG C Q + S SC P+ WQ Q CE
Sbjct: 840 ---NGGECRQSEDYESF------SCVCPTGWQ-GQTCE 867
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.323 0.140 0.514
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,560,186
Number of Sequences: 37866
Number of extensions: 454021
Number of successful extensions: 1542
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 51
Number of HSP's that attempted gapping in prelim test: 1499
Number of HSP's gapped (non-prelim): 101
length of query: 159
length of database: 18,247,518
effective HSP length: 94
effective length of query: 65
effective length of database: 14,688,114
effective search space: 954727410
effective search space used: 954727410
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.