| Name: AFF4 | Sequence: fasta or formatted (1163aa) | NCBI GI: 7656879 | |
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Description: ALL1 fused gene from 5q31
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Referenced in: Additional Genes in Development
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Composition:
Amino acid Percentage Count Longest homopolymer A alanine 5.2 61 3 C cysteine 0.6 7 1 D aspartate 5.1 59 2 E glutamate 7.4 86 3 F phenylalanine 1.9 22 2 G glycine 5.1 59 2 H histidine 2.8 32 2 I isoleucine 2.2 26 2 K lysine 10.5 122 3 L leucine 5.6 65 2 M methionine 1.8 21 1 N asparagine 4.6 53 2 P proline 8.2 95 3 Q glutamine 4.6 53 2 R arginine 4.7 55 2 S serine 18.8 219 4 T threonine 5.2 60 2 V valine 3.0 35 2 W tryptophan 0.6 7 1 Y tyrosine 2.2 26 2 |
Comparative genomics:
Search single species RefSeq proteins at NCBI
Search summary 
Figure data | ||
Related human proteins:Protein Relative score Description Self-match 1.000 ALL1 fused gene from 5q31 AFF1 0.294 myeloid/lymphoid or mixed-lineage leukemia trithorax ... AFF3 0.272 AF4/FMR2 family, member 3 isoform 2 AFF3 0.272 AF4/FMR2 family, member 3 isoform 1 AFF2 0.265 fragile X mental retardation 2 DSPP 0.054 dentin sialophosphoprotein preproprotein NEFH 0.041 neurofilament, heavy polypeptide 200kDa SRRM2 0.037 splicing coactivator subunit SRm300 RBBP6 0.031 retinoblastoma-binding protein 6 isoform 2 RBBP6 0.031 retinoblastoma-binding protein 6 isoform 1 FLG 0.029 filaggrin LOC100170229 0.029 hypothetical protein LOC100170229 SRRM1 0.027 serine/arginine repetitive matrix 1 PRG4 0.026 proteoglycan 4 isoform B PRG4 0.026 proteoglycan 4 isoform A DPCR1 0.026 diffuse panbronchiolitis critical region 1 protein ... NKTR 0.025 natural killer-tumor recognition sequence GPATCH8 0.025 G patch domain containing 8 NOLC1 0.025 nucleolar and coiled-body phosphoprotein 1 HRNR 0.024 hornerin PPIG 0.024 peptidylprolyl isomerase G SFRS4 0.024 splicing factor, arginine/serine-rich 4 MLL 0.024 myeloid/lymphoid or mixed-lineage leukemia protein [... MUC12 0.024 PREDICTED: mucin 12 ANK2 0.023 ankyrin 2 isoform 1 LOC100294236 0.023 PREDICTED: similar to diffuse panbronchiolitis crit... TRDN 0.022 triadin DMP1 0.021 dentin matrix acidic phosphoprotein 1 isoform 1 precu... TCOF1 0.021 Treacher Collins-Franceschetti syndrome 1 isoform d... TCOF1 0.021 Treacher Collins-Franceschetti syndrome 1 isoform b ...Human BLASTP results (used to prepare the table) | |||
Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.
See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.
