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Search of human proteins with 239751132
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239751132 PREDICTED: hypothetical protein [Homo sapiens]
(118 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239751132 PREDICTED: hypothetical protein [Homo sapiens] 247 1e-66
gi|239745624 PREDICTED: hypothetical protein XP_002344159 [Homo ... 210 2e-55
gi|239756643 PREDICTED: hypothetical protein [Homo sapiens] 210 2e-55
gi|239751535 PREDICTED: hypothetical protein [Homo sapiens] 34 0.028
gi|239746046 PREDICTED: hypothetical protein XP_002343643 [Homo ... 34 0.028
gi|158854042 hypothetical protein LOC222183 [Homo sapiens] 33 0.037
gi|145309320 forkhead box Q1 [Homo sapiens] 33 0.048
gi|133922600 splicing factor, arginine/serine-rich 16 [Homo sapi... 33 0.063
gi|12056465 fibrillarin [Homo sapiens] 32 0.082
gi|27436957 membrane associated guanylate kinase, WW and PDZ dom... 32 0.082
gi|7710145 methyl-CpG binding domain protein 2 testis-specific i... 32 0.082
gi|4505117 methyl-CpG binding domain protein 2 isoform 1 [Homo s... 32 0.082
gi|22547140 mitochondrial ribosomal protein L4 isoform b [Homo s... 32 0.082
gi|22547136 mitochondrial ribosomal protein L4 isoform a [Homo s... 32 0.082
gi|22547138 mitochondrial ribosomal protein L4 isoform a [Homo s... 32 0.082
gi|13994190 frizzled 8 [Homo sapiens] 32 0.14
gi|239754674 PREDICTED: hypothetical protein [Homo sapiens] 31 0.18
gi|239753784 PREDICTED: NK1 homeobox 1 [Homo sapiens] 31 0.18
gi|8922149 downstream neighbor of SON [Homo sapiens] 31 0.18
gi|239750574 PREDICTED: hypothetical protein [Homo sapiens] 30 0.31
gi|239749835 PREDICTED: hypothetical protein XP_002347183 [Homo ... 30 0.31
gi|169205732 PREDICTED: hypothetical protein [Homo sapiens] 30 0.31
gi|239744125 PREDICTED: hypothetical protein XP_002343039 [Homo ... 30 0.31
gi|169213067 PREDICTED: hypothetical protein [Homo sapiens] 30 0.41
gi|239754110 PREDICTED: hypothetical protein XP_002345881 [Homo ... 30 0.41
gi|239752201 PREDICTED: hypothetical protein XP_002348147 [Homo ... 30 0.41
gi|169213235 PREDICTED: hypothetical protein [Homo sapiens] 30 0.41
gi|169212744 PREDICTED: hypothetical protein [Homo sapiens] 30 0.41
gi|239744552 PREDICTED: hypothetical protein [Homo sapiens] 30 0.41
gi|19718780 semaphorin 6B precursor [Homo sapiens] 30 0.41
>gi|239751132 PREDICTED: hypothetical protein [Homo sapiens]
Length = 118
Score = 247 bits (631), Expect = 1e-66
Identities = 118/118 (100%), Positives = 118/118 (100%)
Query: 1 MVEPSYLKVTLWMTAEPSSRTRLYAARQASLSILVAIAAEPQRDTVRGGRARPWPAAGMG 60
MVEPSYLKVTLWMTAEPSSRTRLYAARQASLSILVAIAAEPQRDTVRGGRARPWPAAGMG
Sbjct: 1 MVEPSYLKVTLWMTAEPSSRTRLYAARQASLSILVAIAAEPQRDTVRGGRARPWPAAGMG 60
Query: 61 ARRVRAEGARAGGGGDGYAVPASCERGGGFHCGRRARGDPRPVDRHTDTPKPIWTTRQ 118
ARRVRAEGARAGGGGDGYAVPASCERGGGFHCGRRARGDPRPVDRHTDTPKPIWTTRQ
Sbjct: 61 ARRVRAEGARAGGGGDGYAVPASCERGGGFHCGRRARGDPRPVDRHTDTPKPIWTTRQ 118
>gi|239745624 PREDICTED: hypothetical protein XP_002344159 [Homo
sapiens]
Length = 165
Score = 210 bits (535), Expect = 2e-55
Identities = 104/118 (88%), Positives = 106/118 (89%), Gaps = 2/118 (1%)
Query: 1 MVEPSYLKVTLWMTAEPSSRTRLYAARQASLSILVAIAAEPQRDTVRGGRARPWPAAGMG 60
MVEPSYLKVTLWMTAEPSSRTRLYAARQASLSILVAIAAEPQRDTVRGGRARPWPAAGMG
Sbjct: 14 MVEPSYLKVTLWMTAEPSSRTRLYAARQASLSILVAIAAEPQRDTVRGGRARPWPAAGMG 73
Query: 61 ARRVRAEGARAGGGGDGYAVPASCERGGGFHCGRRARGDPRPVDRHTDTPKPIWTTRQ 118
ARRVRAEGARAGGGGDGYA PASCERGGGFHCGRRARGDPRP P+ W R+
Sbjct: 74 ARRVRAEGARAGGGGDGYAAPASCERGGGFHCGRRARGDPRPWP--APPPRAHWPPRR 129
>gi|239756643 PREDICTED: hypothetical protein [Homo sapiens]
Length = 165
Score = 210 bits (534), Expect = 2e-55
Identities = 101/102 (99%), Positives = 101/102 (99%)
Query: 1 MVEPSYLKVTLWMTAEPSSRTRLYAARQASLSILVAIAAEPQRDTVRGGRARPWPAAGMG 60
MVEPSYLKVTLWMTAEPSSRTRLYAARQASLSILVAIAAEPQRDTVRGGRARPWPAAGMG
Sbjct: 14 MVEPSYLKVTLWMTAEPSSRTRLYAARQASLSILVAIAAEPQRDTVRGGRARPWPAAGMG 73
Query: 61 ARRVRAEGARAGGGGDGYAVPASCERGGGFHCGRRARGDPRP 102
ARRVRAEGARAGGGGDGYA PASCERGGGFHCGRRARGDPRP
Sbjct: 74 ARRVRAEGARAGGGGDGYAAPASCERGGGFHCGRRARGDPRP 115
>gi|239751535 PREDICTED: hypothetical protein [Homo sapiens]
Length = 255
Score = 33.9 bits (76), Expect = 0.028
Identities = 25/64 (39%), Positives = 28/64 (43%), Gaps = 10/64 (15%)
Query: 41 PQRDTVRGGRARPWPAAGMGARRVRAEGARAGGGG---DGYAVPASCERGGGFHCGRRAR 97
P+ +RG + P P A R G RAGGGG G P RGGG C RA
Sbjct: 15 PRVQCIRGSQRVPQPPAARSPR-----GPRAGGGGGDAGGGGAPVRRARGGG--CWARAY 67
Query: 98 GDPR 101
D R
Sbjct: 68 QDAR 71
>gi|239746046 PREDICTED: hypothetical protein XP_002343643 [Homo
sapiens]
Length = 255
Score = 33.9 bits (76), Expect = 0.028
Identities = 25/64 (39%), Positives = 28/64 (43%), Gaps = 10/64 (15%)
Query: 41 PQRDTVRGGRARPWPAAGMGARRVRAEGARAGGGG---DGYAVPASCERGGGFHCGRRAR 97
P+ +RG + P P A R G RAGGGG G P RGGG C RA
Sbjct: 15 PRVQCIRGSQRVPQPPAARSPR-----GPRAGGGGGDAGGGGAPVRRARGGG--CWARAY 67
Query: 98 GDPR 101
D R
Sbjct: 68 QDAR 71
>gi|158854042 hypothetical protein LOC222183 [Homo sapiens]
Length = 653
Score = 33.5 bits (75), Expect = 0.037
Identities = 23/71 (32%), Positives = 30/71 (42%), Gaps = 6/71 (8%)
Query: 47 RGGRARPWPAAGMGARRVRAEGARAGGGGDGYAVPA-----SCERGGGFHCGRRARGDPR 101
R GR RP PA G+ R + + G G P ERG G H G+RA+ P
Sbjct: 405 RRGRRRPRPAPPRGSSRSLSRARSSSDSGSGRGAPGPGPEPGSERGHGGH-GKRAKERPP 463
Query: 102 PVDRHTDTPKP 112
+ +P P
Sbjct: 464 RARPASTSPSP 474
>gi|145309320 forkhead box Q1 [Homo sapiens]
Length = 403
Score = 33.1 bits (74), Expect = 0.048
Identities = 27/75 (36%), Positives = 34/75 (45%), Gaps = 22/75 (29%)
Query: 55 PAAGMGARRVRAEGARAGGGGDG--YAVPAS---------CERG------GGFHCGRRAR 97
PAAG GAR + +G ++ GGG G A+PA+ E G GG G AR
Sbjct: 51 PAAGGGARDTQGDGEQSAGGGPGAEEAIPAAAAAAVVAEGAEAGAAGPGAGGAGSGEGAR 110
Query: 98 GDPRPVDRHTDTPKP 112
P +T PKP
Sbjct: 111 SKP-----YTRRPKP 120
>gi|133922600 splicing factor, arginine/serine-rich 16 [Homo
sapiens]
Length = 674
Score = 32.7 bits (73), Expect = 0.063
Identities = 22/62 (35%), Positives = 30/62 (48%), Gaps = 5/62 (8%)
Query: 50 RARPWPAAGMGARRV---RAEGARAGGGG--DGYAVPASCERGGGFHCGRRARGDPRPVD 104
R+R W + +RR R+ G R GGG DG+ S R GG+ RR+R D
Sbjct: 418 RSRSWSRSRSRSRRYSRSRSRGRRHSGGGSRDGHRYSRSPARRGGYGPRRRSRSRSHSGD 477
Query: 105 RH 106
R+
Sbjct: 478 RY 479
>gi|12056465 fibrillarin [Homo sapiens]
Length = 321
Score = 32.3 bits (72), Expect = 0.082
Identities = 24/56 (42%), Positives = 24/56 (42%), Gaps = 10/56 (17%)
Query: 47 RGGRARPWPAAGMGARRVRAEGARA---GGGGDGYAVPASCERGGGFHC-GRRARG 98
RGGR G G R R G R GGGG G GGGFH G R RG
Sbjct: 24 RGGRG------GFGGGRGRGGGFRGRGRGGGGGGGGGGGGGRGGGGFHSGGNRGRG 73
>gi|27436957 membrane associated guanylate kinase, WW and PDZ domain
containing 2 [Homo sapiens]
Length = 1455
Score = 32.3 bits (72), Expect = 0.082
Identities = 32/93 (34%), Positives = 37/93 (39%), Gaps = 11/93 (11%)
Query: 17 PSSRTRLYAARQASLSILVAIAAEPQRDTVR-GGRARPWPAAGMGARRVRAEGAR---AG 72
P + R A R AS + +AA D R GG+ P AAG R GA AG
Sbjct: 1332 PGGQGRPEAGRPASEARAPGLAAADAADAARAGGKEAPRAAAGSELCRREGPGAAPAFAG 1391
Query: 73 GGGDGYAVPASCERGGGFHCGRRARGDPRPVDR 105
GG G + R G AR PRP R
Sbjct: 1392 PGGGGSGALEAEGRAG-------ARAGPRPGPR 1417
>gi|7710145 methyl-CpG binding domain protein 2 testis-specific
isoform [Homo sapiens]
Length = 302
Score = 32.3 bits (72), Expect = 0.082
Identities = 26/56 (46%), Positives = 28/56 (50%), Gaps = 9/56 (16%)
Query: 47 RGGRARPWPAAGMGARRVRAEGARAGGGGDGYAVPASCERGGGFHCGR-RARGDPR 101
+G P P +G VR EGAR GG G G A RGGG CGR R RG R
Sbjct: 37 QGSALAPSPVSG-----VRREGARGGGRGRGRWKQAG--RGGGV-CGRGRGRGRGR 84
>gi|4505117 methyl-CpG binding domain protein 2 isoform 1 [Homo
sapiens]
Length = 411
Score = 32.3 bits (72), Expect = 0.082
Identities = 26/56 (46%), Positives = 28/56 (50%), Gaps = 9/56 (16%)
Query: 47 RGGRARPWPAAGMGARRVRAEGARAGGGGDGYAVPASCERGGGFHCGR-RARGDPR 101
+G P P +G VR EGAR GG G G A RGGG CGR R RG R
Sbjct: 37 QGSALAPSPVSG-----VRREGARGGGRGRGRWKQAG--RGGGV-CGRGRGRGRGR 84
>gi|22547140 mitochondrial ribosomal protein L4 isoform b [Homo
sapiens]
Length = 263
Score = 32.3 bits (72), Expect = 0.082
Identities = 19/52 (36%), Positives = 24/52 (46%), Gaps = 3/52 (5%)
Query: 35 VAIAAEPQRDTVRGGRARPWPAAGMGARR---VRAEGARAGGGGDGYAVPAS 83
++ A R VRGG +PWP G G R +R+ R GG G P S
Sbjct: 109 ISYAKTKTRAEVRGGGRKPWPQKGTGRARHGSIRSPLWRGGGVAHGPRGPTS 160
>gi|22547136 mitochondrial ribosomal protein L4 isoform a [Homo
sapiens]
Length = 311
Score = 32.3 bits (72), Expect = 0.082
Identities = 19/52 (36%), Positives = 24/52 (46%), Gaps = 3/52 (5%)
Query: 35 VAIAAEPQRDTVRGGRARPWPAAGMGARR---VRAEGARAGGGGDGYAVPAS 83
++ A R VRGG +PWP G G R +R+ R GG G P S
Sbjct: 109 ISYAKTKTRAEVRGGGRKPWPQKGTGRARHGSIRSPLWRGGGVAHGPRGPTS 160
>gi|22547138 mitochondrial ribosomal protein L4 isoform a [Homo
sapiens]
Length = 311
Score = 32.3 bits (72), Expect = 0.082
Identities = 19/52 (36%), Positives = 24/52 (46%), Gaps = 3/52 (5%)
Query: 35 VAIAAEPQRDTVRGGRARPWPAAGMGARR---VRAEGARAGGGGDGYAVPAS 83
++ A R VRGG +PWP G G R +R+ R GG G P S
Sbjct: 109 ISYAKTKTRAEVRGGGRKPWPQKGTGRARHGSIRSPLWRGGGVAHGPRGPTS 160
>gi|13994190 frizzled 8 [Homo sapiens]
Length = 694
Score = 31.6 bits (70), Expect = 0.14
Identities = 16/30 (53%), Positives = 16/30 (53%)
Query: 60 GARRVRAEGARAGGGGDGYAVPASCERGGG 89
GAR G R GGGGD A PA GGG
Sbjct: 187 GARPPHRGGGRGGGGGDAAAPPARGGGGGG 216
Score = 26.6 bits (57), Expect = 4.5
Identities = 16/48 (33%), Positives = 20/48 (41%)
Query: 30 SLSILVAIAAEPQRDTVRGGRARPWPAAGMGARRVRAEGARAGGGGDG 77
S+ LV + A ++ GG A G G A A AG GG G
Sbjct: 324 SVGYLVRLVAGHEKVACSGGAPGAGGAGGAGGAAAGAGAAGAGAGGPG 371
>gi|239754674 PREDICTED: hypothetical protein [Homo sapiens]
Length = 480
Score = 31.2 bits (69), Expect = 0.18
Identities = 24/62 (38%), Positives = 29/62 (46%), Gaps = 8/62 (12%)
Query: 46 VRGGRARPWPAAGMGARRVRAEGARAGG-------GGDGYAVPASCERGGGFHCGRRARG 98
+R ARP PA G GA RA +RA G GG+ A P + GGG + G R
Sbjct: 235 LRSRAARPPPAPGPGALS-RASRSRAAGRPGPGFHGGEKAAAPRAPGGGGGRNPGALGRA 293
Query: 99 DP 100
P
Sbjct: 294 AP 295
>gi|239753784 PREDICTED: NK1 homeobox 1 [Homo sapiens]
Length = 814
Score = 31.2 bits (69), Expect = 0.18
Identities = 30/92 (32%), Positives = 38/92 (41%), Gaps = 9/92 (9%)
Query: 21 TRLYAARQASLSILVAIAAEPQRDTVRGGRARPWPAAGMGARRVRAE-GARAGGGGDGYA 79
+RL A + L + + A P VRG RP VR++ GARA GG
Sbjct: 322 SRLRTALGSGLRVCSSRPAAPSVCPVRGPPPRPGT--------VRSQLGARANEGGGAPR 373
Query: 80 VPASCERGGGFHCGRRARGDPRPVDRHTDTPK 111
PA G + GR RG + DR PK
Sbjct: 374 PPAGARVFGVWARGRLRRGCHKCADRAPRAPK 405
>gi|8922149 downstream neighbor of SON [Homo sapiens]
Length = 566
Score = 31.2 bits (69), Expect = 0.18
Identities = 25/85 (29%), Positives = 30/85 (35%), Gaps = 7/85 (8%)
Query: 38 AAEPQRDTVRGGRARPWPAAGMGARRVRAEGARAGGGGDGYAVPASCERGGGFHCGRRAR 97
AA P R+ R AG+ R A G R GG G G PA+ R R R
Sbjct: 32 AASPPRELTEPAARRAALVAGLPLRPFPAAGGRGGGSGGG---PAAARRNPFARLDNRPR 88
Query: 98 GDPRPVD----RHTDTPKPIWTTRQ 118
P D + P P + Q
Sbjct: 89 VAAEPPDGPAREQPEAPVPFLDSNQ 113
>gi|239750574 PREDICTED: hypothetical protein [Homo sapiens]
Length = 1297
Score = 30.4 bits (67), Expect = 0.31
Identities = 18/48 (37%), Positives = 22/48 (45%), Gaps = 4/48 (8%)
Query: 36 AIAAEPQRDTVRGGRARPWPAAGMGARRVRAEGARAGGGGDGYAVPAS 83
A+AA P+RD GGR G G R G GGG+G A+
Sbjct: 238 ALAAFPERDIFHGGRVVALGVVGEG----RGHGGDRRGGGEGLGTVAA 281
Score = 28.9 bits (63), Expect = 0.91
Identities = 18/45 (40%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Query: 55 PAAGMGARRVRAEGARAGGGGDGYAVPASCERGGGFHCGRRARGD 99
PA G+G +GA A G +PA + G G GR ARGD
Sbjct: 500 PATGVGGLVGAGQGAVAAAGNAPERLPAGVQ-GCGEEVGRGARGD 543
Score = 25.8 bits (55), Expect = 7.7
Identities = 21/55 (38%), Positives = 24/55 (43%), Gaps = 8/55 (14%)
Query: 48 GGRARPWPAAGMGARRVRAEGARAGGGGDGYAVPASCER-----GGGFHCGRRAR 97
GG A P AG +R+R RAG G A+ R GGG GRR R
Sbjct: 831 GGAAAGGPLAGAVVQRMRQRRVRAGRRRVGARAVAAAGRQGAGAGGG---GRRVR 882
>gi|239749835 PREDICTED: hypothetical protein XP_002347183 [Homo
sapiens]
Length = 321
Score = 30.4 bits (67), Expect = 0.31
Identities = 23/67 (34%), Positives = 28/67 (41%), Gaps = 6/67 (8%)
Query: 37 IAAEPQRDTVRGGRARPWPAAGMGARRVRAEGARAG------GGGDGYAVPASCERGGGF 90
++A P+ D RG R R P +GA V A +G G G G VP GGG
Sbjct: 25 LSAGPEWDRGRGVRRRCGPGVLLGASSVSWGLATSGHQGRGCGDGGGARVPTKSVPGGGP 84
Query: 91 HCGRRAR 97
R R
Sbjct: 85 RASRSVR 91
>gi|169205732 PREDICTED: hypothetical protein [Homo sapiens]
Length = 1297
Score = 30.4 bits (67), Expect = 0.31
Identities = 18/48 (37%), Positives = 22/48 (45%), Gaps = 4/48 (8%)
Query: 36 AIAAEPQRDTVRGGRARPWPAAGMGARRVRAEGARAGGGGDGYAVPAS 83
A+AA P+RD GGR G G R G GGG+G A+
Sbjct: 238 ALAAFPERDIFHGGRVVALGVVGEG----RGHGGDRRGGGEGLGTVAA 281
Score = 28.9 bits (63), Expect = 0.91
Identities = 18/45 (40%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Query: 55 PAAGMGARRVRAEGARAGGGGDGYAVPASCERGGGFHCGRRARGD 99
PA G+G +GA A G +PA + G G GR ARGD
Sbjct: 500 PATGVGGLVGAGQGAVAAAGNAPERLPAGVQ-GCGEEVGRGARGD 543
Score = 25.8 bits (55), Expect = 7.7
Identities = 21/55 (38%), Positives = 24/55 (43%), Gaps = 8/55 (14%)
Query: 48 GGRARPWPAAGMGARRVRAEGARAGGGGDGYAVPASCER-----GGGFHCGRRAR 97
GG A P AG +R+R RAG G A+ R GGG GRR R
Sbjct: 831 GGAAAGGPLAGAVVQRMRQRRVRAGRRRVGARAVAAAGRQGAGAGGG---GRRVR 882
>gi|239744125 PREDICTED: hypothetical protein XP_002343039 [Homo
sapiens]
Length = 321
Score = 30.4 bits (67), Expect = 0.31
Identities = 23/67 (34%), Positives = 28/67 (41%), Gaps = 6/67 (8%)
Query: 37 IAAEPQRDTVRGGRARPWPAAGMGARRVRAEGARAG------GGGDGYAVPASCERGGGF 90
++A P+ D RG R R P +GA V A +G G G G VP GGG
Sbjct: 25 LSAGPEWDRGRGVRRRCGPGVLLGASSVSWGLATSGHQGRGCGDGGGARVPTKSVPGGGP 84
Query: 91 HCGRRAR 97
R R
Sbjct: 85 RASRSVR 91
>gi|169213067 PREDICTED: hypothetical protein [Homo sapiens]
Length = 303
Score = 30.0 bits (66), Expect = 0.41
Identities = 21/51 (41%), Positives = 22/51 (43%), Gaps = 5/51 (9%)
Query: 39 AEPQRDTVRGGRARPWPAAGMGARRVRAEGARAGGGGDGYAVPASCERGGG 89
A P R G RP A RR RA G GGG G +PA C G G
Sbjct: 229 ASPSRSLGEAGGERPARAL----RRPRAPGRAGGGGPPGGGIPA-CSIGPG 274
>gi|239754110 PREDICTED: hypothetical protein XP_002345881 [Homo
sapiens]
Length = 284
Score = 30.0 bits (66), Expect = 0.41
Identities = 19/44 (43%), Positives = 21/44 (47%), Gaps = 7/44 (15%)
Query: 55 PAAGMGARRVRAEGARAGGGGDGYAVPASCERGGGFHCGRRARG 98
P AG GA R + + AGGGG G GGG RR RG
Sbjct: 157 PGAGGGAERGGSGRSSAGGGGGGGG-------GGGGRGSRRGRG 193
>gi|239752201 PREDICTED: hypothetical protein XP_002348147 [Homo
sapiens]
Length = 935
Score = 30.0 bits (66), Expect = 0.41
Identities = 21/48 (43%), Positives = 22/48 (45%), Gaps = 7/48 (14%)
Query: 50 RARPWPAAGMGARRVRAEGARAGGGGDGYAVPASCERGGGFHCGRRAR 97
RARPW G R RA GA G G G + ER G RRAR
Sbjct: 746 RARPWSPPAPGESRDRARGAGQPGPGSG----SGAERAGP---ERRAR 786
>gi|169213235 PREDICTED: hypothetical protein [Homo sapiens]
Length = 308
Score = 30.0 bits (66), Expect = 0.41
Identities = 21/51 (41%), Positives = 22/51 (43%), Gaps = 5/51 (9%)
Query: 39 AEPQRDTVRGGRARPWPAAGMGARRVRAEGARAGGGGDGYAVPASCERGGG 89
A P R G RP A RR RA G GGG G +PA C G G
Sbjct: 234 ASPSRSLGEAGGERPARAL----RRPRAPGRAGGGGPPGGGIPA-CSIGPG 279
>gi|169212744 PREDICTED: hypothetical protein [Homo sapiens]
Length = 308
Score = 30.0 bits (66), Expect = 0.41
Identities = 21/51 (41%), Positives = 22/51 (43%), Gaps = 5/51 (9%)
Query: 39 AEPQRDTVRGGRARPWPAAGMGARRVRAEGARAGGGGDGYAVPASCERGGG 89
A P R G RP A RR RA G GGG G +PA C G G
Sbjct: 234 ASPSRSLGEAGGERPARAL----RRPRAPGRAGGGGPPGGGIPA-CSIGPG 279
>gi|239744552 PREDICTED: hypothetical protein [Homo sapiens]
Length = 221
Score = 30.0 bits (66), Expect = 0.41
Identities = 26/68 (38%), Positives = 28/68 (41%), Gaps = 10/68 (14%)
Query: 49 GRARPWPAAGMGAR-----RVRAEGARAGGGGDGYAVPASCERGGGFHCGRRARGDPRPV 103
G AR A G G R RVRA ARA GG PA RG R ARG R
Sbjct: 32 GLARAGLATGKGQRPPGPGRVRAAQARARRGGGARERPAEGARG-----PRAARGGARAA 86
Query: 104 DRHTDTPK 111
+ P+
Sbjct: 87 PMPSSAPR 94
Score = 28.1 bits (61), Expect = 1.5
Identities = 21/57 (36%), Positives = 24/57 (42%), Gaps = 6/57 (10%)
Query: 47 RGGRARPWPAAGMGARRVRAEGARAGGGGDGYAVPASCERGGGFHCGRRARGDPRPV 103
RGG AR PA G R GARA +P+S RG RR RP+
Sbjct: 61 RGGGARERPAEGARGPRAARGGARAA------PMPSSAPRGPTEPALRRPSSAERPL 111
>gi|19718780 semaphorin 6B precursor [Homo sapiens]
Length = 888
Score = 30.0 bits (66), Expect = 0.41
Identities = 12/23 (52%), Positives = 14/23 (60%)
Query: 59 MGARRVRAEGARAGGGGDGYAVP 81
+G RR + G R GGGG G VP
Sbjct: 654 LGERRAQGPGGRGGGGGGGAGVP 676
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.134 0.430
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,529,189
Number of Sequences: 37866
Number of extensions: 299203
Number of successful extensions: 1825
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 137
Number of HSP's that attempted gapping in prelim test: 1588
Number of HSP's gapped (non-prelim): 332
length of query: 118
length of database: 18,247,518
effective HSP length: 88
effective length of query: 30
effective length of database: 14,915,310
effective search space: 447459300
effective search space used: 447459300
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.