Guide to the Human Genome
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Name: NEDD4L Sequence: fasta or formatted (955aa) NCBI GI: 21361472
Description:

neural precursor cell expressed, developmentally down-regulated 4-like isoform 3

Referenced in:

Sodium Channels
Ubiquitin and Related Protein Modifications
WW Domain

Other entries for this name:
alt prot [854aa] neural precursor cell expressed, developmentally down-regulated 4...
alt prot [854aa] neural precursor cell expressed, developmentally down-regulated 4...
alt prot [975aa] neural precursor cell expressed, developmentally down-regulated 4...
alt prot [967aa] neural precursor cell expressed, developmentally down-regulated 4...
alt prot [947aa] neural precursor cell expressed, developmentally down-regulated 4...
alt prot [834aa] neural precursor cell expressed, developmentally down-regulated 4...
alt prot [834aa] neural precursor cell expressed, developmentally down-regulated 4...
alt prot [854aa] neural precursor cell expressed, developmentally down-regulated 4...
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.0         38           2
 C cysteine            0.6          6           1
 D aspartate           6.1         58           2
 E glutamate           8.4         80           2
 F phenylalanine       4.6         44           2
 G glycine             5.8         55           2
 H histidine           2.5         24           1
 I isoleucine          4.2         40           1
 K lysine              5.0         48           2
 L leucine             9.3         89           2
 M methionine          2.3         22           2
 N asparagine          6.0         57           2
 P proline             8.1         77           4
 Q glutamine           3.8         36           1
 R arginine            6.8         65           2
 S serine              7.1         68           2
 T threonine           5.0         48           3
 V valine              5.1         49           2
 W tryptophan          2.0         19           1
 Y tyrosine            3.4         32           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   neural precursor cell expressed, developmentally dow... 
NEDD4L                0.994   neural precursor cell expressed, developmentally do...
NEDD4L                0.985   neural precursor cell expressed, developmentally do...
NEDD4L                0.979   neural precursor cell expressed, developmentally do...
NEDD4L                0.877   neural precursor cell expressed, developmentally do...
NEDD4L                0.877   neural precursor cell expressed, developmentally do...
NEDD4L                0.871   neural precursor cell expressed, developmentally do...
NEDD4L                0.871   neural precursor cell expressed, developmentally do...
NEDD4L                0.871   neural precursor cell expressed, developmentally do...
NEDD4                 0.610   neural precursor cell expressed, developmentally do...
NEDD4                 0.491   neural precursor cell expressed, developmentally do...
WWP1                  0.256   WW domain containing E3 ubiquitin protein ligase 1 [...
ITCH                  0.255   itchy homolog E3 ubiquitin protein ligase 
SMURF2                0.247   SMAD specific E3 ubiquitin protein ligase 2 
WWP2                  0.235   WW domain containing E3 ubiquitin protein ligase 2 i...
SMURF1                0.223   Smad ubiquitination regulatory factor 1 isoform 2 [H...
SMURF1                0.220   Smad ubiquitination regulatory factor 1 isoform 1 [H...
WWP2                  0.210   WW domain containing E3 ubiquitin protein ligase 2 i...
HECW2                 0.207   HECT, C2 and WW domain containing E3 ubiquitin prote...
HECW1                 0.180   NEDD4-like ubiquitin-protein ligase 1 
HUWE1                 0.163   HECT, UBA and WWE domain containing 1 
HACE1                 0.134   HECT domain and ankyrin repeat containing, E3 ubiqu...
KIAA0317              0.099   hypothetical protein LOC9870 
UBE3A                 0.092   ubiquitin protein ligase E3A isoform 3 
UBE3A                 0.092   ubiquitin protein ligase E3A isoform 1 
UBE3A                 0.092   ubiquitin protein ligase E3A isoform 2 
UBE3C                 0.083   ubiquitin protein ligase E3C 
HERC3                 0.081   hect domain and RLD 3 
HECTD2                0.081   HECT domain containing 2 isoform a 
HERC4                 0.078   hect domain and RLD 4 isoform b 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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