Guide to the Human Genome
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Name: LOC100293104 Sequence: fasta or formatted (165aa) NCBI GI: 239756643
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            15.2         25           2
 C cysteine            3.0          5           1
 D aspartate           2.4          4           1
 E glutamate           3.6          6           1
 F phenylalanine       0.6          1           1
 G glycine            11.5         19           4
 H histidine           1.2          2           1
 I isoleucine          2.4          4           1
 K lysine              1.8          3           1
 L leucine             6.1         10           1
 M methionine          2.4          4           1
 N asparagine          0.0          0           0
 P proline            12.7         21           3
 Q glutamine           1.2          2           1
 R arginine           14.5         24           2
 S serine              6.7         11           2
 T threonine           3.6          6           1
 V valine              4.2          7           1
 W tryptophan          4.2          7           1
 Y tyrosine            2.4          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100287047          0.988   PREDICTED: hypothetical protein XP_002344159 
LOC100294380          0.561   PREDICTED: hypothetical protein 
MAGI2                 0.045   membrane associated guanylate kinase, WW and PDZ dom...
PDCD7                 0.045   programmed cell death 7 
FLJ37078              0.039   hypothetical protein LOC222183 
BAT2                  0.039   HLA-B associated transcript-2 
RBMXL2                0.036   testes-specific heterogenous nuclear ribonucleoprot...
LOC728650             0.036   PREDICTED: hypothetical protein 
LOC729989             0.033   PREDICTED: hypothetical protein 
LOC729506             0.033   PREDICTED: hypothetical protein 
LOC100287499          0.033   PREDICTED: hypothetical protein 
LOC729989             0.033   PREDICTED: hypothetical protein 
LOC729506             0.033   PREDICTED: hypothetical protein 
LOC100287499          0.033   PREDICTED: hypothetical protein XP_002343643 
LOC729989             0.033   PREDICTED: hypothetical protein 
LOC729506             0.033   PREDICTED: hypothetical protein 
C1orf229              0.033   hypothetical protein LOC388759 
INSM1                 0.033   insulinoma-associated 1 
LOC100293254          0.030   PREDICTED: hypothetical protein 
LOC100291914          0.030   PREDICTED: hypothetical protein XP_002345991 
LOC100289377          0.030   PREDICTED: hypothetical protein 
LOC100290611          0.030   PREDICTED: hypothetical protein XP_002346841 
LOC100289377          0.030   PREDICTED: hypothetical protein XP_002343119 
LOC100287467          0.030   PREDICTED: hypothetical protein XP_002342727 
LOC100127891          0.030   PREDICTED: hypothetical protein 
MARCH9                0.030   membrane-associated RING-CH protein IX 
PRR12                 0.030   proline rich 12 
LOC100128074          0.030   PREDICTED: hypothetical protein 
LOC100291634          0.027   PREDICTED: hypothetical protein XP_002346062 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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