Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 239751597
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239751597 PREDICTED: hypothetical protein XP_002347925 [Homo
sapiens]
(194 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239757091 PREDICTED: hypothetical protein [Homo sapiens] 404 e-113
gi|239751597 PREDICTED: hypothetical protein XP_002347925 [Homo ... 404 e-113
gi|239746112 PREDICTED: hypothetical protein XP_002344192 [Homo ... 404 e-113
gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens] 47 1e-05
gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Hom... 45 3e-05
gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Hom... 45 3e-05
gi|18105032 type X collagen alpha 1 precursor [Homo sapiens] 45 5e-05
gi|4826998 splicing factor proline/glutamine rich (polypyrimidin... 45 5e-05
gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Ho... 44 7e-05
gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Ho... 44 7e-05
gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Ho... 44 7e-05
gi|48762934 alpha 2 type I collagen [Homo sapiens] 44 7e-05
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens] 43 1e-04
gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens] 43 2e-04
gi|25777671 protein phosphatase 1, regulatory subunit 10 [Homo s... 42 4e-04
gi|110832843 TBP-associated factor 4 [Homo sapiens] 42 4e-04
gi|110735435 collagen, type V, alpha 3 preproprotein [Homo sapiens] 42 4e-04
gi|239753839 PREDICTED: hypothetical protein [Homo sapiens] 41 6e-04
gi|119508426 alpha 3 type IX collagen [Homo sapiens] 41 6e-04
gi|148536823 type IV alpha 6 collagen isoform A precursor [Homo ... 40 0.001
gi|16357503 type IV alpha 6 collagen isoform B precursor [Homo s... 40 0.001
gi|206597445 alpha 1 type XVIII collagen isoform 3 precursor [Ho... 40 0.001
gi|110611233 alpha 1 type XVIII collagen isoform 2 precursor [Ho... 40 0.001
gi|110611235 alpha 1 type XVIII collagen isoform 1 precursor [Ho... 40 0.001
gi|148536825 alpha 1 type IV collagen preproprotein [Homo sapiens] 39 0.002
gi|239754955 PREDICTED: similar to COL22A1 protein [Homo sapiens] 39 0.002
gi|47778921 alpha 1 type XIX collagen precursor [Homo sapiens] 39 0.002
gi|40805823 collagen, type XXII, alpha 1 [Homo sapiens] 39 0.002
gi|122937269 Wilms tumor 1 interacting protein [Homo sapiens] 39 0.002
gi|239748099 PREDICTED: hypothetical protein [Homo sapiens] 39 0.003
>gi|239757091 PREDICTED: hypothetical protein [Homo sapiens]
Length = 194
Score = 404 bits (1037), Expect = e-113
Identities = 194/194 (100%), Positives = 194/194 (100%)
Query: 1 MHGGVRSLVSTPASWSAAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGKAPPG 60
MHGGVRSLVSTPASWSAAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGKAPPG
Sbjct: 1 MHGGVRSLVSTPASWSAAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGKAPPG 60
Query: 61 AAKSTSRVHCRAAEGGGLRPVPAVPLPGPAGRSGGPGAWSAQKHGGHLSGRAGGTGRKTE 120
AAKSTSRVHCRAAEGGGLRPVPAVPLPGPAGRSGGPGAWSAQKHGGHLSGRAGGTGRKTE
Sbjct: 61 AAKSTSRVHCRAAEGGGLRPVPAVPLPGPAGRSGGPGAWSAQKHGGHLSGRAGGTGRKTE 120
Query: 121 GLARAPGGAPGHGLQGGQPHCCLQADSRRILLLAEQALRAGLGARPSALDLVLSCAASVP 180
GLARAPGGAPGHGLQGGQPHCCLQADSRRILLLAEQALRAGLGARPSALDLVLSCAASVP
Sbjct: 121 GLARAPGGAPGHGLQGGQPHCCLQADSRRILLLAEQALRAGLGARPSALDLVLSCAASVP 180
Query: 181 FIHTALGRPRRCPL 194
FIHTALGRPRRCPL
Sbjct: 181 FIHTALGRPRRCPL 194
>gi|239751597 PREDICTED: hypothetical protein XP_002347925 [Homo
sapiens]
Length = 194
Score = 404 bits (1037), Expect = e-113
Identities = 194/194 (100%), Positives = 194/194 (100%)
Query: 1 MHGGVRSLVSTPASWSAAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGKAPPG 60
MHGGVRSLVSTPASWSAAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGKAPPG
Sbjct: 1 MHGGVRSLVSTPASWSAAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGKAPPG 60
Query: 61 AAKSTSRVHCRAAEGGGLRPVPAVPLPGPAGRSGGPGAWSAQKHGGHLSGRAGGTGRKTE 120
AAKSTSRVHCRAAEGGGLRPVPAVPLPGPAGRSGGPGAWSAQKHGGHLSGRAGGTGRKTE
Sbjct: 61 AAKSTSRVHCRAAEGGGLRPVPAVPLPGPAGRSGGPGAWSAQKHGGHLSGRAGGTGRKTE 120
Query: 121 GLARAPGGAPGHGLQGGQPHCCLQADSRRILLLAEQALRAGLGARPSALDLVLSCAASVP 180
GLARAPGGAPGHGLQGGQPHCCLQADSRRILLLAEQALRAGLGARPSALDLVLSCAASVP
Sbjct: 121 GLARAPGGAPGHGLQGGQPHCCLQADSRRILLLAEQALRAGLGARPSALDLVLSCAASVP 180
Query: 181 FIHTALGRPRRCPL 194
FIHTALGRPRRCPL
Sbjct: 181 FIHTALGRPRRCPL 194
>gi|239746112 PREDICTED: hypothetical protein XP_002344192 [Homo
sapiens]
Length = 194
Score = 404 bits (1037), Expect = e-113
Identities = 194/194 (100%), Positives = 194/194 (100%)
Query: 1 MHGGVRSLVSTPASWSAAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGKAPPG 60
MHGGVRSLVSTPASWSAAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGKAPPG
Sbjct: 1 MHGGVRSLVSTPASWSAAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGKAPPG 60
Query: 61 AAKSTSRVHCRAAEGGGLRPVPAVPLPGPAGRSGGPGAWSAQKHGGHLSGRAGGTGRKTE 120
AAKSTSRVHCRAAEGGGLRPVPAVPLPGPAGRSGGPGAWSAQKHGGHLSGRAGGTGRKTE
Sbjct: 61 AAKSTSRVHCRAAEGGGLRPVPAVPLPGPAGRSGGPGAWSAQKHGGHLSGRAGGTGRKTE 120
Query: 121 GLARAPGGAPGHGLQGGQPHCCLQADSRRILLLAEQALRAGLGARPSALDLVLSCAASVP 180
GLARAPGGAPGHGLQGGQPHCCLQADSRRILLLAEQALRAGLGARPSALDLVLSCAASVP
Sbjct: 121 GLARAPGGAPGHGLQGGQPHCCLQADSRRILLLAEQALRAGLGARPSALDLVLSCAASVP 180
Query: 181 FIHTALGRPRRCPL 194
FIHTALGRPRRCPL
Sbjct: 181 FIHTALGRPRRCPL 194
>gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]
Length = 1466
Score = 46.6 bits (109), Expect = 1e-05
Identities = 41/133 (30%), Positives = 50/133 (37%), Gaps = 27/133 (20%)
Query: 3 GGVRSLVSTPASWSAAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGK----AP 58
GG + P AGPP G E + GG + A LP PPG P
Sbjct: 836 GGPPGVAGPPGGSGPAGPPGPQGVKGERGSPGGPGAAG---FPGARGLPGPPGSNGNPGP 892
Query: 59 PGAAKSTSRVHCRAAEGGGLRPVPAVPLPGPAGRSGGPGAWSAQKHGGHLSGRAGGTGRK 118
PG + S + +G PGPAG +G PG+ G AG G K
Sbjct: 893 PGPSGSPGK------DGP----------PGPAGNTGAPGSPGVSGP----KGDAGQPGEK 932
Query: 119 TEGLARAPGGAPG 131
A+ P GAPG
Sbjct: 933 GSPGAQGPPGAPG 945
Score = 42.7 bits (99), Expect = 2e-04
Identities = 45/136 (33%), Positives = 55/136 (40%), Gaps = 16/136 (11%)
Query: 12 PASWSAAGPPDGAGRPAEHEATGGASS------LHIKCMEAASLLPRPPGKAPPGAAKST 65
P S +GP AG+P E + G L I + A L PPG P +
Sbjct: 914 PGSPGVSGPKGDAGQPGEKGSPGAQGPPGAPGPLGIAGITGARGLAGPPGMPGPRGSPGP 973
Query: 66 SRVHCRAAEGG-----GLRPVPAVP-LPGPAGRSGGPGAWSAQKHGGHLSGRAGGTGRKT 119
V + + G G R P LPG AG +G PG G L GR G G K
Sbjct: 974 QGVKGESGKPGANGLSGERGPPGPQGLPGLAGTAGEPGRDGNPGSDG-LPGRDGSPGGKG 1032
Query: 120 E-GLARAPG--GAPGH 132
+ G +PG GAPGH
Sbjct: 1033 DRGENGSPGAPGAPGH 1048
Score = 40.8 bits (94), Expect = 7e-04
Identities = 42/143 (29%), Positives = 50/143 (34%), Gaps = 12/143 (8%)
Query: 4 GVRSLVSTPASWSAAGPPD-----GAGRPAEHEATGGASSLHIKCMEAASL-LPRPPG-K 56
G L P AGPP GA P G L E L P P G K
Sbjct: 684 GPPGLAGAPGLRGGAGPPGPEGGKGAAGPPGPPGAAGTPGLQGMPGERGGLGSPGPKGDK 743
Query: 57 APPGAAKSTSRVHCRAAEGGGLRPVPAVPLPGPAGRSGGPGAWSAQKHGGHLSGRAGGTG 116
PG + + G P + PGPAG+ G G A G ++G G G
Sbjct: 744 GEPGGPGADGV----PGKDGPRGPTGPIGPPGPAGQPGDKGEGGAPGLPG-IAGPRGSPG 798
Query: 117 RKTEGLARAPGGAPGHGLQGGQP 139
+ E P G PG Q G+P
Sbjct: 799 ERGETGPPGPAGFPGAPGQNGEP 821
Score = 40.4 bits (93), Expect = 0.001
Identities = 41/137 (29%), Positives = 46/137 (33%), Gaps = 11/137 (8%)
Query: 4 GVRSLVSTPASWSAAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGKAPPGAAK 63
G+ L T G P G P + GG A P PG PPG
Sbjct: 999 GLPGLAGTAGEPGRDGNPGSDGLPGRDGSPGGKGDRGENGSPGAPGAPGHPG--PPGPVG 1056
Query: 64 STSRVHCRAAEGGGLRPVPAVPLPGPAGRSGGPGAWSAQKHGGHLSGRAGGTGRKTEGLA 123
+ R G P PGPAG G PG + G +G G G K G
Sbjct: 1057 PAGKSGDRGESG----PAGPAGAPGPAGSRGAPGPQGPRGDKGE-TGERGAAGIK--GHR 1109
Query: 124 RAPG--GAPGHGLQGGQ 138
PG GAPG GQ
Sbjct: 1110 GFPGNPGAPGSPGPAGQ 1126
Score = 39.3 bits (90), Expect = 0.002
Identities = 42/145 (28%), Positives = 50/145 (34%), Gaps = 19/145 (13%)
Query: 4 GVRSLVSTPASWSAAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPG-KAPPGAA 62
G R L P S GPP +G P + G A + + P PG P G A
Sbjct: 876 GARGLPGPPGSNGNPGPPGPSGSPGKDGPPGPAGN---------TGAPGSPGVSGPKGDA 926
Query: 63 KSTSRVHCRAAEGGGLRPVP--------AVPLPGPAGRSGGPGAWSAQKHGGHLSGRAGG 114
A+G P P A L GP G G G+ Q G SG+ G
Sbjct: 927 GQPGEKGSPGAQGPPGAPGPLGIAGITGARGLAGPPGMPGPRGSPGPQGVKGE-SGKPGA 985
Query: 115 TGRKTEGLARAPGGAPGHGLQGGQP 139
G E P G PG G+P
Sbjct: 986 NGLSGERGPPGPQGLPGLAGTAGEP 1010
Score = 38.5 bits (88), Expect = 0.004
Identities = 38/136 (27%), Positives = 44/136 (32%), Gaps = 1/136 (0%)
Query: 4 GVRSLVSTPASWSAAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGKAPPGAAK 63
G + P AAG P G P E G K PGK P
Sbjct: 705 GGKGAAGPPGPPGAAGTPGLQGMPGERGGLGSPGPKGDKGEPGGPGADGVPGKDGPRGPT 764
Query: 64 STSRVHCRAAEGGGLRPVPAVPLPGPAGRSGGPGAWSAQKHGGHLSGRAGGTGRKTEGLA 123
A + G A LPG AG G PG G +G G G+ E
Sbjct: 765 GPIGPPGPAGQPGDKGEGGAPGLPGIAGPRGSPGERGETGPPGP-AGFPGAPGQNGEPGG 823
Query: 124 RAPGGAPGHGLQGGQP 139
+ GAPG +GG P
Sbjct: 824 KGERGAPGEKGEGGPP 839
Score = 38.1 bits (87), Expect = 0.005
Identities = 40/128 (31%), Positives = 47/128 (36%), Gaps = 16/128 (12%)
Query: 12 PASWSAAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGKAPPGAAKSTSRVHCR 71
P + G P G + TG + IK P PG PG A
Sbjct: 1076 PGPAGSRGAPGPQGPRGDKGETGERGAAGIKGHRGFPGNPGAPGS--PGPA--------- 1124
Query: 72 AAEGGGLRPVPAVPLPGPAGRSGGPGAWSAQKHGGHLSGRAGGTGRKTEGLARAPGGAPG 131
+G P PA P GP G SG PG H G + G G G + E R G+PG
Sbjct: 1125 GQQGAIGSPGPAGPR-GPVGPSGPPGKDGTSGHPGPI-GPPGPRGNRGE---RGSEGSPG 1179
Query: 132 HGLQGGQP 139
H Q G P
Sbjct: 1180 HPGQPGPP 1187
Score = 36.2 bits (82), Expect = 0.018
Identities = 39/133 (29%), Positives = 44/133 (33%), Gaps = 11/133 (8%)
Query: 12 PASWSAAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPG-KAPPGAAKSTSRVHC 70
P S A G AG P + A G + A P PPG PG
Sbjct: 344 PGSPGAKGEVGPAGSPGSNGAPGQRGEPGPQGHAGAQGPPGPPGINGSPGGKGEMGPAGI 403
Query: 71 RAAEG--GGLRPVPAVPLPGPAGRSGGPGAWSAQKHGGHLSGRAGGTGRKTEGLARAPG- 127
A G G P PGPAG +G PG G + R G A PG
Sbjct: 404 PGAPGLMGARGP------PGPAGANGAPGLRGGAGEPGKNGAKGEPGPRGERGEAGIPGV 457
Query: 128 -GAPGHGLQGGQP 139
GA G + G P
Sbjct: 458 PGAKGEDGKDGSP 470
Score = 34.3 bits (77), Expect = 0.068
Identities = 35/136 (25%), Positives = 41/136 (30%), Gaps = 4/136 (2%)
Query: 4 GVRSLVSTPASWSAAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGKAPPGAAK 63
G + P A GPP AG GGA A P P G+
Sbjct: 399 GPAGIPGAPGLMGARGPPGPAGANGAPGLRGGAGE---PGKNGAKGEPGPRGERGEAGIP 455
Query: 64 STSRVHCRAAEGGGLRPVPAVPLPGPAGRSGGPGAWSAQKHGGHLSGRAGGTGRKTEGLA 123
+ G A LPG AG G PG G + G G G +
Sbjct: 456 GVPGAKGEDGKDGSPGEPGANGLPGAAGERGAPGFRGPAGPNG-IPGEKGPAGERGAPGP 514
Query: 124 RAPGGAPGHGLQGGQP 139
P GA G + G P
Sbjct: 515 AGPRGAAGEPGRDGVP 530
Score = 33.1 bits (74), Expect = 0.15
Identities = 28/89 (31%), Positives = 40/89 (44%), Gaps = 16/89 (17%)
Query: 59 PGAAKSTSRVHCRAAEGGGLRPVPAVPLPGPAGRSGGPGAWSAQKHGGHLS--------G 110
PGAA + R ++G +P P PGP G +G PG+ A+ G G
Sbjct: 314 PGAAGARGNDGARGSDG---QPGP----PGPPGTAGFPGSPGAKGEVGPAGSPGSNGAPG 366
Query: 111 RAGGTGRKTEGLARAPGGAPG-HGLQGGQ 138
+ G G + A+ P G PG +G GG+
Sbjct: 367 QRGEPGPQGHAGAQGPPGPPGINGSPGGK 395
Score = 32.3 bits (72), Expect = 0.26
Identities = 41/134 (30%), Positives = 48/134 (35%), Gaps = 15/134 (11%)
Query: 19 GPPDGAGRPAEHEATGGASSLHIKCMEAASLLPR----PPGKAP-PGAAKSTSRVHCRAA 73
GPP AG+P + + GGA L S R PPG A PGA +
Sbjct: 768 GPPGPAGQPGD-KGEGGAPGLPGIAGPRGSPGERGETGPPGPAGFPGAPGQNGEPGGKGE 826
Query: 74 EGG------GLRPVPAVPLPGPAGRSGGPGAWSAQKHGGHLSGRAGGTGRKTEGLARAPG 127
G G P A P PG +G +G PG + G G GL PG
Sbjct: 827 RGAPGEKGEGGPPGVAGP-PGGSGPAGPPGPQGVKGERGSPGGPGAAGFPGARGLPGPPG 885
Query: 128 --GAPGHGLQGGQP 139
G PG G P
Sbjct: 886 SNGNPGPPGPSGSP 899
Score = 32.0 bits (71), Expect = 0.34
Identities = 42/136 (30%), Positives = 51/136 (37%), Gaps = 12/136 (8%)
Query: 11 TPASWSAAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGKAPP-GAAKSTSRVH 69
+P A G P AG G A I + + PG A P GAA R
Sbjct: 469 SPGEPGANGLPGAAGERGAPGFRGPAGPNGIPGEKGPAGERGAPGPAGPRGAAGEPGRDG 528
Query: 70 CRAAEGGGLRPVPAVPLPGPAGRSGGPGAWSAQKHGGHLSGRAGGTG-RKTEGLARAPG- 127
G G+R +P P G G G PG +Q G G G +G R G+ PG
Sbjct: 529 VPG--GPGMRGMPGSP--GGPGSDGKPGPPGSQGESGR-PGPPGPSGPRGQPGVMGFPGP 583
Query: 128 ----GAPGHGLQGGQP 139
GAPG + G P
Sbjct: 584 KGNDGAPGKNGERGGP 599
Score = 32.0 bits (71), Expect = 0.34
Identities = 32/96 (33%), Positives = 39/96 (40%), Gaps = 17/96 (17%)
Query: 53 PPGKAPPGAAKSTSRVHCRAAEGGGLRPVPAVPLPGPAGRSGGPGAWSAQKHGGHLSGRA 112
PPG PG K + GL+ +P GP G +G PG + G G
Sbjct: 619 PPGPTGPGGDKGDTG----PPGPQGLQGLPGTG--GPPGENGKPGEPGPKGDAG-APGAP 671
Query: 113 GGTG-------RKTEGLARAP---GGAPGHGLQGGQ 138
GG G R GLA AP GGA G +GG+
Sbjct: 672 GGKGDAGAPGERGPPGLAGAPGLRGGAGPPGPEGGK 707
Score = 32.0 bits (71), Expect = 0.34
Identities = 36/121 (29%), Positives = 41/121 (33%), Gaps = 15/121 (12%)
Query: 19 GPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGKAPPGAAKSTSRVHCRAAEG--G 76
GPP G+P E G A + P GK GA A G G
Sbjct: 648 GPPGENGKPGEPGPKGDAGAPGA-----------PGGKGDAGAPGERGPPGLAGAPGLRG 696
Query: 77 GLRPVPAVPLPGPAGRSGGPGAWSAQKHGGHLSGRAGGTGRK-TEGLARAPGGAPGHGLQ 135
G P G AG G PGA G + G GG G +G PGG G+
Sbjct: 697 GAGPPGPEGGKGAAGPPGPPGAAGTPGLQG-MPGERGGLGSPGPKGDKGEPGGPGADGVP 755
Query: 136 G 136
G
Sbjct: 756 G 756
Score = 30.0 bits (66), Expect = 1.3
Identities = 31/115 (26%), Positives = 38/115 (33%), Gaps = 3/115 (2%)
Query: 19 GPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPG--KAPPGAAKSTSRVHCRAAEGG 76
GP G P G I + P PPG ++ P ++ S +
Sbjct: 103 GPQGPKGDPGPPGIPGRNGDPGIPGQPGSPGSPGPPGICESCPTGPQNYSPQYDSYDVKS 162
Query: 77 GLRPVPAVPLPGPAGRSGGPGAWSAQKHGGHLSGRAGGTGRKTEGLARAPGGAPG 131
G+ PGPAG G PG H G G G G E P G PG
Sbjct: 163 GVAVGGLAGYPGPAGPPGPPGPPGTSGHPGS-PGSPGYQGPPGEPGQAGPSGPPG 216
Score = 29.6 bits (65), Expect = 1.7
Identities = 40/143 (27%), Positives = 45/143 (31%), Gaps = 25/143 (17%)
Query: 12 PASWSAAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPG-KAPPG-----AAKST 65
P A GP AG+ E G LP PPG K P G K
Sbjct: 215 PGPPGAIGPSGPAGKDGESGRPGRPGERG---------LPGPPGIKGPAGIPGFPGMKGH 265
Query: 66 SRVHCRAAEGG-----GLRPVPAVP----LPGPAGRSGGPGAWSAQKHGGHLSGRAGGTG 116
R E G GL+ +P PGP G G PG G R
Sbjct: 266 RGFDGRNGEKGETGAPGLKGENGLPGENGAPGPMGPRGAPGERGRPGLPGAAGARGNDGA 325
Query: 117 RKTEGLARAPGGAPGHGLQGGQP 139
R ++G P G PG G P
Sbjct: 326 RGSDG-QPGPPGPPGTAGFPGSP 347
Score = 28.5 bits (62), Expect = 3.7
Identities = 32/120 (26%), Positives = 39/120 (32%), Gaps = 32/120 (26%)
Query: 18 AGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGKAPPGAAKSTSRVHCRAAEGGG 77
AGPP G P G S P + PPG +A G
Sbjct: 176 AGPPGPPGPPGTSGHPGSPGS--------------PGYQGPPGEPG-------QAGPSGP 214
Query: 78 LRPVPAVPLPGPAGRSGGPGAWSAQKHGGHLSGRAGGTGRKTEGLARAPGGAPGH-GLQG 136
P A+ GPAG+ G G GR G G + P G PG G++G
Sbjct: 215 PGPPGAIGPSGPAGKDGESGR----------PGRPGERGLPGPPGIKGPAGIPGFPGMKG 264
Score = 27.7 bits (60), Expect = 6.4
Identities = 28/109 (25%), Positives = 34/109 (31%), Gaps = 2/109 (1%)
Query: 2 HGGVRSLVSTPASWSAAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGKAPPGA 61
H G P S AG G P G + S P P G PPG
Sbjct: 1108 HRGFPGNPGAPGSPGPAGQQGAIGSPGPAGPRGPVGPSGPPGKDGTSGHPGPIG--PPGP 1165
Query: 62 AKSTSRVHCRAAEGGGLRPVPAVPLPGPAGRSGGPGAWSAQKHGGHLSG 110
+ + G +P P P P GG GA + GG +G
Sbjct: 1166 RGNRGERGSEGSPGHPGQPGPPGPPGAPGPCCGGVGAAAIAGIGGEKAG 1214
>gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Homo
sapiens]
Length = 1487
Score = 45.4 bits (106), Expect = 3e-05
Identities = 44/147 (29%), Positives = 52/147 (35%), Gaps = 21/147 (14%)
Query: 4 GVRSLVSTPASWSAAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGKA------ 57
GV+ +P + GP G P E TG A + + + PPG
Sbjct: 306 GVKGESGSPGENGSPGPMGPRGLPGERGRTGPAGAAGARGNDGQPGPAGPPGPVGPAGGP 365
Query: 58 ----PPGAAKSTSRVHCRAAEGG-GLRPVPAVP-LPGPAGRSGGPGAWSAQKHGGHLSGR 111
PGA R EG G R P P PGPAG SG PG + G
Sbjct: 366 GFPGAPGAKGEAGPTGARGPEGAQGPRGEPGTPGSPGPAGASGNPGT-------DGIPGA 418
Query: 112 AGGTGRKTEGLARAPGGAPGHGLQGGQ 138
G G G+A APG G G Q
Sbjct: 419 KGSAG--APGIAGAPGFPGPRGPPGPQ 443
Score = 41.2 bits (95), Expect = 6e-04
Identities = 45/134 (33%), Positives = 47/134 (35%), Gaps = 11/134 (8%)
Query: 4 GVRSLVSTPASWSAAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGKAPPGAAK 63
G+R L AAGPP AG PA GA LP PPG G
Sbjct: 627 GLRGLPGKDGETGAAGPPGPAG-PAGERGEQGAPG-----PSGFQGLPGPPGPPGEGGKP 680
Query: 64 STSRVHCRAAEGGGLRPVPAVPLPGPAGRSGGPGAWSAQKHGGHLSGRAGGTGRK-TEGL 122
V A G + P P G G PGA Q G L G G G K G
Sbjct: 681 GDQGVPGEAGAPGLVGPRGERGFP---GERGSPGAQGLQGPRG-LPGTPGTDGPKGASGP 736
Query: 123 ARAPGGAPGHGLQG 136
A PG GLQG
Sbjct: 737 AGPPGAQGPPGLQG 750
Score = 41.2 bits (95), Expect = 6e-04
Identities = 44/136 (32%), Positives = 52/136 (38%), Gaps = 12/136 (8%)
Query: 4 GVRSLVSTPASWSAAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGKAP--PGA 61
G R P AGPP G+P G A +A + P+ P AP G
Sbjct: 822 GERGETGPPGPAGFAGPPGADGQPGAKGEQGEAGQKG----DAGAPGPQGPSGAPGPQGP 877
Query: 62 AKSTSRVHCRAAEGGGLRPVPAVPLPGPAGRSGGPGAWSAQKHGGHLSGRAGGTGRK-TE 120
T R A+G P A PG AGR G PG+ G G +G G K
Sbjct: 878 TGVTGPKGARGAQG----PPGATGFPGAAGRVGPPGSNGNPGPPGP-PGPSGKDGPKGAR 932
Query: 121 GLARAPGGAPGHGLQG 136
G + PG A GLQG
Sbjct: 933 GDSGPPGRAGEPGLQG 948
Score = 38.1 bits (87), Expect = 0.005
Identities = 41/134 (30%), Positives = 49/134 (36%), Gaps = 16/134 (11%)
Query: 4 GVRSLVSTPASWSAAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPG----KAPP 59
G R TP G G P A G A + +K + PG + P
Sbjct: 273 GARGFPGTPG---LPGVKGHRGYPGLDGAKGEAGAPGVKGESGSPGENGSPGPMGPRGLP 329
Query: 60 GAAKSTSRVHCRAAEGGGLRPVPAVPLP--GPAGRSGGPGAWSAQKHGGHLSGRAGGTGR 117
G T A G +P PA P GPAG G PGA A+ G AG TG
Sbjct: 330 GERGRTGPAGAAGARGNDGQPGPAGPPGPVGPAGGPGFPGAPGAK-------GEAGPTGA 382
Query: 118 KTEGLARAPGGAPG 131
+ A+ P G PG
Sbjct: 383 RGPEGAQGPRGEPG 396
Score = 36.6 bits (83), Expect = 0.014
Identities = 38/131 (29%), Positives = 48/131 (36%), Gaps = 11/131 (8%)
Query: 19 GPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGK----APPGAAKSTSRVHCRAAE 74
GP G G P A G A + E A PG P GA+ + A+
Sbjct: 360 GPAGGPGFPGAPGAKGEAGPTGARGPEGAQGPRGEPGTPGSPGPAGASGNPGTDGIPGAK 419
Query: 75 GG----GLRPVPAVPLP-GPAGRSGGPGAWSAQKHGGH--LSGRAGGTGRKTEGLARAPG 127
G G+ P P P GP G G G + G ++G G G K E P
Sbjct: 420 GSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQTGEPGIAGFKGEQGPKGEPGPAGPQ 479
Query: 128 GAPGHGLQGGQ 138
GAPG + G+
Sbjct: 480 GAPGPAGEEGK 490
Score = 35.4 bits (80), Expect = 0.031
Identities = 46/143 (32%), Positives = 51/143 (35%), Gaps = 17/143 (11%)
Query: 4 GVRSLVSTPASWSAAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGKAPPGAAK 63
G R TP S GP +G P G S + A P P G PPG
Sbjct: 390 GPRGEPGTPGS---PGPAGASGNPGTDGIPGAKGSAGAPGIAGAPGFPGPRG--PPGPQG 444
Query: 64 STSRVHCRAAEG-----GGLRPVPAVPLPGPAGRSGGPG-AWSAQKHGGHLSGRAGGTGR 117
+T + + G G PGPAG G PG A K G G GG G
Sbjct: 445 ATGPLGPKGQTGEPGIAGFKGEQGPKGEPGPAGPQGAPGPAGEEGKRGAR--GEPGGVGP 502
Query: 118 -KTEGLARAPG--GAPGH-GLQG 136
G APG G PG GL G
Sbjct: 503 IGPPGERGAPGNRGFPGQDGLAG 525
Score = 35.4 bits (80), Expect = 0.031
Identities = 37/138 (26%), Positives = 45/138 (32%), Gaps = 11/138 (7%)
Query: 4 GVRSLVSTPASWSAAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGKAPPGAAK 63
G+ P GP G TG K + P P G P GA
Sbjct: 426 GIAGAPGFPGPRGPPGPQGATGPLGPKGQTGEPGIAGFKGEQGPKGEPGPAG--PQGAPG 483
Query: 64 STSRVHCRAAEG--GGLRPVPAVPLPGPAGRSGGPGAWSAQKHGGHLSGRAGGTGRKTEG 121
R A G GG+ P+ GP G G PG G L+G G G +
Sbjct: 484 PAGEEGKRGARGEPGGVGPI------GPPGERGAPGNRGFPGQDG-LAGPKGAPGERGPS 536
Query: 122 LARAPGGAPGHGLQGGQP 139
P GA G + G+P
Sbjct: 537 GLAGPKGANGDPGRPGEP 554
Score = 35.0 bits (79), Expect = 0.040
Identities = 40/141 (28%), Positives = 46/141 (32%), Gaps = 28/141 (19%)
Query: 17 AAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGK----------APPGAAKSTS 66
A GPP G P E A G A + PGK PPG A +
Sbjct: 742 AQGPPGLQGMPGERGAAGIAGPKGDRGDVGEKGPEGAPGKDGGRGLTGPIGPPGPAGANG 801
Query: 67 RVHCRAAEG----GGLRPVPA----VPLPGPAGRSGGPGAWSAQKHGGHLSGRAGGTGRK 118
G G R P PGPAG +G PGA G+ G G +
Sbjct: 802 EKGEVGPPGPAGSAGARGAPGERGETGPPGPAGFAGPPGA----------DGQPGAKGEQ 851
Query: 119 TEGLARAPGGAPGHGLQGGQP 139
E + GAPG G P
Sbjct: 852 GEAGQKGDAGAPGPQGPSGAP 872
Score = 34.7 bits (78), Expect = 0.052
Identities = 36/129 (27%), Positives = 46/129 (35%), Gaps = 10/129 (7%)
Query: 12 PASWSAAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGKAP-------PGAAKS 64
P AGPP G P + +G + + + PG+ PG +
Sbjct: 944 PGLQGPAGPPGEKGEPGDDGPSGAEGPPGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGE 1003
Query: 65 TSRVHCRAAEGGGLRPVPAVP--LPGPAGRSGGPGAWSAQKHGGHLSGRAGGTGRKTEGL 122
+ A G P P P L GPAG G G+ A G G AG G + E
Sbjct: 1004 PGKQGAPGASGDRGPPGPVGPPGLTGPAGEPGREGSPGADGPPGR-DGAAGVKGDRGETG 1062
Query: 123 ARAPGGAPG 131
A GAPG
Sbjct: 1063 AVGAPGAPG 1071
Score = 30.8 bits (68), Expect = 0.76
Identities = 41/131 (31%), Positives = 49/131 (37%), Gaps = 26/131 (19%)
Query: 12 PASWSAAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGKAP-PGAAKSTSRVHC 70
P AGP G P E +G A + A+ P PG+ PGA T R
Sbjct: 518 PGQDGLAGPK---GAPGERGPSGLAGP------KGANGDPGRPGEPGLPGARGLTGR--- 565
Query: 71 RAAEGGGLRPVPAVPLPGPAGRSGGPGAWSAQKHGGHL--------SGRAGGTGRKTEGL 122
+ G V PG GR G PG A+ G + +G G G K GL
Sbjct: 566 -PGDAGPQGKVGPSGAPGEDGRPGPPGPQGARGQPGVMGFPGPKGANGEPGKAGEK--GL 622
Query: 123 ARAPG--GAPG 131
APG G PG
Sbjct: 623 PGAPGLRGLPG 633
Score = 29.3 bits (64), Expect = 2.2
Identities = 32/123 (26%), Positives = 39/123 (31%), Gaps = 20/123 (16%)
Query: 19 GPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGKAPPGAAKSTSRVHCRAAEGGGL 78
GPP AG P G P PG + P + + + G
Sbjct: 210 GPPGPAGAPGPQGFQGNPGE------------PGEPGVSGPMGPRGPPGPPGKPGDDG-- 255
Query: 79 RPVPAVPLPGPAGRSGGPGAWSAQKHGG--HLSGRAGGTGRKTEGLARAPGGAPGHGLQG 136
PG AG G PG A+ G L G G G A+ GAPG +
Sbjct: 256 ----EAGKPGKAGERGPPGPQGARGFPGTPGLPGVKGHRGYPGLDGAKGEAGAPGVKGES 311
Query: 137 GQP 139
G P
Sbjct: 312 GSP 314
Score = 29.3 bits (64), Expect = 2.2
Identities = 32/125 (25%), Positives = 41/125 (32%), Gaps = 8/125 (6%)
Query: 12 PASWSAAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGKAPPGAAKSTSRVHCR 71
P + GPP G P G + K S PPG+A + +
Sbjct: 899 PGAAGRVGPPGSNGNPGPPGPPGPSGKDGPKGARGDS---GPPGRAGEPGLQGPAGPPGE 955
Query: 72 AAEGGGLRPVPAVPLPGPAGRSGGPGAWSAQKHGGH-----LSGRAGGTGRKTEGLARAP 126
E G P A PGP G +G G G L G +G G++ A
Sbjct: 956 KGEPGDDGPSGAEGPPGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGASGD 1015
Query: 127 GGAPG 131
G PG
Sbjct: 1016 RGPPG 1020
Score = 27.7 bits (60), Expect = 6.4
Identities = 27/72 (37%), Positives = 31/72 (43%), Gaps = 14/72 (19%)
Query: 80 PVPAVPLPGPAGRSGGPGAWSAQKHGGHLSGRAGGT---------GRKTEGLARAPGGAP 130
P P P PGP G G G ++AQ GG +AGG G P GAP
Sbjct: 161 PGPPGP-PGPPGPPGLGGNFAAQMAGG-FDEKAGGAQLGVMQGPMGPMGPRGPPGPAGAP 218
Query: 131 G-HGLQG--GQP 139
G G QG G+P
Sbjct: 219 GPQGFQGNPGEP 230
>gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Homo
sapiens]
Length = 1418
Score = 45.4 bits (106), Expect = 3e-05
Identities = 44/147 (29%), Positives = 52/147 (35%), Gaps = 21/147 (14%)
Query: 4 GVRSLVSTPASWSAAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGKA------ 57
GV+ +P + GP G P E TG A + + + PPG
Sbjct: 237 GVKGESGSPGENGSPGPMGPRGLPGERGRTGPAGAAGARGNDGQPGPAGPPGPVGPAGGP 296
Query: 58 ----PPGAAKSTSRVHCRAAEGG-GLRPVPAVP-LPGPAGRSGGPGAWSAQKHGGHLSGR 111
PGA R EG G R P P PGPAG SG PG + G
Sbjct: 297 GFPGAPGAKGEAGPTGARGPEGAQGPRGEPGTPGSPGPAGASGNPGT-------DGIPGA 349
Query: 112 AGGTGRKTEGLARAPGGAPGHGLQGGQ 138
G G G+A APG G G Q
Sbjct: 350 KGSAG--APGIAGAPGFPGPRGPPGPQ 374
Score = 41.2 bits (95), Expect = 6e-04
Identities = 45/134 (33%), Positives = 47/134 (35%), Gaps = 11/134 (8%)
Query: 4 GVRSLVSTPASWSAAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGKAPPGAAK 63
G+R L AAGPP AG PA GA LP PPG G
Sbjct: 558 GLRGLPGKDGETGAAGPPGPAG-PAGERGEQGAPG-----PSGFQGLPGPPGPPGEGGKP 611
Query: 64 STSRVHCRAAEGGGLRPVPAVPLPGPAGRSGGPGAWSAQKHGGHLSGRAGGTGRK-TEGL 122
V A G + P P G G PGA Q G L G G G K G
Sbjct: 612 GDQGVPGEAGAPGLVGPRGERGFP---GERGSPGAQGLQGPRG-LPGTPGTDGPKGASGP 667
Query: 123 ARAPGGAPGHGLQG 136
A PG GLQG
Sbjct: 668 AGPPGAQGPPGLQG 681
Score = 41.2 bits (95), Expect = 6e-04
Identities = 44/136 (32%), Positives = 52/136 (38%), Gaps = 12/136 (8%)
Query: 4 GVRSLVSTPASWSAAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGKAP--PGA 61
G R P AGPP G+P G A +A + P+ P AP G
Sbjct: 753 GERGETGPPGPAGFAGPPGADGQPGAKGEQGEAGQKG----DAGAPGPQGPSGAPGPQGP 808
Query: 62 AKSTSRVHCRAAEGGGLRPVPAVPLPGPAGRSGGPGAWSAQKHGGHLSGRAGGTGRK-TE 120
T R A+G P A PG AGR G PG+ G G +G G K
Sbjct: 809 TGVTGPKGARGAQG----PPGATGFPGAAGRVGPPGSNGNPGPPGP-PGPSGKDGPKGAR 863
Query: 121 GLARAPGGAPGHGLQG 136
G + PG A GLQG
Sbjct: 864 GDSGPPGRAGEPGLQG 879
Score = 38.1 bits (87), Expect = 0.005
Identities = 41/134 (30%), Positives = 49/134 (36%), Gaps = 16/134 (11%)
Query: 4 GVRSLVSTPASWSAAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPG----KAPP 59
G R TP G G P A G A + +K + PG + P
Sbjct: 204 GARGFPGTPG---LPGVKGHRGYPGLDGAKGEAGAPGVKGESGSPGENGSPGPMGPRGLP 260
Query: 60 GAAKSTSRVHCRAAEGGGLRPVPAVPLP--GPAGRSGGPGAWSAQKHGGHLSGRAGGTGR 117
G T A G +P PA P GPAG G PGA A+ G AG TG
Sbjct: 261 GERGRTGPAGAAGARGNDGQPGPAGPPGPVGPAGGPGFPGAPGAK-------GEAGPTGA 313
Query: 118 KTEGLARAPGGAPG 131
+ A+ P G PG
Sbjct: 314 RGPEGAQGPRGEPG 327
Score = 36.6 bits (83), Expect = 0.014
Identities = 38/131 (29%), Positives = 48/131 (36%), Gaps = 11/131 (8%)
Query: 19 GPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGK----APPGAAKSTSRVHCRAAE 74
GP G G P A G A + E A PG P GA+ + A+
Sbjct: 291 GPAGGPGFPGAPGAKGEAGPTGARGPEGAQGPRGEPGTPGSPGPAGASGNPGTDGIPGAK 350
Query: 75 GG----GLRPVPAVPLP-GPAGRSGGPGAWSAQKHGGH--LSGRAGGTGRKTEGLARAPG 127
G G+ P P P GP G G G + G ++G G G K E P
Sbjct: 351 GSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQTGEPGIAGFKGEQGPKGEPGPAGPQ 410
Query: 128 GAPGHGLQGGQ 138
GAPG + G+
Sbjct: 411 GAPGPAGEEGK 421
Score = 35.4 bits (80), Expect = 0.031
Identities = 46/143 (32%), Positives = 51/143 (35%), Gaps = 17/143 (11%)
Query: 4 GVRSLVSTPASWSAAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGKAPPGAAK 63
G R TP S GP +G P G S + A P P G PPG
Sbjct: 321 GPRGEPGTPGS---PGPAGASGNPGTDGIPGAKGSAGAPGIAGAPGFPGPRG--PPGPQG 375
Query: 64 STSRVHCRAAEG-----GGLRPVPAVPLPGPAGRSGGPG-AWSAQKHGGHLSGRAGGTGR 117
+T + + G G PGPAG G PG A K G G GG G
Sbjct: 376 ATGPLGPKGQTGEPGIAGFKGEQGPKGEPGPAGPQGAPGPAGEEGKRGAR--GEPGGVGP 433
Query: 118 -KTEGLARAPG--GAPGH-GLQG 136
G APG G PG GL G
Sbjct: 434 IGPPGERGAPGNRGFPGQDGLAG 456
Score = 35.4 bits (80), Expect = 0.031
Identities = 37/138 (26%), Positives = 45/138 (32%), Gaps = 11/138 (7%)
Query: 4 GVRSLVSTPASWSAAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGKAPPGAAK 63
G+ P GP G TG K + P P G P GA
Sbjct: 357 GIAGAPGFPGPRGPPGPQGATGPLGPKGQTGEPGIAGFKGEQGPKGEPGPAG--PQGAPG 414
Query: 64 STSRVHCRAAEG--GGLRPVPAVPLPGPAGRSGGPGAWSAQKHGGHLSGRAGGTGRKTEG 121
R A G GG+ P+ GP G G PG G L+G G G +
Sbjct: 415 PAGEEGKRGARGEPGGVGPI------GPPGERGAPGNRGFPGQDG-LAGPKGAPGERGPS 467
Query: 122 LARAPGGAPGHGLQGGQP 139
P GA G + G+P
Sbjct: 468 GLAGPKGANGDPGRPGEP 485
Score = 35.0 bits (79), Expect = 0.040
Identities = 40/141 (28%), Positives = 46/141 (32%), Gaps = 28/141 (19%)
Query: 17 AAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGK----------APPGAAKSTS 66
A GPP G P E A G A + PGK PPG A +
Sbjct: 673 AQGPPGLQGMPGERGAAGIAGPKGDRGDVGEKGPEGAPGKDGGRGLTGPIGPPGPAGANG 732
Query: 67 RVHCRAAEG----GGLRPVPA----VPLPGPAGRSGGPGAWSAQKHGGHLSGRAGGTGRK 118
G G R P PGPAG +G PGA G+ G G +
Sbjct: 733 EKGEVGPPGPAGSAGARGAPGERGETGPPGPAGFAGPPGA----------DGQPGAKGEQ 782
Query: 119 TEGLARAPGGAPGHGLQGGQP 139
E + GAPG G P
Sbjct: 783 GEAGQKGDAGAPGPQGPSGAP 803
Score = 34.7 bits (78), Expect = 0.052
Identities = 36/129 (27%), Positives = 46/129 (35%), Gaps = 10/129 (7%)
Query: 12 PASWSAAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGKAP-------PGAAKS 64
P AGPP G P + +G + + + PG+ PG +
Sbjct: 875 PGLQGPAGPPGEKGEPGDDGPSGAEGPPGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGE 934
Query: 65 TSRVHCRAAEGGGLRPVPAVP--LPGPAGRSGGPGAWSAQKHGGHLSGRAGGTGRKTEGL 122
+ A G P P P L GPAG G G+ A G G AG G + E
Sbjct: 935 PGKQGAPGASGDRGPPGPVGPPGLTGPAGEPGREGSPGADGPPGR-DGAAGVKGDRGETG 993
Query: 123 ARAPGGAPG 131
A GAPG
Sbjct: 994 AVGAPGAPG 1002
Score = 30.8 bits (68), Expect = 0.76
Identities = 41/131 (31%), Positives = 49/131 (37%), Gaps = 26/131 (19%)
Query: 12 PASWSAAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGKAP-PGAAKSTSRVHC 70
P AGP G P E +G A + A+ P PG+ PGA T R
Sbjct: 449 PGQDGLAGPK---GAPGERGPSGLAGP------KGANGDPGRPGEPGLPGARGLTGR--- 496
Query: 71 RAAEGGGLRPVPAVPLPGPAGRSGGPGAWSAQKHGGHL--------SGRAGGTGRKTEGL 122
+ G V PG GR G PG A+ G + +G G G K GL
Sbjct: 497 -PGDAGPQGKVGPSGAPGEDGRPGPPGPQGARGQPGVMGFPGPKGANGEPGKAGEK--GL 553
Query: 123 ARAPG--GAPG 131
APG G PG
Sbjct: 554 PGAPGLRGLPG 564
Score = 29.3 bits (64), Expect = 2.2
Identities = 32/123 (26%), Positives = 39/123 (31%), Gaps = 20/123 (16%)
Query: 19 GPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGKAPPGAAKSTSRVHCRAAEGGGL 78
GPP AG P G P PG + P + + + G
Sbjct: 141 GPPGPAGAPGPQGFQGNPGE------------PGEPGVSGPMGPRGPPGPPGKPGDDG-- 186
Query: 79 RPVPAVPLPGPAGRSGGPGAWSAQKHGG--HLSGRAGGTGRKTEGLARAPGGAPGHGLQG 136
PG AG G PG A+ G L G G G A+ GAPG +
Sbjct: 187 ----EAGKPGKAGERGPPGPQGARGFPGTPGLPGVKGHRGYPGLDGAKGEAGAPGVKGES 242
Query: 137 GQP 139
G P
Sbjct: 243 GSP 245
Score = 29.3 bits (64), Expect = 2.2
Identities = 32/125 (25%), Positives = 41/125 (32%), Gaps = 8/125 (6%)
Query: 12 PASWSAAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGKAPPGAAKSTSRVHCR 71
P + GPP G P G + K S PPG+A + +
Sbjct: 830 PGAAGRVGPPGSNGNPGPPGPPGPSGKDGPKGARGDS---GPPGRAGEPGLQGPAGPPGE 886
Query: 72 AAEGGGLRPVPAVPLPGPAGRSGGPGAWSAQKHGGH-----LSGRAGGTGRKTEGLARAP 126
E G P A PGP G +G G G L G +G G++ A
Sbjct: 887 KGEPGDDGPSGAEGPPGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGASGD 946
Query: 127 GGAPG 131
G PG
Sbjct: 947 RGPPG 951
Score = 27.7 bits (60), Expect = 6.4
Identities = 27/72 (37%), Positives = 31/72 (43%), Gaps = 14/72 (19%)
Query: 80 PVPAVPLPGPAGRSGGPGAWSAQKHGGHLSGRAGGT---------GRKTEGLARAPGGAP 130
P P P PGP G G G ++AQ GG +AGG G P GAP
Sbjct: 92 PGPPGP-PGPPGPPGLGGNFAAQMAGG-FDEKAGGAQLGVMQGPMGPMGPRGPPGPAGAP 149
Query: 131 G-HGLQG--GQP 139
G G QG G+P
Sbjct: 150 GPQGFQGNPGEP 161
>gi|18105032 type X collagen alpha 1 precursor [Homo sapiens]
Length = 680
Score = 44.7 bits (104), Expect = 5e-05
Identities = 41/121 (33%), Positives = 48/121 (39%), Gaps = 26/121 (21%)
Query: 21 PDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGKAPPGAAKSTSRVHCRAAEGGGLRP 80
P+G G+P A G K + A + PPG PPG K
Sbjct: 260 PEGIGKPGAAGAPGQPGIPGTKGLPGAPGIAGPPG--PPGFGK----------------- 300
Query: 81 VPAVP----LPGPAGRSGGPGAWSAQKHGGHLSGRAGGTGRKTEGLARAPGGAPG-HGLQ 135
P +P GPAG GGPGA Q G L G+ G TG + P G PG HGL
Sbjct: 301 -PGLPGLKGERGPAGLPGGPGAKGEQGPAG-LPGKPGLTGPPGNMGPQGPKGIPGSHGLP 358
Query: 136 G 136
G
Sbjct: 359 G 359
Score = 35.0 bits (79), Expect = 0.040
Identities = 42/148 (28%), Positives = 47/148 (31%), Gaps = 17/148 (11%)
Query: 4 GVRSLVSTPASWSAAGPPDGAGRPA------EHEATGGASSLHIKCMEAASLLPR----- 52
G + L P GPP G G+P E G K + + LP
Sbjct: 279 GTKGLPGAPGIAGPPGPP-GFGKPGLPGLKGERGPAGLPGGPGAKGEQGPAGLPGKPGLT 337
Query: 53 -PPGKAPPGAAKSTSRVHCRAAEGGGLRPVPAVPLPGPAGRSGGPGAWSAQKHGGHLSGR 111
PPG P K H G P PG G G PG S K G G+
Sbjct: 338 GPPGNMGPQGPKGIPGSHGLPGPKGETGPAGPAGYPGAKGERGSPG--SDGKPG--YPGK 393
Query: 112 AGGTGRKTEGLARAPGGAPGHGLQGGQP 139
G G K P G PG G G P
Sbjct: 394 PGLDGPKGNPGLPGPKGDPGVGGPPGLP 421
Score = 28.1 bits (61), Expect = 4.9
Identities = 34/118 (28%), Positives = 42/118 (35%), Gaps = 17/118 (14%)
Query: 19 GPPDGAGRPAEHEATG--GASSLHIKCMEAASLLPRPPGKAPPGAAKSTSRVHCRAAEGG 76
GPP AG +G G ++ LP PPG + G + + E G
Sbjct: 63 GPPGPAGPRGHPGPSGPPGKPGYGSPGLQGEPGLPGPPGPSAVGKP-GVPGLPGKPGERG 121
Query: 77 GLRP---VPAVPLPGPAGRSGGPGAWSAQKHGGHLSGRAGGTGRKTEGLARAPGGAPG 131
P V LPGP G G PG G + G+ G G P GAPG
Sbjct: 122 PYGPKGDVGPAGLPGPRGPPGPPGI--PGPAGISVPGKPGQQG---------PTGAPG 168
Score = 27.3 bits (59), Expect = 8.4
Identities = 20/52 (38%), Positives = 21/52 (40%), Gaps = 12/52 (23%)
Query: 87 PGPAGRSGGPGAWSAQKHGGHLSGRAGGTGRKTEGLARAPG--GAPGHGLQG 136
PGPAG G PG SG G G + GL PG G PG G
Sbjct: 65 PGPAGPRGHPGP----------SGPPGKPGYGSPGLQGEPGLPGPPGPSAVG 106
>gi|4826998 splicing factor proline/glutamine rich (polypyrimidine
tract binding protein associated) [Homo sapiens]
Length = 707
Score = 44.7 bits (104), Expect = 5e-05
Identities = 45/135 (33%), Positives = 50/135 (37%), Gaps = 27/135 (20%)
Query: 12 PASWSAAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPG---KAPPGAAKST--- 65
PA + PP + P T GA P PP APPGA T
Sbjct: 117 PAPGVGSAPPASSSAPPATPPTSGAPP-----GSGPGPTPTPPPAVTSAPPGAPPPTPPS 171
Query: 66 SRVHCRAAEGGGLRPVPA-VPLPGPAGRSGGPGAWSAQKHGGHLSGRAGGTGRKTEGLAR 124
S V + GG P PA VP PGP G GPG GG G+ G +
Sbjct: 172 SGVPTTPPQAGGPPPPPAAVPGPGP-GPKQGPGP------GGPKGGKMPGGPK------- 217
Query: 125 APGGAPGHGLQGGQP 139
PGG PG GG P
Sbjct: 218 -PGGGPGLSTPGGHP 231
>gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Homo
sapiens]
Length = 1818
Score = 44.3 bits (103), Expect = 7e-05
Identities = 42/130 (32%), Positives = 52/130 (40%), Gaps = 19/130 (14%)
Query: 19 GPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGKAPPGAAKSTSRVHCRAAEGGGL 78
GPP G P E + G A + L RP + PPG A + +G
Sbjct: 1063 GPPGPVGSPGERGSAGTAGPI--------GLPGRPGPQGPPGPAGEKGAPGEKGPQGPAG 1114
Query: 79 RPVPAVP--LPGPAGRSGGPGAWSAQKHGGHLSGRAGGTGRKTE-------GLARAPGGA 129
R P LPGPAG +G PG + G G+ G G K E GL + P GA
Sbjct: 1115 RDGVQGPVGLPGPAGPAGSPGEDGDKGEIGE-PGQKGSKGDKGENGPPGPPGL-QGPVGA 1172
Query: 130 PGHGLQGGQP 139
PG G+P
Sbjct: 1173 PGIAGGDGEP 1182
Score = 43.5 bits (101), Expect = 1e-04
Identities = 43/131 (32%), Positives = 52/131 (39%), Gaps = 23/131 (17%)
Query: 17 AAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGKAPPGAAKSTSRVHCRAAEGG 76
AAGPP G P + G + P PPG+ PG A + +G
Sbjct: 1301 AAGPPGAKGPPGDDGPKGNPGPVGFPGD------PGPPGE--PGPAGQDGVGGDKGEDGD 1352
Query: 77 GLRPVPAVPL-----PGPAGRSGGPGAWSAQKHGGHLSGRAGGTGRKTEGLARAPGGAPG 131
+P P P PGP G+ G PGA A+ GR G G K E A P G G
Sbjct: 1353 PGQPGPPGPSGEAGPPGPPGKRGPPGAAGAE-------GRQGEKGAKGEAGAEGPPGKTG 1405
Query: 132 H-GLQG--GQP 139
G QG G+P
Sbjct: 1406 PVGPQGPAGKP 1416
Score = 40.0 bits (92), Expect = 0.001
Identities = 40/133 (30%), Positives = 43/133 (32%), Gaps = 18/133 (13%)
Query: 12 PASWSAAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGK-------APPGAAKS 64
P G P AG E G K E A P PPG PPG
Sbjct: 1164 PGLQGPVGAPGIAGGDGEPGPRGQQGMFGQKGDEGARGFPGPPGPIGLQGLPGPPG---- 1219
Query: 65 TSRVHCRAAEGGGLRPVPAVPLPGPAGRSGGPGAWSAQKHGGHLSGRAGGTGRKTEGLAR 124
E G + P+ PGP G G GA Q G + G GG G K E
Sbjct: 1220 ------EKGENGDVGPMGPPGPPGPRGPQGPNGADGPQGPPGSV-GSVGGVGEKGEPGEA 1272
Query: 125 APGGAPGHGLQGG 137
G PG GG
Sbjct: 1273 GNPGPPGEAGVGG 1285
Score = 37.7 bits (86), Expect = 0.006
Identities = 44/138 (31%), Positives = 48/138 (34%), Gaps = 16/138 (11%)
Query: 12 PASWSAAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGK----APPGAAKSTSR 67
P AGPP G+ A G K + + PPGK P G A
Sbjct: 1359 PGPSGEAGPPGPPGKRGPPGAAGAEGRQGEKGAKGEAGAEGPPGKTGPVGPQGPAGKPGP 1418
Query: 68 VHCRAAEGGGLRPVPAVPLPGPAGRSGGPGAWSAQKHGGHLSGRAGGTGRKTE----GLA 123
R G PV LPG AG+ G PG G L G G G K GL
Sbjct: 1419 EGLRGIPG----PVGEQGLPGAAGQDGPPGPMGPPGLPG-LKGDPGSKGEKGHPGLIGLI 1473
Query: 124 RAPG--GAPG-HGLQGGQ 138
PG G G GL G Q
Sbjct: 1474 GPPGEQGEKGDRGLPGTQ 1491
Score = 32.7 bits (73), Expect = 0.20
Identities = 34/128 (26%), Positives = 40/128 (31%), Gaps = 4/128 (3%)
Query: 12 PASWSAAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGKAPPGAAKSTSRVHCR 71
P GP G + G + K + P PPG+A G K
Sbjct: 1236 PGPRGPQGPNGADGPQGPPGSVGSVGGVGEKGEPGEAGNPGPPGEAGVGGPKGERGEKGE 1295
Query: 72 AAEGGGLRPVPAVPLPGPAGRSGGPGAWSAQKHGGHLSGRAGGTGRKTEGLARAPGGAPG 131
A G P A PG G G PG G G G G+ G + G PG
Sbjct: 1296 AGPPGAAGPPGAKGPPGDDGPKGNPGPVGFPGDPGP-PGEPGPAGQDGVGGDKGEDGDPG 1354
Query: 132 HGLQGGQP 139
Q G P
Sbjct: 1355 ---QPGPP 1359
Score = 31.6 bits (70), Expect = 0.44
Identities = 22/56 (39%), Positives = 26/56 (46%), Gaps = 6/56 (10%)
Query: 87 PGPAGRSGGPGAWSAQKHGGHLS--GRAGGTGRKTEGLARAPG--GAPGHGLQGGQ 138
PGP G+ G PG G + G G G+ GLA PG G PGH + GQ
Sbjct: 699 PGPPGQQGNPGPQGLPGPQGPIGPPGEKGPQGK--PGLAGLPGADGPPGHPGKEGQ 752
Score = 30.4 bits (67), Expect = 0.99
Identities = 35/128 (27%), Positives = 40/128 (31%), Gaps = 25/128 (19%)
Query: 4 GVRSLVSTPASWSAAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGKAPPGAAK 63
G R + P GP G TG + S PPG PPG
Sbjct: 880 GARGVAGKPGPRGQRGPTGPRGSRGARGPTGKPGP------KGTSGGDGPPG--PPG--- 928
Query: 64 STSRVHCRAAEGGGLRPVPAVPLPGPAGRSGGPGAWSAQKHGGHLSGRAGGTGRKTEGLA 123
E G P V PGP G G PG H G+ G TG + +
Sbjct: 929 ----------ERGPQGPQGPVGFPGPKGPPGPPGKDGLPGH----PGQRGETGFQGKTGP 974
Query: 124 RAPGGAPG 131
PGG G
Sbjct: 975 PGPGGVVG 982
Score = 29.6 bits (65), Expect = 1.7
Identities = 34/123 (27%), Positives = 41/123 (33%), Gaps = 10/123 (8%)
Query: 12 PASWSAAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGK-APPGAAKSTSRVHC 70
P + GPP G P G S K L PPG+ G
Sbjct: 1434 PGAAGQDGPPGPMGPPGLPGLKGDPGSKGEKGHPGLIGLIGPPGEQGEKGDRGLPGTQGS 1493
Query: 71 RAAEGGGLRPVPAVPLPGPAGRSGGPGAWSAQKHGGHL--SGRAGGTGRKTEGLARAPGG 128
A+G G +PGPAG G PG G G G G+K + P G
Sbjct: 1494 PGAKGDG-------GIPGPAGPLGPPGPPGLPGPQGPKGNKGSTGPAGQKGDSGLPGPPG 1546
Query: 129 APG 131
+PG
Sbjct: 1547 SPG 1549
Score = 28.9 bits (63), Expect = 2.9
Identities = 32/138 (23%), Positives = 43/138 (31%), Gaps = 7/138 (5%)
Query: 4 GVRSLVSTPASWSAAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGKAPPGAAK 63
G++ P GPP G P G ++ + + P + A
Sbjct: 469 GLQGPTGPPGDPGDRGPPGRPGLPGADGLPGPPGTMLMLPFRYGGDGSKGPTISAQEAQA 528
Query: 64 STSRVHCRAAEGGGLRPVPAVPLPGPAGRSGGPGAWSAQKHGG-----HLSGRAGGTGRK 118
R A G P+ PGP G G GA G + G G TG+
Sbjct: 529 QAILQQARIALRGPPGPMGLTGRPGPVGGPGSSGAKGESGDPGPQGPRGVQGPPGPTGK- 587
Query: 119 TEGLARAPGGAPGHGLQG 136
G PG G G+ G
Sbjct: 588 -PGKRGRPGADGGRGMPG 604
Score = 28.5 bits (62), Expect = 3.7
Identities = 40/143 (27%), Positives = 48/143 (33%), Gaps = 25/143 (17%)
Query: 4 GVRSLVSTPASWSAAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGKA----PP 59
G + V P GPP G P H G + K PPG P
Sbjct: 934 GPQGPVGFPGPKGPPGPPGKDGLPG-HPGQRGETGFQGKT--------GPPGPGGVVGPQ 984
Query: 60 GAAKSTSRVHCRAAEGGGLRPVPAVPLPGPAGRS---GGPGAWSAQKHGGHLSGRAGGTG 116
G T + R G P LPG AG+ G PG +SG+ G G
Sbjct: 985 GPTGETGPIGERGHPGPP-GPPGEQGLPGAAGKEGAKGDPGPQG-------ISGKDGPAG 1036
Query: 117 -RKTEGLARAPGGAPGHGLQGGQ 138
R G PG GL+GG+
Sbjct: 1037 LRGFPGERGLPGAQGAPGLKGGE 1059
Score = 27.3 bits (59), Expect = 8.4
Identities = 24/85 (28%), Positives = 32/85 (37%), Gaps = 2/85 (2%)
Query: 55 GKAPPGAAKSTSRVHCRAAEGGGLRPVPAVPLPGPAGRSGGPGAWSAQKHGGHLSGRAGG 114
G+ P +S + + G P PGP G+ G G A G + G G
Sbjct: 550 GRPGPVGGPGSSGAKGESGDPGPQGPRGVQGPPGPTGKPGKRGRPGAD-GGRGMPGEPGA 608
Query: 115 TG-RKTEGLARAPGGAPGHGLQGGQ 138
G R +GL PG G +G Q
Sbjct: 609 KGDRGFDGLPGLPGDKGHRGERGPQ 633
Score = 27.3 bits (59), Expect = 8.4
Identities = 30/92 (32%), Positives = 33/92 (35%), Gaps = 15/92 (16%)
Query: 51 PRPPGKA----PPGAAKSTSRVHCRAAEGGGLRPVPAVPLPGPAGRSGGPGAWSAQKHGG 106
P PG A PPG + G P P LPGP G G PG Q G
Sbjct: 675 PGQPGMAGVDGPPGPKGNMGPQGEPGPPGQQGNPGPQ-GLPGPQGPIGPPGEKGPQGKPG 733
Query: 107 HLSGRAGGTGRKTEGLARAPGGAPGHGLQGGQ 138
L+G G G P G PG Q G+
Sbjct: 734 -LAGLPGADG---------PPGHPGKEGQSGE 755
>gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Homo
sapiens]
Length = 1767
Score = 44.3 bits (103), Expect = 7e-05
Identities = 42/130 (32%), Positives = 52/130 (40%), Gaps = 19/130 (14%)
Query: 19 GPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGKAPPGAAKSTSRVHCRAAEGGGL 78
GPP G P E + G A + L RP + PPG A + +G
Sbjct: 1012 GPPGPVGSPGERGSAGTAGPI--------GLPGRPGPQGPPGPAGEKGAPGEKGPQGPAG 1063
Query: 79 RPVPAVP--LPGPAGRSGGPGAWSAQKHGGHLSGRAGGTGRKTE-------GLARAPGGA 129
R P LPGPAG +G PG + G G+ G G K E GL + P GA
Sbjct: 1064 RDGVQGPVGLPGPAGPAGSPGEDGDKGEIGE-PGQKGSKGDKGENGPPGPPGL-QGPVGA 1121
Query: 130 PGHGLQGGQP 139
PG G+P
Sbjct: 1122 PGIAGGDGEP 1131
Score = 43.5 bits (101), Expect = 1e-04
Identities = 43/131 (32%), Positives = 52/131 (39%), Gaps = 23/131 (17%)
Query: 17 AAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGKAPPGAAKSTSRVHCRAAEGG 76
AAGPP G P + G + P PPG+ PG A + +G
Sbjct: 1250 AAGPPGAKGPPGDDGPKGNPGPVGFPGD------PGPPGE--PGPAGQDGVGGDKGEDGD 1301
Query: 77 GLRPVPAVPL-----PGPAGRSGGPGAWSAQKHGGHLSGRAGGTGRKTEGLARAPGGAPG 131
+P P P PGP G+ G PGA A+ GR G G K E A P G G
Sbjct: 1302 PGQPGPPGPSGEAGPPGPPGKRGPPGAAGAE-------GRQGEKGAKGEAGAEGPPGKTG 1354
Query: 132 H-GLQG--GQP 139
G QG G+P
Sbjct: 1355 PVGPQGPAGKP 1365
Score = 40.0 bits (92), Expect = 0.001
Identities = 40/133 (30%), Positives = 43/133 (32%), Gaps = 18/133 (13%)
Query: 12 PASWSAAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGK-------APPGAAKS 64
P G P AG E G K E A P PPG PPG
Sbjct: 1113 PGLQGPVGAPGIAGGDGEPGPRGQQGMFGQKGDEGARGFPGPPGPIGLQGLPGPPG---- 1168
Query: 65 TSRVHCRAAEGGGLRPVPAVPLPGPAGRSGGPGAWSAQKHGGHLSGRAGGTGRKTEGLAR 124
E G + P+ PGP G G GA Q G + G GG G K E
Sbjct: 1169 ------EKGENGDVGPMGPPGPPGPRGPQGPNGADGPQGPPGSV-GSVGGVGEKGEPGEA 1221
Query: 125 APGGAPGHGLQGG 137
G PG GG
Sbjct: 1222 GNPGPPGEAGVGG 1234
Score = 37.7 bits (86), Expect = 0.006
Identities = 44/138 (31%), Positives = 48/138 (34%), Gaps = 16/138 (11%)
Query: 12 PASWSAAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGK----APPGAAKSTSR 67
P AGPP G+ A G K + + PPGK P G A
Sbjct: 1308 PGPSGEAGPPGPPGKRGPPGAAGAEGRQGEKGAKGEAGAEGPPGKTGPVGPQGPAGKPGP 1367
Query: 68 VHCRAAEGGGLRPVPAVPLPGPAGRSGGPGAWSAQKHGGHLSGRAGGTGRKTE----GLA 123
R G PV LPG AG+ G PG G L G G G K GL
Sbjct: 1368 EGLRGIPG----PVGEQGLPGAAGQDGPPGPMGPPGLPG-LKGDPGSKGEKGHPGLIGLI 1422
Query: 124 RAPG--GAPG-HGLQGGQ 138
PG G G GL G Q
Sbjct: 1423 GPPGEQGEKGDRGLPGTQ 1440
Score = 32.7 bits (73), Expect = 0.20
Identities = 34/128 (26%), Positives = 40/128 (31%), Gaps = 4/128 (3%)
Query: 12 PASWSAAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGKAPPGAAKSTSRVHCR 71
P GP G + G + K + P PPG+A G K
Sbjct: 1185 PGPRGPQGPNGADGPQGPPGSVGSVGGVGEKGEPGEAGNPGPPGEAGVGGPKGERGEKGE 1244
Query: 72 AAEGGGLRPVPAVPLPGPAGRSGGPGAWSAQKHGGHLSGRAGGTGRKTEGLARAPGGAPG 131
A G P A PG G G PG G G G G+ G + G PG
Sbjct: 1245 AGPPGAAGPPGAKGPPGDDGPKGNPGPVGFPGDPGP-PGEPGPAGQDGVGGDKGEDGDPG 1303
Query: 132 HGLQGGQP 139
Q G P
Sbjct: 1304 ---QPGPP 1308
Score = 31.6 bits (70), Expect = 0.44
Identities = 22/56 (39%), Positives = 26/56 (46%), Gaps = 6/56 (10%)
Query: 87 PGPAGRSGGPGAWSAQKHGGHLS--GRAGGTGRKTEGLARAPG--GAPGHGLQGGQ 138
PGP G+ G PG G + G G G+ GLA PG G PGH + GQ
Sbjct: 648 PGPPGQQGNPGPQGLPGPQGPIGPPGEKGPQGK--PGLAGLPGADGPPGHPGKEGQ 701
Score = 30.4 bits (67), Expect = 0.99
Identities = 35/128 (27%), Positives = 40/128 (31%), Gaps = 25/128 (19%)
Query: 4 GVRSLVSTPASWSAAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGKAPPGAAK 63
G R + P GP G TG + S PPG PPG
Sbjct: 829 GARGVAGKPGPRGQRGPTGPRGSRGARGPTGKPGP------KGTSGGDGPPG--PPG--- 877
Query: 64 STSRVHCRAAEGGGLRPVPAVPLPGPAGRSGGPGAWSAQKHGGHLSGRAGGTGRKTEGLA 123
E G P V PGP G G PG H G+ G TG + +
Sbjct: 878 ----------ERGPQGPQGPVGFPGPKGPPGPPGKDGLPGH----PGQRGETGFQGKTGP 923
Query: 124 RAPGGAPG 131
PGG G
Sbjct: 924 PGPGGVVG 931
Score = 29.6 bits (65), Expect = 1.7
Identities = 34/123 (27%), Positives = 41/123 (33%), Gaps = 10/123 (8%)
Query: 12 PASWSAAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGK-APPGAAKSTSRVHC 70
P + GPP G P G S K L PPG+ G
Sbjct: 1383 PGAAGQDGPPGPMGPPGLPGLKGDPGSKGEKGHPGLIGLIGPPGEQGEKGDRGLPGTQGS 1442
Query: 71 RAAEGGGLRPVPAVPLPGPAGRSGGPGAWSAQKHGGHL--SGRAGGTGRKTEGLARAPGG 128
A+G G +PGPAG G PG G G G G+K + P G
Sbjct: 1443 PGAKGDG-------GIPGPAGPLGPPGPPGLPGPQGPKGNKGSTGPAGQKGDSGLPGPPG 1495
Query: 129 APG 131
+PG
Sbjct: 1496 SPG 1498
Score = 28.9 bits (63), Expect = 2.9
Identities = 32/138 (23%), Positives = 43/138 (31%), Gaps = 7/138 (5%)
Query: 4 GVRSLVSTPASWSAAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGKAPPGAAK 63
G++ P GPP G P G ++ + + P + A
Sbjct: 418 GLQGPTGPPGDPGDRGPPGRPGLPGADGLPGPPGTMLMLPFRYGGDGSKGPTISAQEAQA 477
Query: 64 STSRVHCRAAEGGGLRPVPAVPLPGPAGRSGGPGAWSAQKHGG-----HLSGRAGGTGRK 118
R A G P+ PGP G G GA G + G G TG+
Sbjct: 478 QAILQQARIALRGPPGPMGLTGRPGPVGGPGSSGAKGESGDPGPQGPRGVQGPPGPTGK- 536
Query: 119 TEGLARAPGGAPGHGLQG 136
G PG G G+ G
Sbjct: 537 -PGKRGRPGADGGRGMPG 553
Score = 28.5 bits (62), Expect = 3.7
Identities = 40/143 (27%), Positives = 48/143 (33%), Gaps = 25/143 (17%)
Query: 4 GVRSLVSTPASWSAAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGKA----PP 59
G + V P GPP G P H G + K PPG P
Sbjct: 883 GPQGPVGFPGPKGPPGPPGKDGLPG-HPGQRGETGFQGKT--------GPPGPGGVVGPQ 933
Query: 60 GAAKSTSRVHCRAAEGGGLRPVPAVPLPGPAGRS---GGPGAWSAQKHGGHLSGRAGGTG 116
G T + R G P LPG AG+ G PG +SG+ G G
Sbjct: 934 GPTGETGPIGERGHPGPP-GPPGEQGLPGAAGKEGAKGDPGPQG-------ISGKDGPAG 985
Query: 117 -RKTEGLARAPGGAPGHGLQGGQ 138
R G PG GL+GG+
Sbjct: 986 LRGFPGERGLPGAQGAPGLKGGE 1008
Score = 27.3 bits (59), Expect = 8.4
Identities = 24/85 (28%), Positives = 32/85 (37%), Gaps = 2/85 (2%)
Query: 55 GKAPPGAAKSTSRVHCRAAEGGGLRPVPAVPLPGPAGRSGGPGAWSAQKHGGHLSGRAGG 114
G+ P +S + + G P PGP G+ G G A G + G G
Sbjct: 499 GRPGPVGGPGSSGAKGESGDPGPQGPRGVQGPPGPTGKPGKRGRPGAD-GGRGMPGEPGA 557
Query: 115 TG-RKTEGLARAPGGAPGHGLQGGQ 138
G R +GL PG G +G Q
Sbjct: 558 KGDRGFDGLPGLPGDKGHRGERGPQ 582
Score = 27.3 bits (59), Expect = 8.4
Identities = 30/92 (32%), Positives = 33/92 (35%), Gaps = 15/92 (16%)
Query: 51 PRPPGKA----PPGAAKSTSRVHCRAAEGGGLRPVPAVPLPGPAGRSGGPGAWSAQKHGG 106
P PG A PPG + G P P LPGP G G PG Q G
Sbjct: 624 PGQPGMAGVDGPPGPKGNMGPQGEPGPPGQQGNPGPQ-GLPGPQGPIGPPGEKGPQGKPG 682
Query: 107 HLSGRAGGTGRKTEGLARAPGGAPGHGLQGGQ 138
L+G G G P G PG Q G+
Sbjct: 683 -LAGLPGADG---------PPGHPGKEGQSGE 704
>gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Homo
sapiens]
Length = 1806
Score = 44.3 bits (103), Expect = 7e-05
Identities = 42/130 (32%), Positives = 52/130 (40%), Gaps = 19/130 (14%)
Query: 19 GPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGKAPPGAAKSTSRVHCRAAEGGGL 78
GPP G P E + G A + L RP + PPG A + +G
Sbjct: 1051 GPPGPVGSPGERGSAGTAGPI--------GLPGRPGPQGPPGPAGEKGAPGEKGPQGPAG 1102
Query: 79 RPVPAVP--LPGPAGRSGGPGAWSAQKHGGHLSGRAGGTGRKTE-------GLARAPGGA 129
R P LPGPAG +G PG + G G+ G G K E GL + P GA
Sbjct: 1103 RDGVQGPVGLPGPAGPAGSPGEDGDKGEIGE-PGQKGSKGDKGENGPPGPPGL-QGPVGA 1160
Query: 130 PGHGLQGGQP 139
PG G+P
Sbjct: 1161 PGIAGGDGEP 1170
Score = 43.5 bits (101), Expect = 1e-04
Identities = 43/131 (32%), Positives = 52/131 (39%), Gaps = 23/131 (17%)
Query: 17 AAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGKAPPGAAKSTSRVHCRAAEGG 76
AAGPP G P + G + P PPG+ PG A + +G
Sbjct: 1289 AAGPPGAKGPPGDDGPKGNPGPVGFPGD------PGPPGE--PGPAGQDGVGGDKGEDGD 1340
Query: 77 GLRPVPAVPL-----PGPAGRSGGPGAWSAQKHGGHLSGRAGGTGRKTEGLARAPGGAPG 131
+P P P PGP G+ G PGA A+ GR G G K E A P G G
Sbjct: 1341 PGQPGPPGPSGEAGPPGPPGKRGPPGAAGAE-------GRQGEKGAKGEAGAEGPPGKTG 1393
Query: 132 H-GLQG--GQP 139
G QG G+P
Sbjct: 1394 PVGPQGPAGKP 1404
Score = 40.0 bits (92), Expect = 0.001
Identities = 40/133 (30%), Positives = 43/133 (32%), Gaps = 18/133 (13%)
Query: 12 PASWSAAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGK-------APPGAAKS 64
P G P AG E G K E A P PPG PPG
Sbjct: 1152 PGLQGPVGAPGIAGGDGEPGPRGQQGMFGQKGDEGARGFPGPPGPIGLQGLPGPPG---- 1207
Query: 65 TSRVHCRAAEGGGLRPVPAVPLPGPAGRSGGPGAWSAQKHGGHLSGRAGGTGRKTEGLAR 124
E G + P+ PGP G G GA Q G + G GG G K E
Sbjct: 1208 ------EKGENGDVGPMGPPGPPGPRGPQGPNGADGPQGPPGSV-GSVGGVGEKGEPGEA 1260
Query: 125 APGGAPGHGLQGG 137
G PG GG
Sbjct: 1261 GNPGPPGEAGVGG 1273
Score = 37.7 bits (86), Expect = 0.006
Identities = 44/138 (31%), Positives = 48/138 (34%), Gaps = 16/138 (11%)
Query: 12 PASWSAAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGK----APPGAAKSTSR 67
P AGPP G+ A G K + + PPGK P G A
Sbjct: 1347 PGPSGEAGPPGPPGKRGPPGAAGAEGRQGEKGAKGEAGAEGPPGKTGPVGPQGPAGKPGP 1406
Query: 68 VHCRAAEGGGLRPVPAVPLPGPAGRSGGPGAWSAQKHGGHLSGRAGGTGRKTE----GLA 123
R G PV LPG AG+ G PG G L G G G K GL
Sbjct: 1407 EGLRGIPG----PVGEQGLPGAAGQDGPPGPMGPPGLPG-LKGDPGSKGEKGHPGLIGLI 1461
Query: 124 RAPG--GAPG-HGLQGGQ 138
PG G G GL G Q
Sbjct: 1462 GPPGEQGEKGDRGLPGTQ 1479
Score = 32.7 bits (73), Expect = 0.20
Identities = 34/128 (26%), Positives = 40/128 (31%), Gaps = 4/128 (3%)
Query: 12 PASWSAAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGKAPPGAAKSTSRVHCR 71
P GP G + G + K + P PPG+A G K
Sbjct: 1224 PGPRGPQGPNGADGPQGPPGSVGSVGGVGEKGEPGEAGNPGPPGEAGVGGPKGERGEKGE 1283
Query: 72 AAEGGGLRPVPAVPLPGPAGRSGGPGAWSAQKHGGHLSGRAGGTGRKTEGLARAPGGAPG 131
A G P A PG G G PG G G G G+ G + G PG
Sbjct: 1284 AGPPGAAGPPGAKGPPGDDGPKGNPGPVGFPGDPGP-PGEPGPAGQDGVGGDKGEDGDPG 1342
Query: 132 HGLQGGQP 139
Q G P
Sbjct: 1343 ---QPGPP 1347
Score = 31.6 bits (70), Expect = 0.44
Identities = 22/56 (39%), Positives = 26/56 (46%), Gaps = 6/56 (10%)
Query: 87 PGPAGRSGGPGAWSAQKHGGHLS--GRAGGTGRKTEGLARAPG--GAPGHGLQGGQ 138
PGP G+ G PG G + G G G+ GLA PG G PGH + GQ
Sbjct: 687 PGPPGQQGNPGPQGLPGPQGPIGPPGEKGPQGK--PGLAGLPGADGPPGHPGKEGQ 740
Score = 30.4 bits (67), Expect = 0.99
Identities = 35/128 (27%), Positives = 40/128 (31%), Gaps = 25/128 (19%)
Query: 4 GVRSLVSTPASWSAAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGKAPPGAAK 63
G R + P GP G TG + S PPG PPG
Sbjct: 868 GARGVAGKPGPRGQRGPTGPRGSRGARGPTGKPGP------KGTSGGDGPPG--PPG--- 916
Query: 64 STSRVHCRAAEGGGLRPVPAVPLPGPAGRSGGPGAWSAQKHGGHLSGRAGGTGRKTEGLA 123
E G P V PGP G G PG H G+ G TG + +
Sbjct: 917 ----------ERGPQGPQGPVGFPGPKGPPGPPGKDGLPGH----PGQRGETGFQGKTGP 962
Query: 124 RAPGGAPG 131
PGG G
Sbjct: 963 PGPGGVVG 970
Score = 29.6 bits (65), Expect = 1.7
Identities = 34/123 (27%), Positives = 41/123 (33%), Gaps = 10/123 (8%)
Query: 12 PASWSAAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGK-APPGAAKSTSRVHC 70
P + GPP G P G S K L PPG+ G
Sbjct: 1422 PGAAGQDGPPGPMGPPGLPGLKGDPGSKGEKGHPGLIGLIGPPGEQGEKGDRGLPGTQGS 1481
Query: 71 RAAEGGGLRPVPAVPLPGPAGRSGGPGAWSAQKHGGHL--SGRAGGTGRKTEGLARAPGG 128
A+G G +PGPAG G PG G G G G+K + P G
Sbjct: 1482 PGAKGDG-------GIPGPAGPLGPPGPPGLPGPQGPKGNKGSTGPAGQKGDSGLPGPPG 1534
Query: 129 APG 131
+PG
Sbjct: 1535 SPG 1537
Score = 28.9 bits (63), Expect = 2.9
Identities = 32/138 (23%), Positives = 43/138 (31%), Gaps = 7/138 (5%)
Query: 4 GVRSLVSTPASWSAAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGKAPPGAAK 63
G++ P GPP G P G ++ + + P + A
Sbjct: 457 GLQGPTGPPGDPGDRGPPGRPGLPGADGLPGPPGTMLMLPFRYGGDGSKGPTISAQEAQA 516
Query: 64 STSRVHCRAAEGGGLRPVPAVPLPGPAGRSGGPGAWSAQKHGG-----HLSGRAGGTGRK 118
R A G P+ PGP G G GA G + G G TG+
Sbjct: 517 QAILQQARIALRGPPGPMGLTGRPGPVGGPGSSGAKGESGDPGPQGPRGVQGPPGPTGK- 575
Query: 119 TEGLARAPGGAPGHGLQG 136
G PG G G+ G
Sbjct: 576 -PGKRGRPGADGGRGMPG 592
Score = 28.5 bits (62), Expect = 3.7
Identities = 40/143 (27%), Positives = 48/143 (33%), Gaps = 25/143 (17%)
Query: 4 GVRSLVSTPASWSAAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGKA----PP 59
G + V P GPP G P H G + K PPG P
Sbjct: 922 GPQGPVGFPGPKGPPGPPGKDGLPG-HPGQRGETGFQGKT--------GPPGPGGVVGPQ 972
Query: 60 GAAKSTSRVHCRAAEGGGLRPVPAVPLPGPAGRS---GGPGAWSAQKHGGHLSGRAGGTG 116
G T + R G P LPG AG+ G PG +SG+ G G
Sbjct: 973 GPTGETGPIGERGHPGPP-GPPGEQGLPGAAGKEGAKGDPGPQG-------ISGKDGPAG 1024
Query: 117 -RKTEGLARAPGGAPGHGLQGGQ 138
R G PG GL+GG+
Sbjct: 1025 LRGFPGERGLPGAQGAPGLKGGE 1047
Score = 27.3 bits (59), Expect = 8.4
Identities = 24/85 (28%), Positives = 32/85 (37%), Gaps = 2/85 (2%)
Query: 55 GKAPPGAAKSTSRVHCRAAEGGGLRPVPAVPLPGPAGRSGGPGAWSAQKHGGHLSGRAGG 114
G+ P +S + + G P PGP G+ G G A G + G G
Sbjct: 538 GRPGPVGGPGSSGAKGESGDPGPQGPRGVQGPPGPTGKPGKRGRPGAD-GGRGMPGEPGA 596
Query: 115 TG-RKTEGLARAPGGAPGHGLQGGQ 138
G R +GL PG G +G Q
Sbjct: 597 KGDRGFDGLPGLPGDKGHRGERGPQ 621
Score = 27.3 bits (59), Expect = 8.4
Identities = 30/92 (32%), Positives = 33/92 (35%), Gaps = 15/92 (16%)
Query: 51 PRPPGKA----PPGAAKSTSRVHCRAAEGGGLRPVPAVPLPGPAGRSGGPGAWSAQKHGG 106
P PG A PPG + G P P LPGP G G PG Q G
Sbjct: 663 PGQPGMAGVDGPPGPKGNMGPQGEPGPPGQQGNPGPQ-GLPGPQGPIGPPGEKGPQGKPG 721
Query: 107 HLSGRAGGTGRKTEGLARAPGGAPGHGLQGGQ 138
L+G G G P G PG Q G+
Sbjct: 722 -LAGLPGADG---------PPGHPGKEGQSGE 743
>gi|48762934 alpha 2 type I collagen [Homo sapiens]
Length = 1366
Score = 44.3 bits (103), Expect = 7e-05
Identities = 38/121 (31%), Positives = 45/121 (37%), Gaps = 18/121 (14%)
Query: 19 GPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGKAPPGAAKSTSRVHCRAAEGGGL 78
GPP GR E TG P PPG PPG + + + G G
Sbjct: 45 GPPGPPGRDGEDGPTGPPGP------------PGPPG--PPGLGGNFAAQYDGKGVGLGP 90
Query: 79 RPVPAVPLPGPAGRSGGPGAWSAQKHGGHLSGRAGGTGRKTEGLARAPGGAPGHGLQGGQ 138
P+ + GP G +G PG Q G G G TG AR P G PG + G
Sbjct: 91 GPMGLMGPRGPPGAAGAPGPQGFQGPAGE-PGEPGQTG---PAGARGPAGPPGKAGEDGH 146
Query: 139 P 139
P
Sbjct: 147 P 147
Score = 42.0 bits (97), Expect = 3e-04
Identities = 46/160 (28%), Positives = 56/160 (35%), Gaps = 27/160 (16%)
Query: 4 GVRSLVSTPASWSAAGPPDGAGRPAEHEATG-----------GASSLHIKCMEAASLLPR 52
G+R + P A G P G P ATG G + E + P
Sbjct: 661 GLRGEIGNPGRDGARGAPGAVGAPGPAGATGDRGEAGAAGPAGPAGPRGSPGERGEVGPA 720
Query: 53 PPG--KAPPGAAKSTSRVHCRAAEG-----GGLRPVPAVPLPGPAGRSGGPGAWSAQKHG 105
P P GAA R A+G G + P V GPAG +G PG ++ G
Sbjct: 721 GPNGFAGPAGAAGQPGAKGERGAKGPKGENGVVGPTGPVGAAGPAGPNGPPGPAGSRGDG 780
Query: 106 G-----HLSGRAGGTGRKTEGLARAPGGAPG----HGLQG 136
G G AG TG P G PG GL+G
Sbjct: 781 GPPGMTGFPGAAGRTGPPGPSGISGPPGPPGPAGKEGLRG 820
Score = 41.6 bits (96), Expect = 4e-04
Identities = 42/147 (28%), Positives = 56/147 (38%), Gaps = 27/147 (18%)
Query: 4 GVRSLVSTPASWSAAGP-----PDG-AGRPAEHEATGGASSLHIKCMEAASLLPRPPGKA 57
G ++ P S A+GP P+G AGRP E G LP PG
Sbjct: 412 GRAGVMGPPGSRGASGPAGVRGPNGDAGRPGEPGLMGPRG------------LPGSPGNI 459
Query: 58 PPGAAKSTSRVHCRAAEGGGLRPVPA------VPLPGPAGRSGGPGAWSAQKHGGHLSGR 111
P + + G + P A + PGP G +G PG + H G L+G
Sbjct: 460 GPAGKEGPVGLPGIDGRPGPIGPAGARGEPGNIGFPGPKGPTGDPGKNGDKGHAG-LAGA 518
Query: 112 AGGTGRKTEGLARAPGGAPGHGLQGGQ 138
G G A+ P G G+QGG+
Sbjct: 519 RGAPGPDGNNGAQGPPGP--QGVQGGK 543
Score = 38.9 bits (89), Expect = 0.003
Identities = 41/129 (31%), Positives = 50/129 (38%), Gaps = 12/129 (9%)
Query: 4 GVRSLVSTPASWSAAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPG-KAPPGAA 62
G R V P +GP G P + TG + + + A LP P G P GAA
Sbjct: 280 GPRGEVGLPG---LSGPVGPPGNPGANGLTGAKGAAGLPGVAGAPGLPGPRGIPGPVGAA 336
Query: 63 KSTSRVHCRAAEGGGLRPVPAVPLPGPAGRSGGPGAWSAQKHGGHLSGRAGGTGRKTEGL 122
+T A G P PA G +G G PG+ Q G SG G G E
Sbjct: 337 GAT------GARGLVGEPGPA-GSKGESGNKGEPGSAGPQGPPGP-SGEEGKRGPNGEAG 388
Query: 123 ARAPGGAPG 131
+ P G PG
Sbjct: 389 SAGPPGPPG 397
Score = 38.5 bits (88), Expect = 0.004
Identities = 42/136 (30%), Positives = 48/136 (35%), Gaps = 22/136 (16%)
Query: 19 GPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPG----KAPPG---AAKSTSRVHCR 71
GPP G P G + + LP P G + PPG AA T + R
Sbjct: 550 GPPGFQGLPGPSGPAGEVGKPGERGLHGEFGLPGPAGPRGERGPPGESGAAGPTGPIGSR 609
Query: 72 AAEG--------GGLRPVPAVPLPGPAGRSGGPGAWSAQKHGGHLSGRAGGTGRKTEGLA 123
G G V AV GP+G SG PG A +G GG G K E
Sbjct: 610 GPSGPPGPDGNKGEPGVVGAVGTAGPSGPSGLPGERGA-------AGIPGGKGEKGEPGL 662
Query: 124 RAPGGAPGHGLQGGQP 139
R G PG G P
Sbjct: 663 RGEIGNPGRDGARGAP 678
Score = 36.2 bits (82), Expect = 0.018
Identities = 43/141 (30%), Positives = 49/141 (34%), Gaps = 20/141 (14%)
Query: 4 GVRSLVSTPASWSAAGPPDGAGRPAEHEATG--GASSLHIKCMEAASLLPRPPGKAPPGA 61
GV V P AGPP G P + G GA A P PPG
Sbjct: 886 GVAGAVGEPGPLGIAGPPGARGPPGAVGSPGVNGAPG-------EAGRDGNPGNDGPPGR 938
Query: 62 AKSTSRVHCRAAEGGGLRPVPAVPLPGPAGRSGGPGAWSAQKHGGHLSGRAGGTGRKTEG 121
R G + PV A PGP G G G KHG G G +G
Sbjct: 939 DGQPGHKGERGYP-GNIGPVGAAGAPGPHGPVGPAG-----KHGNR--GETGPSGPVGPA 990
Query: 122 LARAPGGAPG-HGLQG--GQP 139
A P G G G++G G+P
Sbjct: 991 GAVGPRGPSGPQGIRGDKGEP 1011
Score = 35.4 bits (80), Expect = 0.031
Identities = 41/132 (31%), Positives = 50/132 (37%), Gaps = 12/132 (9%)
Query: 17 AAGPPDGAGRPA---EHEATGGASSLHIKCMEAASLLPRPPGKA-PPGAAKSTSRVHCRA 72
+AGPP G P E A G A LP G PPG + +
Sbjct: 251 SAGPPGFPGAPGPKGEIGAVGNAGPAGPAGPRGEVGLPGLSGPVGPPGNPGANGLTGAKG 310
Query: 73 AEGGGLRPVPAVP-LPGPAGRSGGPGAWSAQKHGGHL-----SGRAGGTGRKTEGLARAP 126
A GL V P LPGP G G GA A G + +G G +G K E + P
Sbjct: 311 A--AGLPGVAGAPGLPGPRGIPGPVGAAGATGARGLVGEPGPAGSKGESGNKGEPGSAGP 368
Query: 127 GGAPGHGLQGGQ 138
G PG + G+
Sbjct: 369 QGPPGPSGEEGK 380
Score = 34.3 bits (77), Expect = 0.068
Identities = 38/136 (27%), Positives = 45/136 (33%), Gaps = 31/136 (22%)
Query: 19 GPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGKAPPGAAKSTSRVHCRAAEGGGL 78
GPP AG P G A P PG+ P A+ + +A E G
Sbjct: 100 GPPGAAGAPGPQGFQGPAGE------------PGEPGQTGPAGARGPAGPPGKAGEDGH- 146
Query: 79 RPVPAVP-------LPGPAGRSGGPGA------WSAQKHGG--HLSGRAGGTGRKTEGLA 123
P P + GP G G PG + H G L G+ G G K E A
Sbjct: 147 ---PGKPGRPGERGVVGPQGARGFPGTPGLPGFKGIRGHNGLDGLKGQPGAPGVKGEPGA 203
Query: 124 RAPGGAPGHGLQGGQP 139
G PG G P
Sbjct: 204 PGENGTPGQTGARGLP 219
Score = 32.7 bits (73), Expect = 0.20
Identities = 41/129 (31%), Positives = 51/129 (39%), Gaps = 14/129 (10%)
Query: 19 GPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPG----KAPPGAAKSTSRVHCRAAE 74
GPP AG+ G + + E ++ PPG K P G A + +
Sbjct: 808 GPPGPAGKEGLRGPRGDQGPVG-RTGEVGAV--GPPGFAGEKGPSGEAGTAGPPGTPGPQ 864
Query: 75 GGGLRPVPAV-PLPGPAGRSGGPGAWSAQKHGGHLSGRAGGTG-RKTEGLARAPG--GAP 130
G L P + LPG G G PG A G L G AG G R G +PG GAP
Sbjct: 865 G--LLGAPGILGLPGSRGERGLPGVAGAVGEPGPL-GIAGPPGARGPPGAVGSPGVNGAP 921
Query: 131 GHGLQGGQP 139
G + G P
Sbjct: 922 GEAGRDGNP 930
Score = 30.8 bits (68), Expect = 0.76
Identities = 42/146 (28%), Positives = 45/146 (30%), Gaps = 31/146 (21%)
Query: 4 GVRSLVSTPASWSAAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPG-------- 55
G R P G P GRP E G + A P PG
Sbjct: 130 GARGPAGPPGKAGEDGHPGKPGRPGERGVVGP---------QGARGFPGTPGLPGFKGIR 180
Query: 56 --------KAPPGAAKSTSRVHCRAAEGGGLRPVPAVPLPGPAGRSGGPGAWSAQKHGGH 107
K PGA E G A LPG GR G PG A+ G
Sbjct: 181 GHNGLDGLKGQPGAPGVKGEPGA-PGENGTPGQTGARGLPGERGRVGAPGPAGARGSDGS 239
Query: 108 LSGRAGGTGRKTEGLARAPG--GAPG 131
+ G G G G A PG GAPG
Sbjct: 240 V-GPVGPAG--PIGSAGPPGFPGAPG 262
>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
Length = 1464
Score = 43.1 bits (100), Expect = 1e-04
Identities = 45/145 (31%), Positives = 55/145 (37%), Gaps = 16/145 (11%)
Query: 4 GVRSLVSTPASWSAAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGKA-PPGAA 62
G R P AGPP G+P G A + + + P P G A PPG
Sbjct: 800 GDRGEPGPPGPAGFAGPPGADGQPGAKGEPGDAGA------KGDAGPPGPAGPAGPPGPI 853
Query: 63 KSTSRVHCRAAEGGGLRPVPAVPLPGPAGRSGGPGAWSAQKHGG--HLSGRAGGTGRKTE 120
+ + A G P A PG AGR G PG G +G+ GG G + E
Sbjct: 854 GNVGAPGAKGARGSA-GPPGATGFPGAAGRVGPPGPSGNAGPPGPPGPAGKEGGKGPRGE 912
Query: 121 -GLARAPG-----GAPGHGLQGGQP 139
G A PG G PG + G P
Sbjct: 913 TGPAGRPGEVGPPGPPGPAGEKGSP 937
Score = 42.4 bits (98), Expect = 3e-04
Identities = 39/136 (28%), Positives = 53/136 (38%), Gaps = 9/136 (6%)
Query: 4 GVRSLVSTPASWSAAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPG-KAPPGAA 62
G+ P + +GP G P +G + K A P P G + PPG A
Sbjct: 404 GIAGAPGFPGARGPSGPQGPGGPPGPKGNSGEPGAPGSKGDTGAKGEPGPVGVQGPPGPA 463
Query: 63 KSTSRVHCRAAEGGGLRPVPAVPLPGPAGRSGGPGAWSAQKHGGHLSGRAGGTGRKTEGL 122
+ R A G P P LPGP G GGPG+ G ++G G G +
Sbjct: 464 GEEGK---RGARG---EPGPT-GLPGPPGERGGPGSRGFPGADG-VAGPKGPAGERGSPG 515
Query: 123 ARAPGGAPGHGLQGGQ 138
P G+PG + G+
Sbjct: 516 PAGPKGSPGEAGRPGE 531
Score = 42.4 bits (98), Expect = 3e-04
Identities = 45/138 (32%), Positives = 52/138 (37%), Gaps = 18/138 (13%)
Query: 19 GPPDGAGRPA---EHEATGGASSLHIKCMEAASLLPRPPGKA----PPGA---AKSTSRV 68
GPP AG P E +G A + P PPG A PPGA +
Sbjct: 770 GPPGPAGAPGDKGESGPSGPAGPTGARGAPGDRGEPGPPGPAGFAGPPGADGQPGAKGEP 829
Query: 69 HCRAAEGGGLRPVPAVPL--PGPAGRSGGPGAWSAQKHGG-----HLSGRAGGTGRKTEG 121
A+G P PA P PGP G G PGA A+ G G AG G
Sbjct: 830 GDAGAKGDAGPPGPAGPAGPPGPIGNVGAPGAKGARGSAGPPGATGFPGAAGRVGPPGPS 889
Query: 122 LARAPGGAPG-HGLQGGQ 138
P G PG G +GG+
Sbjct: 890 GNAGPPGPPGPAGKEGGK 907
Score = 40.8 bits (94), Expect = 7e-04
Identities = 43/142 (30%), Positives = 53/142 (37%), Gaps = 17/142 (11%)
Query: 12 PASWSAAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGKAPP-------GAAKS 64
P G P GRP A G A + A+ P P G A P GA
Sbjct: 298 PGQMGPRGLPGERGRPG---APGPAGARGNDGATGAAGPPGPTGPAGPPGFPGAVGAKGE 354
Query: 65 TSRVHCRAAEGG-GLRPVPAVPLP----GPAGRSGGPGAWSAQKHGGH--LSGRAGGTGR 117
R +EG G+R P P P GPAG G G A+ G ++G G G
Sbjct: 355 AGPQGPRGSEGPQGVRGEPGPPGPAGAAGPAGNPGADGQPGAKGANGAPGIAGAPGFPGA 414
Query: 118 KTEGLARAPGGAPGHGLQGGQP 139
+ + PGG PG G+P
Sbjct: 415 RGPSGPQGPGGPPGPKGNSGEP 436
Score = 39.3 bits (90), Expect = 0.002
Identities = 45/151 (29%), Positives = 51/151 (33%), Gaps = 25/151 (16%)
Query: 4 GVRSLVSTPASWSAAGPPD---GAGRPAEHEATGGASSLHIKCMEAASLLPRPPGKA--- 57
G + P AGPP G P A G A A+ PPG +
Sbjct: 833 GAKGDAGPPGPAGPAGPPGPIGNVGAPGAKGARGSAGPPGATGFPGAAGRVGPPGPSGNA 892
Query: 58 ----PPGAAKSTSRVHCRAAEGGGLRPVPAVPL--PGPAGRSGGPGAWSAQKHGGHLSGR 111
PPG A R G RP P PGPAG G PGA G
Sbjct: 893 GPPGPPGPAGKEGGKGPRGETGPAGRPGEVGPPGPPGPAGEKGSPGA----------DGP 942
Query: 112 AGGTGRK-TEGLARAPG--GAPGHGLQGGQP 139
AG G +G+A G G PG + G P
Sbjct: 943 AGAPGTPGPQGIAGQRGVVGLPGQRGERGFP 973
Score = 37.0 bits (84), Expect = 0.011
Identities = 31/123 (25%), Positives = 39/123 (31%), Gaps = 7/123 (5%)
Query: 17 AAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGKAPPGAAKSTSRVHCRAAEGG 76
A GP G P G + + P PG + + S G
Sbjct: 939 ADGPAGAPGTPGPQGIAGQRGVVGLPGQRGERGFPGLPGPSGEPGKQGPSGASGERGPPG 998
Query: 77 GLRPVPAVPLPGPAGRSGGPGAWSAQKHGGHLSGRAGGTGRKTEGLARAPGGAPGHGLQG 136
+ P PG +GR G PGA + GR G G K + P G PG
Sbjct: 999 PMGPPGLAGPPGESGREGAPGAEGS-------PGRDGSPGAKGDRGETGPAGPPGAPGAP 1051
Query: 137 GQP 139
G P
Sbjct: 1052 GAP 1054
Score = 36.2 bits (82), Expect = 0.018
Identities = 41/139 (29%), Positives = 45/139 (32%), Gaps = 9/139 (6%)
Query: 4 GVRSLVSTPASWSAAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPG-KAPPGAA 62
G R P GPP G P G K P P G K PG A
Sbjct: 467 GKRGARGEPGPTGLPGPPGERGGPGSRGFPGADGVAGPKGPAGERGSPGPAGPKGSPGEA 526
Query: 63 KSTSRVHCRAAEG-----GGLRPVPAVPLPGPAGRSGGPGAWSAQKHGGHLSGRAGGTGR 117
A+G G P PGPAG+ G PG G +G G G
Sbjct: 527 GRPGEAGLPGAKGLTGSPGSPGPDGKTGPPGPAGQDGRPGPPGPPGARGQ-AGVMGFPGP 585
Query: 118 KTEGLARAPGGAPGHGLQG 136
K G A PG A G+ G
Sbjct: 586 K--GAAGEPGKAGERGVPG 602
Score = 35.4 bits (80), Expect = 0.031
Identities = 42/145 (28%), Positives = 49/145 (33%), Gaps = 29/145 (20%)
Query: 11 TPASWSAAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGKA----------PPG 60
+P G P AGRP E G PPG A PPG
Sbjct: 513 SPGPAGPKGSPGEAGRPGEAGLPGAKGLTGSPGSPGPDGKTGPPGPAGQDGRPGPPGPPG 572
Query: 61 AAKSTSRVHCRAAEGG-------GLRPVPAVP-LPGPAGRSGGPGAWSAQKHGGHLSGRA 112
A + +G G R VP P GPAG+ G GA G A
Sbjct: 573 ARGQAGVMGFPGPKGAAGEPGKAGERGVPGPPGAVGPAGKDGEAGAQGP-------PGPA 625
Query: 113 GGTGRKTEGLARAPGGAPG-HGLQG 136
G G + E + P G+PG GL G
Sbjct: 626 GPAGERGE---QGPAGSPGFQGLPG 647
Score = 34.7 bits (78), Expect = 0.052
Identities = 41/145 (28%), Positives = 46/145 (31%), Gaps = 24/145 (16%)
Query: 2 HGGVRSLVSTPASWSAAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPR--PPGKAPP 59
H G L AGP G P E+ A G + PR P + P
Sbjct: 267 HRGFSGLDGAKGDAGPAGPKGEPGSPGENGAPG-------------QMGPRGLPGERGRP 313
Query: 60 GAAKSTSRVHCRAAEGGGLRPVPAVPLPGPAGRSGGPGAWSAQKHGGHLSGRAGGTGRKT 119
GA A G P P GPAG G PGA A+ G R +
Sbjct: 314 GAPGPAGARGNDGATGAAGPPGPT----GPAGPPGFPGAVGAKGEAGPQGPRGSEGPQGV 369
Query: 120 EGLARAPGGAPGHGLQG-----GQP 139
G PG A G G GQP
Sbjct: 370 RGEPGPPGPAGAAGPAGNPGADGQP 394
Score = 33.9 bits (76), Expect = 0.089
Identities = 42/137 (30%), Positives = 47/137 (34%), Gaps = 24/137 (17%)
Query: 4 GVRSLVSTPASWSAAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPR-PPGKAPPGAA 62
G R L P A GP G P E G + + PR PPG PPG
Sbjct: 185 GPRGLPGPPG---APGPQGFQGPPGEPGEPGASGPMG----------PRGPPG--PPGKN 229
Query: 63 KSTSRVHCRAAEGGGLRPVPAVPLPGPAGRSGGPGAWSAQKHGGHLSGRAGGTGRKTEGL 122
G RP P PGP G G PG GH G +G G K +
Sbjct: 230 GDDGEA------GKPGRPGERGP-PGPQGARGLPGTAGLPGMKGH-RGFSGLDGAKGDAG 281
Query: 123 ARAPGGAPGHGLQGGQP 139
P G PG + G P
Sbjct: 282 PAGPKGEPGSPGENGAP 298
Score = 33.1 bits (74), Expect = 0.15
Identities = 40/146 (27%), Positives = 50/146 (34%), Gaps = 35/146 (23%)
Query: 18 AGPPDGAGRPAEH------EATGGASSLHIKCMEAASLLPRPPGKAPPGAAKSTSRVHCR 71
AGPP AG+P E A G + + + + PPG A P A
Sbjct: 649 AGPPGEAGKPGEQGVPGDLGAPGPSGARGERGFPGERGVQGPPGPAGPRGANGAPGNDGA 708
Query: 72 AAEGG-----------GLRPVP----AVPLPGPAGRSGGPGAWSAQKHGGH-----LSGR 111
+ G GL+ +P A LPGP G G G A G L+G
Sbjct: 709 KGDAGAPGAPGSQGAPGLQGMPGERGAAGLPGPKGDRGDAGPKGADGSPGKDGVRGLTGP 768
Query: 112 AGGTGRKTEGLARAPGGAPGHGLQGG 137
G G P GAPG + G
Sbjct: 769 IGPPG---------PAGAPGDKGESG 785
Score = 33.1 bits (74), Expect = 0.15
Identities = 40/140 (28%), Positives = 45/140 (32%), Gaps = 33/140 (23%)
Query: 4 GVRSLVSTPASWSAAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGK----APP 59
G + P + + G P G P E A G LP P G P
Sbjct: 707 GAKGDAGAPGAPGSQGAPGLQGMPGERGAAG---------------LPGPKGDRGDAGPK 751
Query: 60 GAAKSTSRVHCRAAEGGGLRPVPAVPLPGPAGRSGGPGAWSAQKHGGHLSGRAGGTGRKT 119
GA S + R G P P PGPAG G G SG AG TG +
Sbjct: 752 GADGSPGKDGVRGLTG------PIGP-PGPAGAPGDKGESGP-------SGPAGPTGARG 797
Query: 120 EGLARAPGGAPGHGLQGGQP 139
R G PG G P
Sbjct: 798 APGDRGEPGPPGPAGFAGPP 817
Score = 32.7 bits (73), Expect = 0.20
Identities = 48/164 (29%), Positives = 55/164 (33%), Gaps = 41/164 (25%)
Query: 4 GVRSLVSTPASWSA---AGPPDGAG---RPAEHEATGGASSLHIKCMEAASLLPRPPGKA 57
G + L +P S GPP AG RP G + PGKA
Sbjct: 536 GAKGLTGSPGSPGPDGKTGPPGPAGQDGRPGPPGPPGARGQAGVMGFPGPKGAAGEPGKA 595
Query: 58 -------PPGAAKSTSRVHCRAAEGGGLRPVPAVP-----------------LPGPAGRS 93
PPGA + A+G P PA P LPGPAG
Sbjct: 596 GERGVPGPPGAVGPAGKDGEAGAQGP---PGPAGPAGERGEQGPAGSPGFQGLPGPAGPP 652
Query: 94 GGPGAWSAQKHGGHLSGRAGGTGRKTEGLARAPGGAPG-HGLQG 136
G G Q G L G G +G AR G PG G+QG
Sbjct: 653 GEAGKPGEQGVPGDL-GAPGPSG------ARGERGFPGERGVQG 689
Score = 28.5 bits (62), Expect = 3.7
Identities = 36/137 (26%), Positives = 47/137 (34%), Gaps = 42/137 (30%)
Query: 21 PDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGKAPPGAAKSTSRVHCRAAEGGGLRP 80
PDG+ P + E TG + P G P + A G
Sbjct: 96 PDGSESPTDQETTG---------------VEGPKGDTGPRGPRGP-------AGPPGRDG 133
Query: 81 VPAVP-LPGPAGRSGGPG--------------AWSAQKHGG-HLSGRAGGTGRKTEGLAR 124
+P P LPGP G G PG + + GG + G G +G + GL
Sbjct: 134 IPGQPGLPGPPGPPGPPGPPGLGGNFAPQLSYGYDEKSTGGISVPGPMGPSGPR--GLPG 191
Query: 125 APGGAPGHGLQG--GQP 139
PG G QG G+P
Sbjct: 192 PPGAPGPQGFQGPPGEP 208
Score = 28.5 bits (62), Expect = 3.7
Identities = 38/137 (27%), Positives = 43/137 (31%), Gaps = 11/137 (8%)
Query: 4 GVRSLVSTPASWSAAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGKAPP--GA 61
G L P G P G P + G P PG P A
Sbjct: 1001 GPPGLAGPPGESGREGAPGAEGSPGRDGSPGAKGDRGETGPAGPPGAPGAPGAPGPVGPA 1060
Query: 62 AKSTSRVHCR-AAEGGGLRPVPAVPLPGPAGRSGGPGAWSAQKHGGHLSGRAGGTGRKTE 120
KS R A G + PV A GP G G G Q G + G G +G
Sbjct: 1061 GKSGDRGETGPAGPAGPVGPVGARGPAGPQGPRGDKGETGEQGDRG-IKGHRGFSG---- 1115
Query: 121 GLARAPGGAPGH-GLQG 136
+ P G PG G QG
Sbjct: 1116 --LQGPPGPPGSPGEQG 1130
Score = 28.1 bits (61), Expect = 4.9
Identities = 31/102 (30%), Positives = 38/102 (37%), Gaps = 19/102 (18%)
Query: 2 HGGVRSLVSTPASWSAAGP--PDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGKAPP 59
H G L P + G P GA PA G++ K + + LP P G PP
Sbjct: 1110 HRGFSGLQGPPGPPGSPGEQGPSGASGPAGPRGPPGSAGAPGK--DGLNGLPGPIG--PP 1165
Query: 60 GAAKSTSRVHCRAAEGGGLRPVPAVPLPGPAGRSGGPGAWSA 101
G R + G + P PGP G G PG SA
Sbjct: 1166 GPRG-------RTGDAGPVGP------PGPPGPPGPPGPPSA 1194
>gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens]
Length = 1838
Score = 42.7 bits (99), Expect = 2e-04
Identities = 44/124 (35%), Positives = 49/124 (39%), Gaps = 20/124 (16%)
Query: 19 GPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGKAPPGAAKST-SRVHCRAAEGGG 77
GPP G P + G +L +K E PPG PPG A S R AA G
Sbjct: 1051 GPPGLRGFPGDRGLPGPVGALGLKGNEG------PPG--PPGPAGSPGERGPAGAAGPIG 1102
Query: 78 L--RPVPAVPLPGPAGRSGGPGAWSAQKHGGH--------LSGRAGGTGRKTEGLARAPG 127
+ RP P P PGPAG G PG Q G L G AG G E +
Sbjct: 1103 IPGRPGPQGP-PGPAGEKGAPGEKGPQGPAGRDGLQGPVGLPGPAGPVGPPGEDGDKGEI 1161
Query: 128 GAPG 131
G PG
Sbjct: 1162 GEPG 1165
Score = 41.2 bits (95), Expect = 6e-04
Identities = 40/123 (32%), Positives = 47/123 (38%), Gaps = 14/123 (11%)
Query: 19 GPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGKAPPGAAKSTSRVHCRAAEGGGL 78
GPP AG P E G A + I RP + PPG A + +G
Sbjct: 1081 GPPGPAGSPGERGPAGAAGPIGIP--------GRPGPQGPPGPAGEKGAPGEKGPQGPAG 1132
Query: 79 RP--VPAVPLPGPAGRSGGPGAWSAQKHGGHLSGRAGGTGRKTEGLARAPGGAPGHGLQG 136
R V LPGPAG G PG + G G+ G G K E + P G G
Sbjct: 1133 RDGLQGPVGLPGPAGPVGPPGEDGDKGEIGE-PGQKGSKGDKGE---QGPPGPTGPQGPI 1188
Query: 137 GQP 139
GQP
Sbjct: 1189 GQP 1191
Score = 38.1 bits (87), Expect = 0.005
Identities = 37/122 (30%), Positives = 39/122 (31%), Gaps = 18/122 (14%)
Query: 19 GPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGKA-------PPGAAKSTSRVHCR 71
G P +G E G K E P PPG PPG T V
Sbjct: 1189 GQPGPSGADGEPGPRGQQGLFGQKGDEGPRGFPGPPGPVGLQGLPGPPGEKGETGDVGQM 1248
Query: 72 AAEGGGLRPVPAVPLPGPAGRSGGPGAWSAQKHGGHLSGRAGGTGRKTEGLARAPGGAPG 131
G PGP G SG PGA Q G + G G G K E G PG
Sbjct: 1249 GPPGP----------PGPRGPSGAPGADGPQGPPGGI-GNPGAVGEKGEPGEAGEPGLPG 1297
Query: 132 HG 133
G
Sbjct: 1298 EG 1299
Score = 35.4 bits (80), Expect = 0.031
Identities = 47/159 (29%), Positives = 56/159 (35%), Gaps = 19/159 (11%)
Query: 12 PASWSAAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPG-------KAPPGAAKS 64
P S GPP G P G + K L PPG + PG S
Sbjct: 1452 PGSPGPDGPPGPMGPPGLPGLKGDSGPKGEKGHPGLIGLIGPPGEQGEKGDRGLPGPQGS 1511
Query: 65 TSRVHCRAAEGGGLRPVPAVPLPGPAGRSGGPGAWSAQKHGGHLSGRAGGTGRKTEGLAR 124
+ E G P + PGP G G PG A+ G +G TG K E
Sbjct: 1512 SGP----KGEQGITGPSGPIGPPGPPGLPGPPGPKGAK-------GSSGPTGPKGEAGHP 1560
Query: 125 APGGAPGHGLQGGQPHCCLQADSRRILLLAEQALRAGLG 163
P G PG + QP +QA R + A Q L G G
Sbjct: 1561 GPPGPPGPPGEVIQP-LPIQASRTRRNIDASQLLDDGNG 1598
Score = 33.5 bits (75), Expect = 0.12
Identities = 34/126 (26%), Positives = 44/126 (34%), Gaps = 9/126 (7%)
Query: 18 AGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGKAPPGAAKSTSRVHCRAAEGGG 77
+GPP G E G + L P G P + + + G
Sbjct: 651 SGPPGPPGDDGERGDDGEVGPRGLPGEPGPRGLLGPKGPPGPPGPPGVTGMDGQPGPKGN 710
Query: 78 LRPVPAVPLPGPAGRSGGPGAWSAQKHGGHLS--GRAGGTGRKTEGLARAPG--GAPGHG 133
+ P PGP G+ G PGA G + G G G+ GL PG G PGH
Sbjct: 711 VGPQGE---PGPPGQQGNPGAQGLPGPQGAIGPPGEKGPLGK--PGLPGMPGADGPPGHP 765
Query: 134 LQGGQP 139
+ G P
Sbjct: 766 GKEGPP 771
Score = 32.0 bits (71), Expect = 0.34
Identities = 43/152 (28%), Positives = 49/152 (32%), Gaps = 20/152 (13%)
Query: 4 GVRSLVSTPASWSAAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGK------- 56
G R P + GPP G G P G + P P G+
Sbjct: 1255 GPRGPSGAPGADGPQGPPGGIGNPGAVGEKGEPGEAGEPGLPGEGGPPGPKGERGEKGES 1314
Query: 57 APPGAAKSTSRVHCRAAEG--GGLRPV-----PAVP-LPGPAGRSGGPGAWSAQKHGGHL 108
P GAA +G G PV P P PGPAG+ G PG G
Sbjct: 1315 GPSGAAGPPGPKGPPGDDGPKGSPGPVGFPGDPGPPGEPGPAGQDGPPGDKGDDGEPGQ- 1373
Query: 109 SGRAGGTGRK----TEGLARAPGGAPGHGLQG 136
+G G TG G PG A G QG
Sbjct: 1374 TGSPGPTGEPGPSGPPGKRGPPGPAGPEGRQG 1405
Score = 31.6 bits (70), Expect = 0.44
Identities = 37/146 (25%), Positives = 47/146 (32%), Gaps = 23/146 (15%)
Query: 4 GVRSLVSTPASWSAAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGKA-PPGAA 62
G + P GPP AG G ++ LP P G PPG
Sbjct: 1096 GAAGPIGIPGRPGPQGPPGPAGEKGAPGEKGPQGPAGRDGLQGPVGLPGPAGPVGPPGED 1155
Query: 63 KSTSRVHCRAAEG-----------GGLRPVPAVPLPGPAGRSGGPGAWSAQKHGGHLSGR 111
+ +G G P + PGP+G G PG G+
Sbjct: 1156 GDKGEIGEPGQKGSKGDKGEQGPPGPTGPQGPIGQPGPSGADGEPGP----------RGQ 1205
Query: 112 AGGTGRKTEGLARAPGGAPGH-GLQG 136
G G+K + R G PG GLQG
Sbjct: 1206 QGLFGQKGDEGPRGFPGPPGPVGLQG 1231
Score = 30.0 bits (66), Expect = 1.3
Identities = 29/91 (31%), Positives = 32/91 (35%), Gaps = 19/91 (20%)
Query: 53 PPGK-APPGAAKSTSRVHCRAAEG-----------GGLRPVPAVPLPGPAGRSGGPGAWS 100
PPGK PPG A R + A+G G + P A PGP G G PG
Sbjct: 1388 PPGKRGPPGPAGPEGRQGEKGAKGEAGLEGPPGKTGPIGPQGAPGKPGPDGLRGIPGPVG 1447
Query: 101 AQKHGGHLSGRAGGTGRKTEGLARAPGGAPG 131
Q G G G P G PG
Sbjct: 1448 EQ-------GLPGSPGPDGPPGPMGPPGLPG 1471
Score = 28.1 bits (61), Expect = 4.9
Identities = 22/55 (40%), Positives = 25/55 (45%), Gaps = 4/55 (7%)
Query: 87 PGPAGRSGGPGAWSAQKHGGHLSGRAGGTG-RKTEGLARAPG--GAPGHGLQGGQ 138
PGP G SGG G G +G G TG +G PG G PGH Q G+
Sbjct: 930 PGPKGNSGGDGPAGPPGERGP-NGPQGPTGFPGPKGPPGPPGKDGLPGHPGQRGE 983
>gi|25777671 protein phosphatase 1, regulatory subunit 10 [Homo
sapiens]
Length = 940
Score = 41.6 bits (96), Expect = 4e-04
Identities = 37/125 (29%), Positives = 47/125 (37%), Gaps = 22/125 (17%)
Query: 16 SAAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGKAPPGAAKSTSRVHCRAAEG 75
S GPP+G G P GG P + P G ++S G
Sbjct: 730 SGGGPPNGRGGPGGGMVGGGG---------------HRPHEGPGGGMGNSSGHRPHEGPG 774
Query: 76 GGLRPVPAVPLPGPAGRSGGPGAWSAQKHGGHLSGRAGGTGRKTEGLARAPGGAPGHGLQ 135
GG+ P GP G GG G + H G G +GG+G + PGG G G
Sbjct: 775 GGMGSGHR-PHEGPGGSMGGGG--GHRPHEGPGGGISGGSGHRPH---EGPGGGMGAG-G 827
Query: 136 GGQPH 140
G +PH
Sbjct: 828 GHRPH 832
Score = 32.7 bits (73), Expect = 0.20
Identities = 23/70 (32%), Positives = 28/70 (40%), Gaps = 6/70 (8%)
Query: 71 RAAEGGGLRPVPAVPLPGPAGRSGGPGAWSAQKHGGHLSGRAGGTGRKTEGLARAPGGAP 130
R GG P P P G G G G + + GG G GG G + PGG
Sbjct: 707 RGGRGGNEPPPPPPPFRGARGGRSGGGPPNGR--GGPGGGMVGGGGHRPH---EGPGGGM 761
Query: 131 GHGLQGGQPH 140
G+ G +PH
Sbjct: 762 GNS-SGHRPH 770
>gi|110832843 TBP-associated factor 4 [Homo sapiens]
Length = 1085
Score = 41.6 bits (96), Expect = 4e-04
Identities = 42/129 (32%), Positives = 50/129 (38%), Gaps = 14/129 (10%)
Query: 7 SLVSTPASWSAAGPP-DGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGK--APPGAAK 63
+++ TP AA PP A P A ++ A + L RPPG PP AA
Sbjct: 236 TVIQTPPFVGAAAPPAPAAPSPPAAPAPAAPAAAPPPPPPAPATLARPPGHPAGPPTAAP 295
Query: 64 STSRVHCRAAEGG--GLRPVPAVPLPGPAGRSGGPGAWSAQKHGGHLSGRAGGTGRKTEG 121
+ A GG G P PA GPAG SG PG +A A G K E
Sbjct: 296 AVPPP-AAAQNGGSAGAAPAPAPAAGGPAGVSGQPGPGAA--------AAAPAPGVKAES 346
Query: 122 LARAPGGAP 130
R AP
Sbjct: 347 PKRVVQAAP 355
Score = 35.0 bits (79), Expect = 0.040
Identities = 27/80 (33%), Positives = 33/80 (41%), Gaps = 7/80 (8%)
Query: 20 PPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGKAPPGAAKSTSRVHCRAAEGGGLR 79
PP RP + G + + AA+ + P AP G AK A G G
Sbjct: 121 PPAAKLRPPPEGSAGSCAPV-----PAAAAVAAGPEPAPAGPAKPAGPAALAARAGPGPG 175
Query: 80 PVPAVPLPGPA-GRSGGPGA 98
P P P PGP G+ GPGA
Sbjct: 176 PGPG-PGPGPGPGKPAGPGA 194
Score = 31.6 bits (70), Expect = 0.44
Identities = 59/222 (26%), Positives = 77/222 (34%), Gaps = 45/222 (20%)
Query: 12 PASWSAAGPPDGAGRPAEHEAT----GGASSLHIKCMEA----------ASLLPRP---- 53
P GP G G+PA A G A+ L+ A A+LLP P
Sbjct: 174 PGPGPGPGPGPGPGKPAGPGAAQTLNGSAALLNSHHAAAPAVSLVNNGPAALLPLPKPAA 233
Query: 54 PG-----------KAPPG-AAKSTSRVHCRAAEGGGLRPVPAVP--LPGPAGRSGGP--G 97
PG APP AA S AA P P P L P G GP
Sbjct: 234 PGTVIQTPPFVGAAAPPAPAAPSPPAAPAPAAPAAAPPPPPPAPATLARPPGHPAGPPTA 293
Query: 98 AWSAQKHGGHLSGRAGGTGRKTEGLARAPGGA---PGHGLQGGQPHCCLQADS-RRILLL 153
A + +G + G A P G PG G P ++A+S +R++
Sbjct: 294 APAVPPPAAAQNGGSAGAAPAPAPAAGGPAGVSGQPGPGAAAAAPAPGVKAESPKRVVQA 353
Query: 154 AEQALR--AGLGARPSALDLVLSCAASVPFIHTALGRPRRCP 193
A A + A G +A +V+ P + AL P P
Sbjct: 354 APPAAQTLAASGPASTAASMVIG-----PTMQGALPSPAAVP 390
Score = 31.2 bits (69), Expect = 0.58
Identities = 30/82 (36%), Positives = 34/82 (41%), Gaps = 23/82 (28%)
Query: 52 RPPGKAPPGAAKSTSRVHCRAAEGGGLRPVPAVPLPGPAGRSGGPGAWSAQKHGGHLSGR 111
RPP P G+A S + V AA G P PA GPA + GP A L+ R
Sbjct: 127 RPP---PEGSAGSCAPVPAAAAVAAGPEPAPA----GPA-KPAGPAA---------LAAR 169
Query: 112 AGGTGRKTEGLARAPGGAPGHG 133
AG G PG PG G
Sbjct: 170 AG------PGPGPGPGPGPGPG 185
>gi|110735435 collagen, type V, alpha 3 preproprotein [Homo sapiens]
Length = 1745
Score = 41.6 bits (96), Expect = 4e-04
Identities = 34/115 (29%), Positives = 39/115 (33%), Gaps = 13/115 (11%)
Query: 17 AAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGKAPPGAAKSTSRVHCRAAEGG 76
AAGPP G P E A G + PG P S + E G
Sbjct: 1239 AAGPPGKKGPPGEDGAKGSVGPTGL------------PGDLGPPGDPGVSGIDGSPGEKG 1286
Query: 77 GLRPVPAVPLPGPAGRSGGPGAWSAQKHGGHLSGRAGGTGRKTEGLARAPGGAPG 131
V PG +G G PG + GH+ GR G G K P G PG
Sbjct: 1287 DPGDVGGPGPPGASGEPGAPGPPGKRGPSGHM-GREGREGEKGAKGEPGPDGPPG 1340
Score = 35.8 bits (81), Expect = 0.023
Identities = 42/147 (28%), Positives = 50/147 (34%), Gaps = 26/147 (17%)
Query: 11 TPASWSAAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGK----------APPG 60
+P GP G G P + + G K P P GK PPG
Sbjct: 1008 SPGERGPLGPAGGIGLPGQSGSEGPVGPAGKKGSRGERGPPGPTGKDGIPGPLGPLGPPG 1067
Query: 61 AAKSTSRVHCRAAEG-----------GGLRPVPAVPLPGPAGRSGGPGAWSAQKHGG--H 107
AA + + G G P + GPAG G PGA AQ G
Sbjct: 1068 AAGPSGEEGDKGDVGAPGHKGSKGDKGDAGPPGQPGIRGPAGHPGPPGADGAQGRRGPPG 1127
Query: 108 LSGRAGGTG-RKTEGLARAPG--GAPG 131
L G+ G G R G+ PG G PG
Sbjct: 1128 LFGQKGDDGVRGFVGVIGPPGLQGLPG 1154
Score = 34.7 bits (78), Expect = 0.052
Identities = 32/121 (26%), Positives = 40/121 (33%), Gaps = 2/121 (1%)
Query: 19 GPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGKAPPGAAKSTSRVHCRAAEGGGL 78
GP G P E G A + + + P GK + + G L
Sbjct: 1001 GPVGANGSPGERGPLGPAGGIGLPGQSGSEGPVGPAGKKGSRGERGPPGPTGKDGIPGPL 1060
Query: 79 RPVPAVPLPGPAGRSGGPGAWSAQKHGGHLSGRAGGTGRKTEGLARAPGGAPG-HGLQGG 137
P+ GP+G G G A H G G G G + R P G PG G G
Sbjct: 1061 GPLGPPGAAGPSGEEGDKGDVGAPGHKGS-KGDKGDAGPPGQPGIRGPAGHPGPPGADGA 1119
Query: 138 Q 138
Q
Sbjct: 1120 Q 1120
Score = 32.3 bits (72), Expect = 0.26
Identities = 19/53 (35%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Query: 87 PGPAGRSGGPGAWSAQKHGGHLSGRAGGTGRKTEGLARAPGGAPGHGLQGGQP 139
PGP G +G PG H G L G G G + + P G PG + G+P
Sbjct: 481 PGPVGLTGRPGPVGLPGHPG-LKGEEGAEGPQGPRGLQGPHGPPGRVGKMGRP 532
Score = 31.6 bits (70), Expect = 0.44
Identities = 34/113 (30%), Positives = 39/113 (34%), Gaps = 16/113 (14%)
Query: 19 GPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGKAPPGAAKSTSRVHCRAAEGGGL 78
GPP AG TG L + PPG P + + R G L
Sbjct: 911 GPPGPAGVLGPQGKTGEVGPLGER---------GPPGPPGPPGEQGLPGLEGREGAKGEL 961
Query: 79 RPVPAVPLPGPAGRSGGPGAWSAQKHGGHLSGRAGGTGRKTEGLARAPGGAPG 131
P + GPAG G PG GG G G TG K + P GA G
Sbjct: 962 GPPGPLGKEGPAGLRGFPG-----PKGG--PGDPGPTGLKGDKGPPGPVGANG 1007
Score = 31.6 bits (70), Expect = 0.44
Identities = 43/149 (28%), Positives = 51/149 (34%), Gaps = 36/149 (24%)
Query: 9 VSTPASWSAAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGKAPPGAAKSTSRV 68
V P A+G P G P + +G + + A P P G PPG T +
Sbjct: 1291 VGGPGPPGASGEPGAPGPPGKRGPSGHMGREGREGEKGAKGEPGPDG--PPGR---TGPM 1345
Query: 69 HCRAAEGG----GLRPVPA-------------VPLPGPAGRSGGPGAWSAQKHGGHLSGR 111
R G GLR +P + PGP G SG PG L G
Sbjct: 1346 GARGPPGRVGPEGLRGIPGPVGEPGLLGAPGQMGPPGPLGPSGLPG----------LKGD 1395
Query: 112 AGGTGRKTE----GLARAPGGAPGHGLQG 136
G G K GL PG A G QG
Sbjct: 1396 TGPKGEKGHIGLIGLIGPPGEAGEKGDQG 1424
Score = 30.0 bits (66), Expect = 1.3
Identities = 36/125 (28%), Positives = 39/125 (31%), Gaps = 24/125 (19%)
Query: 19 GPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGK-APPGAAKSTSRVHCRAAEGGG 77
GPP G P G + K S PPGK PPG E G
Sbjct: 1214 GPPGAPGIP------GPKGDIGEKGDSGPSGAAGPPGKKGPPG-------------EDGA 1254
Query: 78 LRPVPAVPLPGPAGRSGGPGAWSAQKHGGHLS--GRAGGTGRKTEGLARAPGGAPGHGLQ 135
V LPG G G PG G G GG G G + PG G +
Sbjct: 1255 KGSVGPTGLPGDLGPPGDPGVSGIDGSPGEKGDPGDVGGPG--PPGASGEPGAPGPPGKR 1312
Query: 136 GGQPH 140
G H
Sbjct: 1313 GPSGH 1317
Score = 28.1 bits (61), Expect = 4.9
Identities = 29/96 (30%), Positives = 39/96 (40%), Gaps = 4/96 (4%)
Query: 53 PPGK-APPGAAKSTSRVHCRAAEGGGLRPVPAVPLPGPAGRSGGPGAWSAQKHGGHLSGR 111
PPG+ PPG + +G P P PG G G PG+ H GH G
Sbjct: 633 PPGEPGPPGQQGNHGSQGLPGPQGLIGTPGEKGP-PGNPGIPGLPGSDGPLGHPGH-EGP 690
Query: 112 AGGTGRKTEGLARAPGGAPG-HGLQGGQPHCCLQAD 146
G G + + P G PG G++G + LQ +
Sbjct: 691 TGEKGAQGPPGSAGPPGYPGPRGVKGTSGNRGLQGE 726
Score = 28.1 bits (61), Expect = 4.9
Identities = 35/118 (29%), Positives = 41/118 (34%), Gaps = 20/118 (16%)
Query: 19 GPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGKAPPGAAKSTSRVHCRAAEGGGL 78
GPP G P E G ++ E A PPG P G +GG
Sbjct: 935 GPPGPPGPPGEQGLPG------LEGREGAKGELGPPG--PLGKEGPAGLRGFPGPKGGPG 986
Query: 79 RPVPA-----VPLPGPAGRSGGPGAWSAQKHGGHLSGRAGGTGRKTEGLARAPGGAPG 131
P P PGP G +G PG G L G AGG G + + P G G
Sbjct: 987 DPGPTGLKGDKGPPGPVGANGSPG------ERGPL-GPAGGIGLPGQSGSEGPVGPAG 1037
Score = 27.7 bits (60), Expect = 6.4
Identities = 34/125 (27%), Positives = 41/125 (32%), Gaps = 3/125 (2%)
Query: 16 SAAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPG-KAPPGAAKSTSRVHCRAAE 74
S GPP G G +K E A P G + P G ++ A+
Sbjct: 476 SMKGPPGPVGLTGRPGPVGLPGHPGLKGEEGAEGPQGPRGLQGPHGPPGRVGKMGRPGAD 535
Query: 75 GGGLRPVPAVPLPGPAGRSGGPGAWSAQKHGGHLSGRAGGTGRKTEGLARAPGGAPGHGL 134
G P P G G G PG + G G G G E R G PG
Sbjct: 536 GARGLPGDTGP-KGDRGFDGLPGLPGEKGQRGDF-GHVGQPGPPGEDGERGAEGPPGPTG 593
Query: 135 QGGQP 139
Q G+P
Sbjct: 594 QAGEP 598
Score = 27.3 bits (59), Expect = 8.4
Identities = 22/61 (36%), Positives = 25/61 (40%), Gaps = 8/61 (13%)
Query: 87 PGPAGRSGGPGAWSAQKHGGHLS--GRAGGTGRK-TEGLARAPG-----GAPGHGLQGGQ 138
PG G G PGA G + G G G K GL PG G PGH + G+
Sbjct: 835 PGSRGERGQPGATGQPGPKGDVGQDGAPGIPGEKGLPGLQGPPGFPGPKGPPGHQGKDGR 894
Query: 139 P 139
P
Sbjct: 895 P 895
>gi|239753839 PREDICTED: hypothetical protein [Homo sapiens]
Length = 257
Score = 41.2 bits (95), Expect = 6e-04
Identities = 46/144 (31%), Positives = 57/144 (39%), Gaps = 11/144 (7%)
Query: 2 HGGVRSLVSTPASWSAAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGKAPPGA 61
H G + PA +A GPP A R A A A+ R P AP A
Sbjct: 68 HPGAGGPLCFPARSAAWGPPARASRAAGRRAGPAGPPCRAPGRGRAAATRRSP--APGTA 125
Query: 62 AKSTSRVH----CRAAEGGGLRPVPAVPLPGP-AGRSGGPGAWSAQKHGGHLSGRAGGTG 116
S + V AA G R VPA LP P G S G G+ + ++ G R+ +
Sbjct: 126 RGSPAGVERAGGATAASSAGTRSVPARRLPPPCGGTSLGAGSRALRRPGSAALPRSPSSS 185
Query: 117 RKTEGLARAPG-GAPGHGLQGGQP 139
R+ A PG GAP G G P
Sbjct: 186 RR---WAAMPGPGAPRPGAPGTWP 206
>gi|119508426 alpha 3 type IX collagen [Homo sapiens]
Length = 684
Score = 41.2 bits (95), Expect = 6e-04
Identities = 40/134 (29%), Positives = 48/134 (35%), Gaps = 20/134 (14%)
Query: 4 GVRSLVSTPASWSAAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGKAPPGAAK 63
G + L P +GPP G G +G LP PPG PPG
Sbjct: 115 GGKGLPGPPGEAGVSGPPGGIGLRGPPGPSGLPG------------LPGPPG--PPGPPG 160
Query: 64 STSRVHCRAAEGGGLRPVPAVPLPGPAGRSGGPGAWSAQKHGGHLSGRAGGTGRKTEGLA 123
+ EG P++ PGP G G PG + G G G G K +
Sbjct: 161 HPGVL----PEGATDLQCPSICPPGPPGPPGMPGFKGPTGYKGE-QGEVGKDGEKGDPGP 215
Query: 124 RAPGGAPGH-GLQG 136
P G PG GLQG
Sbjct: 216 PGPAGLPGSVGLQG 229
Score = 33.1 bits (74), Expect = 0.15
Identities = 28/84 (33%), Positives = 33/84 (39%), Gaps = 5/84 (5%)
Query: 50 LPRPPGKAPPGAAKSTSRVHCRAAEGGGLRPVPAVPLPGPAGRSGGPGAWSAQKHGG--H 107
+P PGKA + R +G RP P PG AG SG PG G
Sbjct: 257 IPGAPGKAGDRGERGPEGF--RGPKGDLGRPGPK-GTPGVAGPSGEPGMPGKDGQNGVPG 313
Query: 108 LSGRAGGTGRKTEGLARAPGGAPG 131
L G+ G GR + P G PG
Sbjct: 314 LDGQKGEAGRNGAPGEKGPNGLPG 337
Score = 32.7 bits (73), Expect = 0.20
Identities = 28/90 (31%), Positives = 29/90 (32%), Gaps = 10/90 (11%)
Query: 50 LPRPPGKAPPGAAKSTSRVHCRAAEGGGLRPVPAVPLPGPAGRSGGPGAWSAQKHGGHLS 109
LP PPG P + A G LPGP G G PG G L
Sbjct: 30 LPGPPGPPGPPGKPGQDGIDGEAGPPG---------LPGPPGPKGAPGKPGKPGEAG-LP 79
Query: 110 GRAGGTGRKTEGLARAPGGAPGHGLQGGQP 139
G G G P GAPG G P
Sbjct: 80 GLPGVDGLTGRDGPPGPKGAPGERGSLGPP 109
Score = 30.4 bits (67), Expect = 0.99
Identities = 31/88 (35%), Positives = 35/88 (39%), Gaps = 17/88 (19%)
Query: 50 LPRPPGKAPPGAAKSTSRVHCRAAEGGGLRPVPAVPLPGPAGRSGGPGAWSAQKHGGHLS 109
LP PG+A +K RA E G P +PG AG G G GH
Sbjct: 335 LPGLPGRA---GSKGEKGERGRAGELGEAGPSGEPGVPGDAGMPGERG------EAGH-R 384
Query: 110 GRAGGTGRKTEGLARAPGGAPG-HGLQG 136
G AG G + P GAPG G QG
Sbjct: 385 GSAGALG------PQGPPGAPGVRGFQG 406
Score = 28.1 bits (61), Expect = 4.9
Identities = 20/58 (34%), Positives = 23/58 (39%), Gaps = 8/58 (13%)
Query: 87 PGPAGRSGGPGAWSAQKHGGHL--------SGRAGGTGRKTEGLARAPGGAPGHGLQG 136
PGPAG G PG + H G +G G G + R GA G GL G
Sbjct: 556 PGPAGPPGPPGPPGSIGHPGARGPPGYRGPTGELGDPGPRGNQGDRGDKGAAGAGLDG 613
>gi|148536823 type IV alpha 6 collagen isoform A precursor [Homo
sapiens]
Length = 1691
Score = 40.4 bits (93), Expect = 0.001
Identities = 40/151 (26%), Positives = 52/151 (34%), Gaps = 28/151 (18%)
Query: 4 GVRSLVSTPASWSAAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGK-APPGAA 62
GV L + A GP G + + G +++ + LP PPG PP
Sbjct: 386 GVPGLPALSGVPGALGPQGFPGLKGD-QGNPGRTTIGAAGLPGRDGLPGPPGPPGPPSPE 444
Query: 63 KSTSRVHCRAAEGGGLRPVPA----------------------VPLPGPAGRSGGPGAWS 100
T +H + + GLR VP GP G G PG W
Sbjct: 445 FETETLHNKESGFPGLRGEQGPKGNLGLKGIKGDSGFCACDGGVPNTGPPGEPGPPGPWG 504
Query: 101 AQKHGGHLSGRAGGTGRKTEGLARAPGGAPG 131
L G G G + G A+ P GAPG
Sbjct: 505 LI----GLPGLKGARGDRGSGGAQGPAGAPG 531
Score = 35.0 bits (79), Expect = 0.040
Identities = 42/150 (28%), Positives = 55/150 (36%), Gaps = 18/150 (12%)
Query: 4 GVRSLVSTPASWSAAGPPDGAGRPAEHEATGGASSLHIKC-MEAASLLPRPPGKAPPGAA 62
G R L P S GP AG P E G + I S L K G+A
Sbjct: 918 GTRGLKGIPGSTGKMGPSGRAGTPGEKGDRGNPGPVGIPSPRRPMSNLWLKGDKGSQGSA 977
Query: 63 KSTSRVHCRAAEGGGLRP----VPAVP-----LPGPAGRSGGPGAWSAQKHGGHLSGRAG 113
S R +G RP +P P + G +G+ G PG + G L G +G
Sbjct: 978 GSNGFPGPRGDKGEAGRPGPPGLPGAPGLPGIIKGVSGKPGPPGFMGIRGLPG-LKGSSG 1036
Query: 114 GTG-------RKTEGLARAPGGAPGHGLQG 136
TG ++G+ +PG GL G
Sbjct: 1037 ITGFPGMPGESGSQGIRGSPGLPGASGLPG 1066
Score = 29.3 bits (64), Expect = 2.2
Identities = 39/137 (28%), Positives = 43/137 (31%), Gaps = 8/137 (5%)
Query: 8 LVSTPASWSAAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGKAPPGAAKSTSR 67
L P AG G P G L + P PG T
Sbjct: 1125 LPGAPGFPGVAGMRGEPGLPGSSGHQGAIGPLGSPGLIGPKGFPGFPGLHGLNGLPGTKG 1184
Query: 68 VHCRAAEGGGLRPVPA-VPLPGPAGRSGGPGAWSAQKHGGHLSGRAGGTG-RKTEGLARA 125
H G + VP LPGP G G PG L G+ G G +G A
Sbjct: 1185 TH--GTPGPSITGVPGPAGLPGPKGEKGYPGIGIGAPGKPGLRGQKGDRGFPGLQGPAGL 1242
Query: 126 PGGAPGHGLQ---GGQP 139
P GAPG L GQP
Sbjct: 1243 P-GAPGISLPSLIAGQP 1258
Score = 28.1 bits (61), Expect = 4.9
Identities = 40/146 (27%), Positives = 49/146 (33%), Gaps = 33/146 (22%)
Query: 4 GVRSLVSTPASWSAAGPPDGAGRPAEHEATG--GASSLH-----IKCMEAASLLPRPPGK 56
G + TP GPP G P G G+S L EA + P P G
Sbjct: 1328 GEPGFMGTPGK---VGPPGDPGFPGMKGKAGPRGSSGLQGDPGQTPTAEAVQVPPGPLGL 1384
Query: 57 APPGAAKSTSRVHCRAAEGG----GLRPVPAVP-------LPGPAGRSGGPGAWSAQKHG 105
PG A+G G + +P +P LPGP G G PG
Sbjct: 1385 --PGIDGIPGLTGDPGAQGPVGLQGSKGLPGIPGKDGPSGLPGPPGALGDPG-------- 1434
Query: 106 GHLSGRAGGTGRKTEGLARAPGGAPG 131
L G G G + + P G PG
Sbjct: 1435 --LPGLQGPPGFEGAPGQQGPFGMPG 1458
Score = 27.3 bits (59), Expect = 8.4
Identities = 23/58 (39%), Positives = 26/58 (44%), Gaps = 5/58 (8%)
Query: 87 PGPAGRSGGPGAWSAQKHGGH--LSGRAGGTGRKTEGLARAPGGAPGH-GLQG--GQP 139
PGPAG G PG S Q G G G G K + G PG GL+G G+P
Sbjct: 1273 PGPAGPPGPPGPSSNQGDTGDPGFPGIPGPKGPKGDQGIPGFSGLPGELGLKGMRGEP 1330
>gi|16357503 type IV alpha 6 collagen isoform B precursor [Homo
sapiens]
Length = 1690
Score = 40.4 bits (93), Expect = 0.001
Identities = 40/151 (26%), Positives = 52/151 (34%), Gaps = 28/151 (18%)
Query: 4 GVRSLVSTPASWSAAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGK-APPGAA 62
GV L + A GP G + + G +++ + LP PPG PP
Sbjct: 385 GVPGLPALSGVPGALGPQGFPGLKGD-QGNPGRTTIGAAGLPGRDGLPGPPGPPGPPSPE 443
Query: 63 KSTSRVHCRAAEGGGLRPVPA----------------------VPLPGPAGRSGGPGAWS 100
T +H + + GLR VP GP G G PG W
Sbjct: 444 FETETLHNKESGFPGLRGEQGPKGNLGLKGIKGDSGFCACDGGVPNTGPPGEPGPPGPWG 503
Query: 101 AQKHGGHLSGRAGGTGRKTEGLARAPGGAPG 131
L G G G + G A+ P GAPG
Sbjct: 504 LI----GLPGLKGARGDRGSGGAQGPAGAPG 530
Score = 35.0 bits (79), Expect = 0.040
Identities = 42/150 (28%), Positives = 55/150 (36%), Gaps = 18/150 (12%)
Query: 4 GVRSLVSTPASWSAAGPPDGAGRPAEHEATGGASSLHIKC-MEAASLLPRPPGKAPPGAA 62
G R L P S GP AG P E G + I S L K G+A
Sbjct: 917 GTRGLKGIPGSTGKMGPSGRAGTPGEKGDRGNPGPVGIPSPRRPMSNLWLKGDKGSQGSA 976
Query: 63 KSTSRVHCRAAEGGGLRP----VPAVP-----LPGPAGRSGGPGAWSAQKHGGHLSGRAG 113
S R +G RP +P P + G +G+ G PG + G L G +G
Sbjct: 977 GSNGFPGPRGDKGEAGRPGPPGLPGAPGLPGIIKGVSGKPGPPGFMGIRGLPG-LKGSSG 1035
Query: 114 GTG-------RKTEGLARAPGGAPGHGLQG 136
TG ++G+ +PG GL G
Sbjct: 1036 ITGFPGMPGESGSQGIRGSPGLPGASGLPG 1065
Score = 29.3 bits (64), Expect = 2.2
Identities = 39/137 (28%), Positives = 43/137 (31%), Gaps = 8/137 (5%)
Query: 8 LVSTPASWSAAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGKAPPGAAKSTSR 67
L P AG G P G L + P PG T
Sbjct: 1124 LPGAPGFPGVAGMRGEPGLPGSSGHQGAIGPLGSPGLIGPKGFPGFPGLHGLNGLPGTKG 1183
Query: 68 VHCRAAEGGGLRPVPA-VPLPGPAGRSGGPGAWSAQKHGGHLSGRAGGTG-RKTEGLARA 125
H G + VP LPGP G G PG L G+ G G +G A
Sbjct: 1184 TH--GTPGPSITGVPGPAGLPGPKGEKGYPGIGIGAPGKPGLRGQKGDRGFPGLQGPAGL 1241
Query: 126 PGGAPGHGLQ---GGQP 139
P GAPG L GQP
Sbjct: 1242 P-GAPGISLPSLIAGQP 1257
Score = 28.1 bits (61), Expect = 4.9
Identities = 40/146 (27%), Positives = 49/146 (33%), Gaps = 33/146 (22%)
Query: 4 GVRSLVSTPASWSAAGPPDGAGRPAEHEATG--GASSLH-----IKCMEAASLLPRPPGK 56
G + TP GPP G P G G+S L EA + P P G
Sbjct: 1327 GEPGFMGTPGK---VGPPGDPGFPGMKGKAGPRGSSGLQGDPGQTPTAEAVQVPPGPLGL 1383
Query: 57 APPGAAKSTSRVHCRAAEGG----GLRPVPAVP-------LPGPAGRSGGPGAWSAQKHG 105
PG A+G G + +P +P LPGP G G PG
Sbjct: 1384 --PGIDGIPGLTGDPGAQGPVGLQGSKGLPGIPGKDGPSGLPGPPGALGDPG-------- 1433
Query: 106 GHLSGRAGGTGRKTEGLARAPGGAPG 131
L G G G + + P G PG
Sbjct: 1434 --LPGLQGPPGFEGAPGQQGPFGMPG 1457
Score = 27.3 bits (59), Expect = 8.4
Identities = 23/58 (39%), Positives = 26/58 (44%), Gaps = 5/58 (8%)
Query: 87 PGPAGRSGGPGAWSAQKHGGH--LSGRAGGTGRKTEGLARAPGGAPGH-GLQG--GQP 139
PGPAG G PG S Q G G G G K + G PG GL+G G+P
Sbjct: 1272 PGPAGPPGPPGPSSNQGDTGDPGFPGIPGPKGPKGDQGIPGFSGLPGELGLKGMRGEP 1329
>gi|206597445 alpha 1 type XVIII collagen isoform 3 precursor [Homo
sapiens]
Length = 1751
Score = 40.0 bits (92), Expect = 0.001
Identities = 41/141 (29%), Positives = 50/141 (35%), Gaps = 24/141 (17%)
Query: 19 GPPDGAGRPAEHEAT------GGASSLHIKCMEAASLLPRPPGK-APPGAAKSTSRVHCR 71
GPP G H+ G ++ + P PPG PG R
Sbjct: 867 GPPGPPGPSFRHDKLTFIDMEGSGFGGDLEALRGPRGFPGPPGPPGVPGLPGEPGRFGVN 926
Query: 72 AAEGGGLRPVPAVP-------------LPGPAGRSGGPGAWSAQKHGGHLSGRAGGTGRK 118
+++ G +P VP PGP GR G PG + QK G L G AG G K
Sbjct: 927 SSDVPGPAGLPGVPGREGPPGFPGLPGPPGPPGREGPPGR-TGQK--GSL-GEAGAPGHK 982
Query: 119 TEGLARAPGGAPGHGLQGGQP 139
A P GA G G P
Sbjct: 983 GSKGAPGPAGARGESGLAGAP 1003
Score = 33.5 bits (75), Expect = 0.12
Identities = 34/103 (33%), Positives = 43/103 (41%), Gaps = 19/103 (18%)
Query: 50 LPRPPGKA-PPGAA--KSTSRVHCRAAE----GGGLRPVPAVP-LPGPAGRSGGPGAWSA 101
+P PPG+A PPG+ + C + G L+ VP PGP GR G PG
Sbjct: 762 VPGPPGRAGPPGSPCLPGPPGLPCPVSPLGPAGPALQTVPGPQGPPGPPGRDGTPGRDGE 821
Query: 102 QKHGGHLSGRAGGTGRKTEGLARAPG--------GAPGHGLQG 136
G G+ G TG +G PG G PG G +G
Sbjct: 822 PGDPGE-DGKPGDTG--PQGFPGTPGDVGPKGDKGDPGVGERG 861
Score = 28.5 bits (62), Expect = 3.7
Identities = 30/118 (25%), Positives = 40/118 (33%), Gaps = 4/118 (3%)
Query: 22 DGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGKAPPGAAKSTSRVHCRAAEGGGLRPV 81
DG G+P G + + S+L P + PG A A G L
Sbjct: 1110 DGVGQPGLPGPPGPPGPVVYVSEQDGSVLSVPGPEGRPGFAGFPGP----AGPKGNLGSK 1165
Query: 82 PAVPLPGPAGRSGGPGAWSAQKHGGHLSGRAGGTGRKTEGLARAPGGAPGHGLQGGQP 139
PGP G G PG+ + G + G G P G PG+ + G P
Sbjct: 1166 GERGSPGPKGEKGEPGSIFSPDGGALGPAQKGAKGEPGFRGPPGPYGRPGYKGEIGFP 1223
Score = 27.7 bits (60), Expect = 6.4
Identities = 33/131 (25%), Positives = 42/131 (32%), Gaps = 17/131 (12%)
Query: 12 PASWSAAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGKAPPGAAKSTSRVHCR 71
PA A G P G P + G + P PG+ K
Sbjct: 1193 PAQKGAKGEPGFRGPPGPYGRPGYKGEIGF---------PGRPGRPGMNGLKGEKGEPGD 1243
Query: 72 AAEGGGLRPVPAVPLPGPAGRSGGPGAWSAQKHGGHL---SGRAGGTGRKTEGLARAPGG 128
A+ G G+R +PGP G G PG + ++ S R G G P G
Sbjct: 1244 ASLGFGMRG-----MPGPPGPPGPPGPPGTPVYDSNVFAESSRPGPPGLPGNQGPPGPKG 1298
Query: 129 APGHGLQGGQP 139
A G G P
Sbjct: 1299 AKGEVGPPGPP 1309
>gi|110611233 alpha 1 type XVIII collagen isoform 2 precursor [Homo
sapiens]
Length = 1336
Score = 40.0 bits (92), Expect = 0.001
Identities = 41/141 (29%), Positives = 50/141 (35%), Gaps = 24/141 (17%)
Query: 19 GPPDGAGRPAEHEAT------GGASSLHIKCMEAASLLPRPPGK-APPGAAKSTSRVHCR 71
GPP G H+ G ++ + P PPG PG R
Sbjct: 452 GPPGPPGPSFRHDKLTFIDMEGSGFGGDLEALRGPRGFPGPPGPPGVPGLPGEPGRFGVN 511
Query: 72 AAEGGGLRPVPAVP-------------LPGPAGRSGGPGAWSAQKHGGHLSGRAGGTGRK 118
+++ G +P VP PGP GR G PG + QK G L G AG G K
Sbjct: 512 SSDVPGPAGLPGVPGREGPPGFPGLPGPPGPPGREGPPGR-TGQK--GSL-GEAGAPGHK 567
Query: 119 TEGLARAPGGAPGHGLQGGQP 139
A P GA G G P
Sbjct: 568 GSKGAPGPAGARGESGLAGAP 588
Score = 33.5 bits (75), Expect = 0.12
Identities = 34/103 (33%), Positives = 43/103 (41%), Gaps = 19/103 (18%)
Query: 50 LPRPPGKA-PPGAA--KSTSRVHCRAAE----GGGLRPVPAVP-LPGPAGRSGGPGAWSA 101
+P PPG+A PPG+ + C + G L+ VP PGP GR G PG
Sbjct: 347 VPGPPGRAGPPGSPCLPGPPGLPCPVSPLGPAGPALQTVPGPQGPPGPPGRDGTPGRDGE 406
Query: 102 QKHGGHLSGRAGGTGRKTEGLARAPG--------GAPGHGLQG 136
G G+ G TG +G PG G PG G +G
Sbjct: 407 PGDPGE-DGKPGDTG--PQGFPGTPGDVGPKGDKGDPGVGERG 446
Score = 28.5 bits (62), Expect = 3.7
Identities = 30/118 (25%), Positives = 40/118 (33%), Gaps = 4/118 (3%)
Query: 22 DGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGKAPPGAAKSTSRVHCRAAEGGGLRPV 81
DG G+P G + + S+L P + PG A A G L
Sbjct: 695 DGVGQPGLPGPPGPPGPVVYVSEQDGSVLSVPGPEGRPGFAGFPGP----AGPKGNLGSK 750
Query: 82 PAVPLPGPAGRSGGPGAWSAQKHGGHLSGRAGGTGRKTEGLARAPGGAPGHGLQGGQP 139
PGP G G PG+ + G + G G P G PG+ + G P
Sbjct: 751 GERGSPGPKGEKGEPGSIFSPDGGALGPAQKGAKGEPGFRGPPGPYGRPGYKGEIGFP 808
Score = 27.7 bits (60), Expect = 6.4
Identities = 33/131 (25%), Positives = 42/131 (32%), Gaps = 17/131 (12%)
Query: 12 PASWSAAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGKAPPGAAKSTSRVHCR 71
PA A G P G P + G + P PG+ K
Sbjct: 778 PAQKGAKGEPGFRGPPGPYGRPGYKGEIGF---------PGRPGRPGMNGLKGEKGEPGD 828
Query: 72 AAEGGGLRPVPAVPLPGPAGRSGGPGAWSAQKHGGHL---SGRAGGTGRKTEGLARAPGG 128
A+ G G+R +PGP G G PG + ++ S R G G P G
Sbjct: 829 ASLGFGMRG-----MPGPPGPPGPPGPPGTPVYDSNVFAESSRPGPPGLPGNQGPPGPKG 883
Query: 129 APGHGLQGGQP 139
A G G P
Sbjct: 884 AKGEVGPPGPP 894
>gi|110611235 alpha 1 type XVIII collagen isoform 1 precursor [Homo
sapiens]
Length = 1516
Score = 40.0 bits (92), Expect = 0.001
Identities = 41/141 (29%), Positives = 50/141 (35%), Gaps = 24/141 (17%)
Query: 19 GPPDGAGRPAEHEAT------GGASSLHIKCMEAASLLPRPPGK-APPGAAKSTSRVHCR 71
GPP G H+ G ++ + P PPG PG R
Sbjct: 632 GPPGPPGPSFRHDKLTFIDMEGSGFGGDLEALRGPRGFPGPPGPPGVPGLPGEPGRFGVN 691
Query: 72 AAEGGGLRPVPAVP-------------LPGPAGRSGGPGAWSAQKHGGHLSGRAGGTGRK 118
+++ G +P VP PGP GR G PG + QK G L G AG G K
Sbjct: 692 SSDVPGPAGLPGVPGREGPPGFPGLPGPPGPPGREGPPGR-TGQK--GSL-GEAGAPGHK 747
Query: 119 TEGLARAPGGAPGHGLQGGQP 139
A P GA G G P
Sbjct: 748 GSKGAPGPAGARGESGLAGAP 768
Score = 33.5 bits (75), Expect = 0.12
Identities = 34/103 (33%), Positives = 43/103 (41%), Gaps = 19/103 (18%)
Query: 50 LPRPPGKA-PPGAA--KSTSRVHCRAAE----GGGLRPVPAVP-LPGPAGRSGGPGAWSA 101
+P PPG+A PPG+ + C + G L+ VP PGP GR G PG
Sbjct: 527 VPGPPGRAGPPGSPCLPGPPGLPCPVSPLGPAGPALQTVPGPQGPPGPPGRDGTPGRDGE 586
Query: 102 QKHGGHLSGRAGGTGRKTEGLARAPG--------GAPGHGLQG 136
G G+ G TG +G PG G PG G +G
Sbjct: 587 PGDPGE-DGKPGDTG--PQGFPGTPGDVGPKGDKGDPGVGERG 626
Score = 28.5 bits (62), Expect = 3.7
Identities = 30/118 (25%), Positives = 40/118 (33%), Gaps = 4/118 (3%)
Query: 22 DGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGKAPPGAAKSTSRVHCRAAEGGGLRPV 81
DG G+P G + + S+L P + PG A A G L
Sbjct: 875 DGVGQPGLPGPPGPPGPVVYVSEQDGSVLSVPGPEGRPGFAGFPGP----AGPKGNLGSK 930
Query: 82 PAVPLPGPAGRSGGPGAWSAQKHGGHLSGRAGGTGRKTEGLARAPGGAPGHGLQGGQP 139
PGP G G PG+ + G + G G P G PG+ + G P
Sbjct: 931 GERGSPGPKGEKGEPGSIFSPDGGALGPAQKGAKGEPGFRGPPGPYGRPGYKGEIGFP 988
Score = 27.7 bits (60), Expect = 6.4
Identities = 33/131 (25%), Positives = 42/131 (32%), Gaps = 17/131 (12%)
Query: 12 PASWSAAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGKAPPGAAKSTSRVHCR 71
PA A G P G P + G + P PG+ K
Sbjct: 958 PAQKGAKGEPGFRGPPGPYGRPGYKGEIGF---------PGRPGRPGMNGLKGEKGEPGD 1008
Query: 72 AAEGGGLRPVPAVPLPGPAGRSGGPGAWSAQKHGGHL---SGRAGGTGRKTEGLARAPGG 128
A+ G G+R +PGP G G PG + ++ S R G G P G
Sbjct: 1009 ASLGFGMRG-----MPGPPGPPGPPGPPGTPVYDSNVFAESSRPGPPGLPGNQGPPGPKG 1063
Query: 129 APGHGLQGGQP 139
A G G P
Sbjct: 1064 AKGEVGPPGPP 1074
>gi|148536825 alpha 1 type IV collagen preproprotein [Homo sapiens]
Length = 1669
Score = 39.3 bits (90), Expect = 0.002
Identities = 37/124 (29%), Positives = 40/124 (32%), Gaps = 22/124 (17%)
Query: 19 GPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGKAPPGAAKSTSRVHCRAAEGGGL 78
GPP G G P TG P PPG P G + G
Sbjct: 586 GPPGGVGFPGSRGDTGP---------------PGPPGYGPAGPIGDKGQAGFPGGPGSPG 630
Query: 79 RPVPA------VPLPGPAGRSGGPGAWSAQKHGGHLSGRAGGTGRKTEGLARAPGGAPGH 132
P P VPLPGP G G PG+ G G G GR + G PG
Sbjct: 631 LPGPKGEPGKIVPLPGPPGAEGLPGSPGFPGPQGD-RGFPGTPGRPGLPGEKGAVGQPGI 689
Query: 133 GLQG 136
G G
Sbjct: 690 GFPG 693
Score = 37.4 bits (85), Expect = 0.008
Identities = 33/94 (35%), Positives = 38/94 (40%), Gaps = 17/94 (18%)
Query: 51 PRPPGKAPPGAAKSTSRVHCRAAEGGGLRPVPAVPLPGPAGRSGGPGAWSAQKHGGHLSG 110
P PPG PG A + R +G R P LPGP+GR G PG G
Sbjct: 370 PGPPGLPVPGQAGAPGFPGERGEKGD--RGFPGTSLPGPSGRDGLPGP----------PG 417
Query: 111 RAGGTGRK--TEGLARAPGGAPG-HGLQG--GQP 139
G G+ T G+ G PG G G GQP
Sbjct: 418 SPGPPGQPGYTNGIVECQPGPPGDQGPPGIPGQP 451
Score = 33.1 bits (74), Expect = 0.15
Identities = 40/144 (27%), Positives = 52/144 (36%), Gaps = 15/144 (10%)
Query: 4 GVRSLVSTPASWSAAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPG-------K 56
G++ ++ P GP G+ + G + + AS P PG
Sbjct: 55 GLQGVIGFPGMQGPEGPQGPPGQKGDTGEPGLPGTKGTRGPPGASGYPGNPGLPGIPGQD 114
Query: 57 APPGAAKSTSRVHCRAAEGGGLRPVPAVPLPGPAGRSGGPGAWSAQKHGGHLSGRAGGTG 116
PPG C +G P+ LPG AG G PG + G + G G
Sbjct: 115 GPPGPPGIPG---CNGTKGER-GPLGPPGLPGFAGNPGPPGLPGMKGDPGEILGHVPGML 170
Query: 117 RKTE-GLARAPG--GAPG-HGLQG 136
K E G PG G PG GLQG
Sbjct: 171 LKGERGFPGIPGTPGPPGLPGLQG 194
Score = 28.5 bits (62), Expect = 3.7
Identities = 43/149 (28%), Positives = 48/149 (32%), Gaps = 47/149 (31%)
Query: 4 GVRSLVSTPASWSAAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGKAPPGAAK 63
G+ + TP + G P G P EH A G I+ P PPG PG+
Sbjct: 746 GLPGIPGTPGEKGSIGVP---GVPGEHGAIGPPGLQGIRGE------PGPPGL--PGSVG 794
Query: 64 STSRVHCRAAEGGGLRPVPAVPLPGPAGRSGGPGAWSAQKHGGHLSGRAGGTGRKTEGLA 123
S P VP GP G G PG LSG G G K G
Sbjct: 795 S-----------------PGVPGIGPPGARGPPGGQGPP----GLSGPPGIKGEK--GFP 831
Query: 124 RAPG-------------GAPGHGLQGGQP 139
PG G PG Q G P
Sbjct: 832 GFPGLDMPGPKGDKGAQGLPGITGQSGLP 860
Score = 28.5 bits (62), Expect = 3.7
Identities = 37/145 (25%), Positives = 47/145 (32%), Gaps = 26/145 (17%)
Query: 4 GVRSLVSTPASWSAAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGKAPPGAAK 63
GV+ P + GP G P G A P PG+ PG
Sbjct: 1130 GVKGEAGLPGTPGPTGPAGQKGEPGSDGIPGSAGEKGE---------PGLPGRGFPGFPG 1180
Query: 64 STSRVHCRAAEG-GGLRPVPAVP----------LPGPAGRSGGPGAWSAQKHGGHLSGRA 112
+ + G GL P +P PGP G+ G PG+ G G
Sbjct: 1181 AKGDKGSKGEVGFPGLAGSPGIPGSKGEQGFMGPPGPQGQPGLPGS-----PGHATEGPK 1235
Query: 113 GGTGRKTE-GLARAPGGAPGHGLQG 136
G G + + GL PG GL G
Sbjct: 1236 GDRGPQGQPGLPGLPGPMGPPGLPG 1260
Score = 28.1 bits (61), Expect = 4.9
Identities = 39/147 (26%), Positives = 47/147 (31%), Gaps = 24/147 (16%)
Query: 4 GVRSLVSTPASWSAAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGK------- 56
G++ V P GPP G P E + G S K + + PPG
Sbjct: 191 GLQGPVGPPGFTGPPGPPGPPGPPGE-KGQMGLSFQGPKGDKGDQGVSGPPGVPGQAQVQ 249
Query: 57 -----APPGAAKSTSRVHCRAAEGGGLRPVPAVPLP-------GPAGRSGGPGAWSAQKH 104
A G + G G + P P P G G G PG +
Sbjct: 250 EKGDFATKGEKGQKGEPGFQGMPGVGEKGEPGKPGPRGKPGKDGDKGEKGSPGFPGEPGY 309
Query: 105 GGHLSGRAGGTGRKTEGLARAPGGAPG 131
G L GR G G K E P G PG
Sbjct: 310 PG-LIGRQGPQGEKGEA---GPPGPPG 332
Score = 28.1 bits (61), Expect = 4.9
Identities = 33/100 (33%), Positives = 37/100 (37%), Gaps = 20/100 (20%)
Query: 53 PPGKAPPGAAKSTSRVHCRAAEGGGLRPVPAVPLP-GPAGRSGGPGAWSAQKHGGHLSGR 111
PPG PPG T + + G R P P P G G G PG L G+
Sbjct: 327 PPG--PPGIVIGTGPLGEK-----GERGYPGTPGPRGEPGPKGFPG----------LPGQ 369
Query: 112 AGGTGRKTEGLARAPGGAPGHGLQG--GQPHCCLQADSRR 149
G G G A APG G +G G P L S R
Sbjct: 370 PGPPGLPVPGQAGAPGFPGERGEKGDRGFPGTSLPGPSGR 409
Score = 28.1 bits (61), Expect = 4.9
Identities = 41/147 (27%), Positives = 52/147 (35%), Gaps = 29/147 (19%)
Query: 19 GPPDGAGRPAEHEATGGASSLHIKCMEAASLL-------PRPPG-KAPPGAAKSTSRVHC 70
GPP G P G + K + S L PPG + PPG +
Sbjct: 437 GPPGDQGPPGIPGQPGFIGEIGEKGQKGESCLICDIDGYRGPPGPQGPPGEIGFPGQPGA 496
Query: 71 RAAEG-GGLRPVPAVPLP-GPAGRSGGPGA--------WSAQKHGGH----------LSG 110
+ G G V VP P G G G PGA + + G ++G
Sbjct: 497 KGDRGLPGRDGVAGVPGPQGTPGLIGQPGAKGEPGEFYFDLRLKGDKGDPGFPGQPGMTG 556
Query: 111 RAGGTGRKTEGLARAPGGAPGH-GLQG 136
RAG GR P G+PG GL+G
Sbjct: 557 RAGSPGRDGHPGLPGPKGSPGSVGLKG 583
Score = 28.1 bits (61), Expect = 4.9
Identities = 36/137 (26%), Positives = 44/137 (32%), Gaps = 25/137 (18%)
Query: 9 VSTPASWSAAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGKAP-PGAAKSTSR 67
+ P G AG P G S+ I M + L PG PG+
Sbjct: 1057 IGIPGLRGEKGDQGIAGFPGSPGEKGEKGSIGIPGMPGSPGLKGSPGSVGYPGSPGLPGE 1116
Query: 68 VHCRAAEG-------GGLRPVPAVPLP-GPAGRSGGPGAWSAQKHGGHLSGRAGGTGRKT 119
+ G G +P P P GPAG+ G PG+ G G G K
Sbjct: 1117 KGDKGLPGLDGIPGVKGEAGLPGTPGPTGPAGQKGEPGS----------DGIPGSAGEKG 1166
Query: 120 EGLARAPGGAPGHGLQG 136
E G PG G G
Sbjct: 1167 E------PGLPGRGFPG 1177
>gi|239754955 PREDICTED: similar to COL22A1 protein [Homo sapiens]
Length = 1073
Score = 39.3 bits (90), Expect = 0.002
Identities = 39/140 (27%), Positives = 53/140 (37%), Gaps = 12/140 (8%)
Query: 2 HGGVRSLVSTPASWSAAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGKAPPGA 61
H G+ P GPP G+P G + S+ L +
Sbjct: 871 HTGLMGPQGLPGENGPVGPPGPPGQPGFPGLRGESPSMETLRRLIQEELGKQLETRLAYL 930
Query: 62 AKSTSRVHCRAAEGGGLRPVPAVP-----LPGPAGRSGGPGAWSAQKHGGHLSGRAGGTG 116
+ ++++G RP P P LPG AG G PG + G L G +G G
Sbjct: 931 LAQMPPAYMKSSQG---RPGPPGPPGKDGLPGRAGPMGEPG----RPGQGGLEGPSGPIG 983
Query: 117 RKTEGLARAPGGAPGHGLQG 136
K E A+ GAPG GL+G
Sbjct: 984 PKGERGAKGDPGAPGVGLRG 1003
Score = 33.9 bits (76), Expect = 0.089
Identities = 37/130 (28%), Positives = 45/130 (34%), Gaps = 10/130 (7%)
Query: 19 GPPDGAGRPAEHEATGGASSLHIKCMEAASLLPR---PPGK-APPGAAKSTSRVHCRAAE 74
GPP AG G + K + +P PPG PPGA +
Sbjct: 606 GPPGIAGPQGSQGERGADGEVGQKGDQGHPGVPGFMGPPGNPGPPGADGIAGAAGPPGIQ 665
Query: 75 GGGLRPVPAVPLPGPAGRSGGPGAWSAQKHGGHLS-----GRAGGTGRKTEGLARAPGGA 129
G + P P GP+G G PG + G G+AG G AR P G
Sbjct: 666 GSPGKEGPPGP-QGPSGLPGIPGEEGKEGRDGKPGPPGEPGKAGEPGLPGPEGARGPPGF 724
Query: 130 PGHGLQGGQP 139
GH G P
Sbjct: 725 KGHTGDSGAP 734
Score = 33.5 bits (75), Expect = 0.12
Identities = 42/144 (29%), Positives = 52/144 (36%), Gaps = 13/144 (9%)
Query: 4 GVRSLVSTPASWSAAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPR-PPGKAPPGAA 62
G R S + G P +G P + + G S + L PR PPG+
Sbjct: 768 GPRGPPGKNGSPGSPGEPGPSGTPGQKGSKGENGSPGLP----GFLGPRGPPGEPGEKGV 823
Query: 63 KSTSRVHCRAAEGG--GLRPVPAVPLP-GPAGRSGGPGAWSAQKHGGHLSGRAGGTGRKT 119
V + E G G R P + GP G G PG H GH +G G G
Sbjct: 824 PGKEGVPGKPGEPGFKGERGDPGIKGDKGPPGGKGQPGDPGIPGHKGH-TGLMGPQGLPG 882
Query: 120 EGLARAPGGAPGH----GLQGGQP 139
E P G PG GL+G P
Sbjct: 883 ENGPVGPPGPPGQPGFPGLRGESP 906
Score = 33.1 bits (74), Expect = 0.15
Identities = 40/131 (30%), Positives = 46/131 (35%), Gaps = 14/131 (10%)
Query: 17 AAGPPDGAGRPAEHEATG--GASSLH----IKCMEAASLLPRPPGKAPPGAAKSTSRVHC 70
AAGPP G P + G G S L + E P PPG+ PG A
Sbjct: 658 AAGPPGIQGSPGKEGPPGPQGPSGLPGIPGEEGKEGRDGKPGPPGE--PGKAGEPGLPGP 715
Query: 71 RAAEG--GGLRPVPAVPLPGPAGRSGGPGAWSAQKHGGHLSGRAGGTGRKTEGLARAPGG 128
A G G PGP G SG G + L G+ G TG + P G
Sbjct: 716 EGARGPPGFKGHTGDSGAPGPRGESGAMGLPGQEG----LPGKDGDTGPTGPQGPQGPRG 771
Query: 129 APGHGLQGGQP 139
PG G P
Sbjct: 772 PPGKNGSPGSP 782
Score = 32.0 bits (71), Expect = 0.34
Identities = 44/142 (30%), Positives = 50/142 (35%), Gaps = 20/142 (14%)
Query: 4 GVRSLVSTPASWSAAGPPDGAGRPA---EHEATGGASSLHIKCMEAASLLPRPPGKA-PP 59
G + L P AG P G P E G L + ++ G A PP
Sbjct: 271 GEQGLAGRPGEKGEAGLPGAPGFPGVRGEKGDQGEKGELGLPGLKGDRGEKGEAGPAGPP 330
Query: 60 GAAKSTSRV--HCRAAEGGGLRPVPAVP-LPGPAGRSGGPGAWSAQKHGGHLSGRAGGTG 116
G +TS H R G + P LPG G G PG Q G G G
Sbjct: 331 GLPGTTSLFTPHPRMPGEQGPKGEKGDPGLPGEPGLQGRPGELGPQ-------GPTGPPG 383
Query: 117 RK-TEGLARAPG-----GAPGH 132
K EG APG GAPGH
Sbjct: 384 AKGQEGAHGAPGAAGNPGAPGH 405
Score = 31.2 bits (69), Expect = 0.58
Identities = 26/87 (29%), Positives = 29/87 (33%), Gaps = 7/87 (8%)
Query: 53 PPGKAPPGAAKSTSRVHCRAAEGGGLRPVPAVPLPGPAGRSGGPGAWSAQKHGGHLSGRA 112
P G P AK H G V PGP+G G GA L G
Sbjct: 375 PQGPTGPPGAKGQEGAHGAPGAAGNPGAPGHVGAPGPSGPPGSVGA-------PGLRGTP 427
Query: 113 GGTGRKTEGLARAPGGAPGHGLQGGQP 139
G G + E A G+PG G P
Sbjct: 428 GKDGERGEKGAAGEEGSPGPVGPRGDP 454
Score = 28.1 bits (61), Expect = 4.9
Identities = 37/139 (26%), Positives = 41/139 (29%), Gaps = 21/139 (15%)
Query: 4 GVRSLVSTPASWSAAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGKAP----- 58
G L TP G AG G A LP PPGK
Sbjct: 419 GAPGLRGTPGKDGERGEKGAAGEEGSPGPVGPRGD------PGAPGLPGPPGKGKDGEPG 472
Query: 59 ----PGAAKSTSRVHCRAAEG----GGLRPVPAVPLPGPAGRSGGPGAWSAQKHGG--HL 108
PG R A G G R P + + GP G SG PG + G
Sbjct: 473 LRGSPGLPGPLGTKGDRGAPGIPGSPGSRGDPGIGVAGPPGPSGPPGDKGSPGSRGLPGF 532
Query: 109 SGRAGGTGRKTEGLARAPG 127
G G GR +PG
Sbjct: 533 PGPQGPAGRDGLSSLLSPG 551
Score = 27.7 bits (60), Expect = 6.4
Identities = 22/53 (41%), Positives = 24/53 (45%), Gaps = 4/53 (7%)
Query: 88 GPAGRSGGPGAWSAQKHGGHLSGRAGGTGRKTE-GLARAPG--GAPGH-GLQG 136
GPAG G PG S + G G G K + GL PG G PG G QG
Sbjct: 325 GPAGPPGLPGTTSLFTPHPRMPGEQGPKGEKGDPGLPGEPGLQGRPGELGPQG 377
>gi|47778921 alpha 1 type XIX collagen precursor [Homo sapiens]
Length = 1142
Score = 39.3 bits (90), Expect = 0.002
Identities = 40/138 (28%), Positives = 49/138 (35%), Gaps = 19/138 (13%)
Query: 4 GVRSLVSTPASWSAAGPPDGAGRPAEHEATGGASSLHIKCMEAASL----LPRPPGKA-P 58
G++ + S GPP G P EH G K + LP P G+A P
Sbjct: 522 GLKGQQGSAGSMGPRGPPGDVGLPGEHGIPGKQGIKGEKGDPGGIIGPPGLPGPKGEAGP 581
Query: 59 PGAAKSTSRVHCRAAEGGGLRPVPAVPLP-GPAGRSGGPGAWSAQ----KHGGHLSGRAG 113
PG + GL P P P GP G G PG + G + GR G
Sbjct: 582 PGKSLPGE---------PGLDGNPGAPGPRGPKGERGLPGVHGSPGDIGPQGIGIPGRTG 632
Query: 114 GTGRKTEGLARAPGGAPG 131
G E + P G PG
Sbjct: 633 AQGPAGEPGIQGPRGLPG 650
Score = 37.7 bits (86), Expect = 0.006
Identities = 35/125 (28%), Positives = 48/125 (38%), Gaps = 19/125 (15%)
Query: 10 STPASWSAAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGKAPPGAAKSTSRVH 69
S P S G GAG P ++++ + + P PG+ P +K
Sbjct: 702 SVPGLKSNKGEEGGAGEPGKYDSMARKGDIGPRGP------PGIPGREGPKGSKGERGYP 755
Query: 70 CRAAEGG--GLRPVPAVP-LPGPAGRSGGPGAWSAQKHGGHLSGRAGGTGRKTEGLARAP 126
E G GL+ +P +P PGP G G G +G G TG K E + P
Sbjct: 756 GIPGEKGDEGLQGIPGIPGAPGPTGPPGLMGR----------TGHPGPTGAKGEKGSDGP 805
Query: 127 GGAPG 131
G PG
Sbjct: 806 PGKPG 810
Score = 35.8 bits (81), Expect = 0.023
Identities = 42/146 (28%), Positives = 57/146 (39%), Gaps = 17/146 (11%)
Query: 5 VRSLVSTPASWSAAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGKA-PPGAAK 63
++ V+ P+ GPP G P G ++ + +E + G A PPG A
Sbjct: 831 IKGGVNVPSYPGPPGPPGPKGDPGP---VGEPGAMGLPGLEGFPGVKGDRGPAGPPGIAG 887
Query: 64 STSRVHCRAAEG-----GGLRPVPAVPLPGPAGRSGGPGAWSAQKHGG--HLSGRAGGTG 116
+ + G G PV + PGP G SG PG G + G+ G G
Sbjct: 888 MSGKPGAPGPPGVPGEPGERGPVGDIGFPGPEGPSGKPGINGKDGIPGAQGIMGKPGDRG 947
Query: 117 RKTEGLARAPGGAPG-HGLQG--GQP 139
K E R G PG G QG G+P
Sbjct: 948 PKGE---RGDQGIPGDRGSQGERGKP 970
Score = 30.4 bits (67), Expect = 0.99
Identities = 46/158 (29%), Positives = 52/158 (32%), Gaps = 35/158 (22%)
Query: 4 GVRSLVSTPASWSAAGPPDGAGRPAEHEATGGASSLHIKCM---EAASL--------LPR 52
G R P GPP G H+ GG + K EA L LP
Sbjct: 409 GRRGKTGPPGKPGPPGPPGPPGIQGIHQTLGGYYNKDNKGNDEHEAGGLKGDKGETGLPG 468
Query: 53 PPGKAPPGAAKSTSRVHCRAAEGG--------GLRPVPAVPL-PGPAGRSGGPGAWSAQK 103
PG P K E G G + V P PGP G G PG
Sbjct: 469 FPGSVGPKGQKGEPGEPFTKGEKGDRGEPGVIGSQGVKGEPGDPGPPGLIGSPG------ 522
Query: 104 HGGHLSGRAGGTGRKTEGLARAPG--GAPG-HGLQGGQ 138
L G+ G G + G PG G PG HG+ G Q
Sbjct: 523 ----LKGQQGSAG--SMGPRGPPGDVGLPGEHGIPGKQ 554
>gi|40805823 collagen, type XXII, alpha 1 [Homo sapiens]
Length = 1626
Score = 39.3 bits (90), Expect = 0.002
Identities = 39/140 (27%), Positives = 53/140 (37%), Gaps = 12/140 (8%)
Query: 2 HGGVRSLVSTPASWSAAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGKAPPGA 61
H G+ P GPP G+P G + S+ L +
Sbjct: 1424 HTGLMGPQGLPGENGPVGPPGPPGQPGFPGLRGESPSMETLRRLIQEELGKQLETRLAYL 1483
Query: 62 AKSTSRVHCRAAEGGGLRPVPAVP-----LPGPAGRSGGPGAWSAQKHGGHLSGRAGGTG 116
+ ++++G RP P P LPG AG G PG + G L G +G G
Sbjct: 1484 LAQMPPAYMKSSQG---RPGPPGPPGKDGLPGRAGPMGEPG----RPGQGGLEGPSGPIG 1536
Query: 117 RKTEGLARAPGGAPGHGLQG 136
K E A+ GAPG GL+G
Sbjct: 1537 PKGERGAKGDPGAPGVGLRG 1556
Score = 36.6 bits (83), Expect = 0.014
Identities = 41/133 (30%), Positives = 51/133 (38%), Gaps = 25/133 (18%)
Query: 19 GPP--DGA----GRPAEHEATGGASSLHIKCMEAASLLPRPPGKA-PPGAAKSTSRVHCR 71
GPP DG+ G P E G + ++ + LP PPG+ PG R
Sbjct: 539 GPPGRDGSKGMRGEPGELGEPGLPGEVGMRGPQGPPGLPGPPGRVGAPGLQGERGEKGTR 598
Query: 72 AAEGG-GLRPVPAVPLPGPAGRSGGPGAWSAQKHGGHLSGRAGGTGRKTEGLARAPGGAP 130
+G GL P P G G+ G PG SG AG G K + P G P
Sbjct: 599 GEKGERGLDGFPGKP--GDTGQQGRPGP----------SGVAGPQGEKGDVGPAGPPGVP 646
Query: 131 G-----HGLQGGQ 138
G GL+G Q
Sbjct: 647 GSVVQQEGLKGEQ 659
Score = 33.9 bits (76), Expect = 0.089
Identities = 37/130 (28%), Positives = 45/130 (34%), Gaps = 10/130 (7%)
Query: 19 GPPDGAGRPAEHEATGGASSLHIKCMEAASLLPR---PPGK-APPGAAKSTSRVHCRAAE 74
GPP AG G + K + +P PPG PPGA +
Sbjct: 1159 GPPGIAGPQGSQGERGADGEVGQKGDQGHPGVPGFMGPPGNPGPPGADGIAGAAGPPGIQ 1218
Query: 75 GGGLRPVPAVPLPGPAGRSGGPGAWSAQKHGGHLS-----GRAGGTGRKTEGLARAPGGA 129
G + P P GP+G G PG + G G+AG G AR P G
Sbjct: 1219 GSPGKEGPPGP-QGPSGLPGIPGEEGKEGRDGKPGPPGEPGKAGEPGLPGPEGARGPPGF 1277
Query: 130 PGHGLQGGQP 139
GH G P
Sbjct: 1278 KGHTGDSGAP 1287
Score = 33.5 bits (75), Expect = 0.12
Identities = 42/144 (29%), Positives = 52/144 (36%), Gaps = 13/144 (9%)
Query: 4 GVRSLVSTPASWSAAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPR-PPGKAPPGAA 62
G R S + G P +G P + + G S + L PR PPG+
Sbjct: 1321 GPRGPPGKNGSPGSPGEPGPSGTPGQKGSKGENGSPGLP----GFLGPRGPPGEPGEKGV 1376
Query: 63 KSTSRVHCRAAEGG--GLRPVPAVPLP-GPAGRSGGPGAWSAQKHGGHLSGRAGGTGRKT 119
V + E G G R P + GP G G PG H GH +G G G
Sbjct: 1377 PGKEGVPGKPGEPGFKGERGDPGIKGDKGPPGGKGQPGDPGIPGHKGH-TGLMGPQGLPG 1435
Query: 120 EGLARAPGGAPGH----GLQGGQP 139
E P G PG GL+G P
Sbjct: 1436 ENGPVGPPGPPGQPGFPGLRGESP 1459
Score = 33.1 bits (74), Expect = 0.15
Identities = 35/126 (27%), Positives = 42/126 (33%), Gaps = 6/126 (4%)
Query: 19 GPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGKAPPGAAKSTSRVHCRAAEGGGL 78
GPP G+ H A G A + A PPG + T E G
Sbjct: 898 GPPGAKGQEGAHGAPGAAGNPGAPGHVGAPGPSGPPGSVGAPGLRGTPGKDGERGEKGAA 957
Query: 79 RPVPAVPLPGPAGRSGGPGAWSAQKHGGHLSGRAGGTG-RKTEGLARAPGGAPGHGLQGG 137
+ PGP G G PGA G G+ G G R + GL G G G
Sbjct: 958 GEEGS---PGPVGPRGDPGAPGLPGPPG--KGKDGEPGLRGSPGLPGPLGTKAACGKVRG 1012
Query: 138 QPHCCL 143
+C L
Sbjct: 1013 SENCAL 1018
Score = 33.1 bits (74), Expect = 0.15
Identities = 40/131 (30%), Positives = 46/131 (35%), Gaps = 14/131 (10%)
Query: 17 AAGPPDGAGRPAEHEATG--GASSLH----IKCMEAASLLPRPPGKAPPGAAKSTSRVHC 70
AAGPP G P + G G S L + E P PPG+ PG A
Sbjct: 1211 AAGPPGIQGSPGKEGPPGPQGPSGLPGIPGEEGKEGRDGKPGPPGE--PGKAGEPGLPGP 1268
Query: 71 RAAEG--GGLRPVPAVPLPGPAGRSGGPGAWSAQKHGGHLSGRAGGTGRKTEGLARAPGG 128
A G G PGP G SG G + L G+ G TG + P G
Sbjct: 1269 EGARGPPGFKGHTGDSGAPGPRGESGAMGLPGQEG----LPGKDGDTGPTGPQGPQGPRG 1324
Query: 129 APGHGLQGGQP 139
PG G P
Sbjct: 1325 PPGKNGSPGSP 1335
Score = 32.7 bits (73), Expect = 0.20
Identities = 32/98 (32%), Positives = 41/98 (41%), Gaps = 12/98 (12%)
Query: 51 PRPPGKAP-PGAAK----STSRVHCRAAEGGGLRPVPAVPLPGPAGRSG--GP-GAWSAQ 102
P PP + P PG+ + T C A E G + + LPGP G G GP GA +
Sbjct: 454 PPPPQRPPTPGSEQIGFLKTINCSCPAGEKGEMGVAGPMGLPGPKGDIGAIGPVGAPGPK 513
Query: 103 KHGGHLSGRAGGTGRKTE----GLARAPGGAPGHGLQG 136
G + G G K E GL PG G++G
Sbjct: 514 GEKGDVGIGPFGQGEKGEKGSLGLPGPPGRDGSKGMRG 551
Score = 32.3 bits (72), Expect = 0.26
Identities = 43/131 (32%), Positives = 49/131 (37%), Gaps = 19/131 (14%)
Query: 17 AAGPPDGAGRPAEHEATGGASSLHIKCMEAASL-LPRPPGKAPPGAAKSTSRVHCRAAEG 75
A GP G E G + E SL LP PPG+ +K E
Sbjct: 503 AIGPVGAPGPKGEKGDVGIGPFGQGEKGEKGSLGLPGPPGR---DGSKGMRGEPGELGEP 559
Query: 76 G-----GLRPVPAVP-LPGPAGRSGGPGAWSAQKHGGHLSGRAGGTGRKTE-GLARAPGG 128
G G+R P LPGP GR G PG + G G G K E GL P G
Sbjct: 560 GLPGEVGMRGPQGPPGLPGPPGRVGAPGLQGER-------GEKGTRGEKGERGLDGFP-G 611
Query: 129 APGHGLQGGQP 139
PG Q G+P
Sbjct: 612 KPGDTGQQGRP 622
Score = 32.0 bits (71), Expect = 0.34
Identities = 44/142 (30%), Positives = 50/142 (35%), Gaps = 20/142 (14%)
Query: 4 GVRSLVSTPASWSAAGPPDGAGRPA---EHEATGGASSLHIKCMEAASLLPRPPGKA-PP 59
G + L P AG P G P E G L + ++ G A PP
Sbjct: 789 GEQGLAGRPGEKGEAGLPGAPGFPGVRGEKGDQGEKGELGLPGLKGDRGEKGEAGPAGPP 848
Query: 60 GAAKSTSRV--HCRAAEGGGLRPVPAVP-LPGPAGRSGGPGAWSAQKHGGHLSGRAGGTG 116
G +TS H R G + P LPG G G PG Q G G G
Sbjct: 849 GLPGTTSLFTPHPRMPGEQGPKGEKGDPGLPGEPGLQGRPGELGPQ-------GPTGPPG 901
Query: 117 RK-TEGLARAPG-----GAPGH 132
K EG APG GAPGH
Sbjct: 902 AKGQEGAHGAPGAAGNPGAPGH 923
Score = 31.2 bits (69), Expect = 0.58
Identities = 26/87 (29%), Positives = 29/87 (33%), Gaps = 7/87 (8%)
Query: 53 PPGKAPPGAAKSTSRVHCRAAEGGGLRPVPAVPLPGPAGRSGGPGAWSAQKHGGHLSGRA 112
P G P AK H G V PGP+G G GA L G
Sbjct: 893 PQGPTGPPGAKGQEGAHGAPGAAGNPGAPGHVGAPGPSGPPGSVGA-------PGLRGTP 945
Query: 113 GGTGRKTEGLARAPGGAPGHGLQGGQP 139
G G + E A G+PG G P
Sbjct: 946 GKDGERGEKGAAGEEGSPGPVGPRGDP 972
Score = 29.3 bits (64), Expect = 2.2
Identities = 18/46 (39%), Positives = 21/46 (45%), Gaps = 11/46 (23%)
Query: 53 PPGKAPPGAAKSTSRVHCRAAEGGGLRPVPAVPLP-GPAGRSGGPG 97
PPG + P K + G R +P P P GPAGR G PG
Sbjct: 1049 PPGPSGPPGDKGSP----------GSRGLPGFPGPQGPAGRDGAPG 1084
Score = 28.9 bits (63), Expect = 2.9
Identities = 32/96 (33%), Positives = 35/96 (36%), Gaps = 14/96 (14%)
Query: 51 PRPPG-KAPPGAAKSTSRVHCRAAEGGGLRPVPAVPL--------PGPAGRSGGPGAWSA 101
P PPG PPG S G P P P PGP G G PG
Sbjct: 716 PGPPGVPGPPGPGGSPGLPGEIGFPGKPGPPGPTGPPGKDGPNGPPGPPGTKGEPG---- 771
Query: 102 QKHGGHLSGRAGGTGRKTE-GLARAPGGAPGHGLQG 136
++ L G+ G G E GLA PG GL G
Sbjct: 772 ERGEDGLPGKPGLRGEIGEQGLAGRPGEKGEAGLPG 807
Score = 28.5 bits (62), Expect = 3.7
Identities = 41/135 (30%), Positives = 48/135 (35%), Gaps = 18/135 (13%)
Query: 19 GPPDGAGRPAEHEATG--GASSLHIKCMEAASLLPRPPGKAPPGAAKSTSRVHCRAAEGG 76
GPP G P E G G L + E L RP K G + R +G
Sbjct: 762 GPPGTKGEPGERGEDGLPGKPGLRGEIGEQG-LAGRPGEKGEAGLPGAPGFPGVRGEKGD 820
Query: 77 ----GLRPVPAVP-------LPGPAGRSGGPGAWSAQKHGGHLSGRAGGTGRKTE-GLAR 124
G +P + GPAG G PG S + G G G K + GL
Sbjct: 821 QGEKGELGLPGLKGDRGEKGEAGPAGPPGLPGTTSLFTPHPRMPGEQGPKGEKGDPGLPG 880
Query: 125 APG--GAPGH-GLQG 136
PG G PG G QG
Sbjct: 881 EPGLQGRPGELGPQG 895
Score = 28.1 bits (61), Expect = 4.9
Identities = 41/142 (28%), Positives = 49/142 (34%), Gaps = 17/142 (11%)
Query: 4 GVRSLVSTPASWSAAGPPDGAGRPAEHEATG--GASSL----HIKCMEAASLLPRPPGKA 57
G R L P AG G P E G G SSL I + PPG
Sbjct: 1063 GSRGLPGFPGPQGPAGRDGAPGNPGERGPPGKPGLSSLLSPGDINLLAKDVCNDCPPG-- 1120
Query: 58 PPGAA-----KSTSRVHCRAAEGG--GLRPVPAVP-LPGPAGRSGGPGAWSAQKHGGHLS 109
PPG K V + G G + P LPGP G +G G+ + G +
Sbjct: 1121 PPGLPGLPGFKGDKGVPGKPGREGTEGKKGEAGPPGLPGPPGIAGPQGSQGERGADGEV- 1179
Query: 110 GRAGGTGRKTEGLARAPGGAPG 131
G+ G G P G PG
Sbjct: 1180 GQKGDQGHPGVPGFMGPPGNPG 1201
Score = 27.3 bits (59), Expect = 8.4
Identities = 20/56 (35%), Positives = 23/56 (41%), Gaps = 2/56 (3%)
Query: 77 GLRPVPAVP-LPGPAGRSGGPGAWSAQKHGGHLSGRAGGTGRKTEGLARAPGGAPG 131
GL+ P P +PGP G G PG G G G TG + P G PG
Sbjct: 711 GLQGPPGPPGVPGPPGPGGSPGLPGEIGFPGK-PGPPGPTGPPGKDGPNGPPGPPG 765
>gi|122937269 Wilms tumor 1 interacting protein [Homo sapiens]
Length = 430
Score = 39.3 bits (90), Expect = 0.002
Identities = 32/97 (32%), Positives = 36/97 (37%), Gaps = 17/97 (17%)
Query: 2 HGGVRSLVSTPASWSAAGPPDGAGRPAEHEATGGASSLHIKCMEAASLLPRPPGKAPPGA 61
HG RS + P G G P+ A SSL + A PPG P A
Sbjct: 118 HGSPRS--------GRSDPRPGPGPPSVGSARSSVSSLGSRGSAGAYADFLPPGACPAPA 169
Query: 62 AKSTSRVHCRAAEGGGLRPVPAVPLPGPAGRSGGPGA 98
R+ E G P P LP P GR GGP A
Sbjct: 170 ---------RSPEPAGPAPFPLPALPLPPGREGGPSA 197
>gi|239748099 PREDICTED: hypothetical protein [Homo sapiens]
Length = 295
Score = 38.9 bits (89), Expect = 0.003
Identities = 33/89 (37%), Positives = 38/89 (42%), Gaps = 15/89 (16%)
Query: 51 PRPPGKAPPGAAKSTSRVHCRAAEGGGLRPVPA-VPLPGPAGRSGGPGAWSAQKHGGHLS 109
P P PG + RAA GGG R P VP PAG S GG+ S
Sbjct: 176 PTTPASRNPGLRAQERQSGRRAAGGGGARAEPPRVPPCRPAGCS-----------GGNRS 224
Query: 110 GRAGGTGRKT---EGLARAPGGAPGHGLQ 135
RA G G +T + R PG AP GL+
Sbjct: 225 RRAAGAGPRTTRRKPPPRPPGTAPAAGLR 253
Score = 27.3 bits (59), Expect = 8.4
Identities = 41/141 (29%), Positives = 48/141 (34%), Gaps = 21/141 (14%)
Query: 17 AAGPPDGAGRPAEHEATGGAS---SLHIKCMEAASLLPRPPG--KAPPGAAKSTSRVHCR 71
A+ A P+ A G SL + A+S L G P G KS
Sbjct: 23 ASSSSRSAAAPSSSSAQSGPELGLSLGPRLPSASSKLRVFTGYFSVPHGVGKSAGAA--- 79
Query: 72 AAEGGGLRPVPAVPLP------GP--AGRSGGPGAWSAQKHGGHLSGRAGGTGRKTEGLA 123
A E GG R P GP A R GG G W GG L R T + G +
Sbjct: 80 AGEEGGARLQATRTWPAGILEGGPQVAARGGGRG-WE----GGGLGARRAVTAARRGGAS 134
Query: 124 RAPGGAPGHGLQGGQPHCCLQ 144
R G P +P C Q
Sbjct: 135 RPLAGEPWREAARRRPQQCPQ 155
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.135 0.432
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,438,543
Number of Sequences: 37866
Number of extensions: 783698
Number of successful extensions: 7164
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 698
Number of HSP's that attempted gapping in prelim test: 4716
Number of HSP's gapped (non-prelim): 2355
length of query: 194
length of database: 18,247,518
effective HSP length: 97
effective length of query: 97
effective length of database: 14,574,516
effective search space: 1413728052
effective search space used: 1413728052
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.