Guide to the Human Genome
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Name: MRPL4 Sequence: fasta or formatted (263aa) NCBI GI: 22547140
Description:

mitochondrial ribosomal protein L4 isoform b

Referenced in:

Ribosomes

Other entries for this name:
alt prot [311aa] mitochondrial ribosomal protein L4 isoform a
alt prot [311aa] mitochondrial ribosomal protein L4 isoform a
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.5         25           2
 C cysteine            0.8          2           1
 D aspartate           3.4          9           2
 E glutamate           6.5         17           2
 F phenylalanine       1.9          5           1
 G glycine             8.0         21           3
 H histidine           3.0          8           1
 I isoleucine          2.3          6           1
 K lysine              4.2         11           1
 L leucine            11.0         29           2
 M methionine          2.7          7           1
 N asparagine          1.1          3           1
 P proline             7.6         20           1
 Q glutamine           4.9         13           1
 R arginine           10.6         28           2
 S serine              4.9         13           2
 T threonine           5.3         14           1
 V valine              7.6         20           1
 W tryptophan          2.3          6           1
 Y tyrosine            2.3          6           3
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   mitochondrial ribosomal protein L4 isoform b 
MRPL4                 0.935   mitochondrial ribosomal protein L4 isoform a 
MRPL4                 0.935   mitochondrial ribosomal protein L4 isoform a 
LOC100293104          0.016   PREDICTED: hypothetical protein 
LOC100287047          0.016   PREDICTED: hypothetical protein XP_002344159 
C9orf66               0.016   hypothetical protein LOC157983 
LOC100294380          0.014   PREDICTED: hypothetical protein 
CTBP2                 0.010   C-terminal binding protein 2 isoform 2 
GSK3A                 0.010   glycogen synthase kinase 3 alpha 
APC                   0.010   adenomatous polyposis coli 
APC                   0.010   adenomatous polyposis coli 
APC                   0.010   adenomatous polyposis coli 
BACH2                 0.010   BTB and CNC homology 1, basic leucine zipper transcr...
BRWD3                 0.008   bromodomain and WD repeat domain containing 3 [Homo...
GNAS                  0.008   GNAS complex locus alex 
SNRPA                 0.008   small nuclear ribonucleoprotein polypeptide A 
PRR12                 0.008   proline rich 12 
LOC100288108          0.006   PREDICTED: hypothetical protein 
LOC100288108          0.006   PREDICTED: hypothetical protein XP_002342919 
UBTF                  0.006   upstream binding transcription factor, RNA polymerase...
C15orf52              0.006   hypothetical protein LOC388115 
LAMC2                 0.006   laminin, gamma 2 isoform b precursor 
LAMC2                 0.006   laminin, gamma 2 isoform a precursor 
HUWE1                 0.006   HECT, UBA and WWE domain containing 1 
B3GAT2                0.006   beta-1,3-glucuronyltransferase 2 
PLB1                  0.006   phospholipase B1 
C7orf11               0.006   chromosome 7 open reading frame 11 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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