Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: LOC100294380 Sequence: fasta or formatted (118aa) NCBI GI: 239751132
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            14.4         17           2
 C cysteine            1.7          2           1
 D aspartate           4.2          5           1
 E glutamate           4.2          5           1
 F phenylalanine       0.8          1           1
 G glycine            12.7         15           4
 H histidine           1.7          2           1
 I isoleucine          2.5          3           1
 K lysine              1.7          2           1
 L leucine             4.2          5           1
 M methionine          2.5          3           1
 N asparagine          0.0          0           0
 P proline             8.5         10           1
 Q glutamine           2.5          3           1
 R arginine           15.3         18           2
 S serine              5.1          6           2
 T threonine           6.8          8           2
 V valine              5.9          7           1
 W tryptophan          2.5          3           1
 Y tyrosine            2.5          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100287047          0.833   PREDICTED: hypothetical protein XP_002344159 
LOC100293104          0.833   PREDICTED: hypothetical protein 
LOC100287499          0.041   PREDICTED: hypothetical protein 
LOC100287499          0.041   PREDICTED: hypothetical protein XP_002343643 
FLJ37078              0.036   hypothetical protein LOC222183 
FOXQ1                 0.036   forkhead box Q1 
SFRS16                0.036   splicing factor, arginine/serine-rich 16 
FBL                   0.032   fibrillarin 
MAGI2                 0.032   membrane associated guanylate kinase, WW and PDZ dom...
MBD2                  0.032   methyl-CpG binding domain protein 2 testis-specific i...
MBD2                  0.032   methyl-CpG binding domain protein 2 isoform 1 
MRPL4                 0.032   mitochondrial ribosomal protein L4 isoform b 
MRPL4                 0.032   mitochondrial ribosomal protein L4 isoform a 
MRPL4                 0.032   mitochondrial ribosomal protein L4 isoform a 
FZD8                  0.032   frizzled 8 
LOC100127891          0.027   PREDICTED: hypothetical protein 
NKX1-1                0.027   PREDICTED: NK1 homeobox 1 
DONSON                0.027   downstream neighbor of SON 
LOC728767             0.023   PREDICTED: hypothetical protein 
LOC100289737          0.023   PREDICTED: hypothetical protein XP_002347183 
LOC728767             0.023   PREDICTED: hypothetical protein 
LOC100288678          0.023   PREDICTED: hypothetical protein XP_002343039 
LOC645321             0.023   PREDICTED: hypothetical protein 
LOC100292082          0.023   PREDICTED: hypothetical protein XP_002345881 
LOC100290023          0.023   PREDICTED: hypothetical protein XP_002348147 
LOC645321             0.023   PREDICTED: hypothetical protein 
LOC645321             0.023   PREDICTED: hypothetical protein 
LOC728650             0.023   PREDICTED: hypothetical protein 
SEMA6B                0.023   semaphorin 6B precursor 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press