Guide to the Human Genome
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Name: LOC100134274 Sequence: fasta or formatted (148aa) NCBI GI: 239755869
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.1          9           1
 C cysteine            1.4          2           1
 D aspartate           1.4          2           1
 E glutamate           8.1         12           2
 F phenylalanine       4.7          7           1
 G glycine             4.1          6           1
 H histidine           2.7          4           1
 I isoleucine          4.1          6           1
 K lysine              2.0          3           1
 L leucine            14.2         21           3
 M methionine          2.0          3           1
 N asparagine          2.7          4           1
 P proline            10.1         15           2
 Q glutamine           8.1         12           2
 R arginine            8.1         12           1
 S serine             11.5         17           3
 T threonine           2.7          4           1
 V valine              2.0          3           1
 W tryptophan          2.0          3           2
 Y tyrosine            2.0          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
SEZ6L                 0.036   seizure related 6 homolog (mouse)-like precursor [Ho...
GGA1                  0.029   golgi associated, gamma adaptin ear containing, ARF b...
GGA1                  0.029   golgi associated, gamma adaptin ear containing, ARF ...
KIAA1543              0.029   NEZHA isoform 2 
KIAA1543              0.029   NEZHA isoform 1 
ZNF853                0.025   zinc finger protein 853 
SSH3                  0.025   slingshot homolog 3 
C20orf151             0.025   hypothetical protein LOC140893 
SYN1                  0.022   synapsin I isoform Ia 
ZNF609                0.018   zinc finger protein 609 
AFF4                  0.018   ALL1 fused gene from 5q31 
DACH1                 0.018   dachshund homolog 1 isoform c 
LOC651986             0.018   PREDICTED: similar to forkhead box L2 
NEDD4L                0.014   neural precursor cell expressed, developmentally do...
NEDD4L                0.014   neural precursor cell expressed, developmentally dow...
NEDD4L                0.014   neural precursor cell expressed, developmentally do...
NEDD4L                0.014   neural precursor cell expressed, developmentally do...
NEDD4L                0.014   neural precursor cell expressed, developmentally do...
NEDD4L                0.014   neural precursor cell expressed, developmentally do...
NEDD4L                0.014   neural precursor cell expressed, developmentally do...
NEDD4L                0.014   neural precursor cell expressed, developmentally do...
NEDD4L                0.014   neural precursor cell expressed, developmentally do...
DACH1                 0.014   dachshund homolog 1 isoform b 
DACH1                 0.014   dachshund homolog 1 isoform a 
CITED2                0.014   Cbp/p300-interacting transactivator, with Glu/Asp-ri...
ROBO4                 0.014   roundabout homolog 4, magic roundabout 
LMTK3                 0.014   lemur tyrosine kinase 3 
TOX3                  0.014   TOX high mobility group box family member 3 isoform...
TOX3                  0.014   TOX high mobility group box family member 3 isoform...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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