Guide to the Human Genome
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Name: MRPL4 Sequence: fasta or formatted (311aa) NCBI GI: 22547136
Description:

mitochondrial ribosomal protein L4 isoform a

Referenced in:

Ribosomes

Other entries for this name:
alt mRNA [311aa] mitochondrial ribosomal protein L4 isoform a
alt prot [263aa] mitochondrial ribosomal protein L4 isoform b
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.7         27           2
 C cysteine            0.3          1           1
 D aspartate           3.9         12           2
 E glutamate           5.5         17           2
 F phenylalanine       2.6          8           1
 G glycine             7.1         22           3
 H histidine           3.9         12           1
 I isoleucine          1.9          6           1
 K lysine              4.2         13           1
 L leucine            12.5         39           2
 M methionine          2.3          7           1
 N asparagine          1.3          4           1
 P proline             9.0         28           1
 Q glutamine           4.5         14           1
 R arginine            8.4         26           2
 S serine              5.5         17           2
 T threonine           6.1         19           1
 V valine              7.1         22           1
 W tryptophan          2.3          7           1
 Y tyrosine            3.2         10           3
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   mitochondrial ribosomal protein L4 isoform a 
MRPL4                 1.000   mitochondrial ribosomal protein L4 isoform a 
MRPL4                 0.779   mitochondrial ribosomal protein L4 isoform b 
LOC100293104          0.013   PREDICTED: hypothetical protein 
LOC100287047          0.013   PREDICTED: hypothetical protein XP_002344159 
C9orf66               0.013   hypothetical protein LOC157983 
LOC100294380          0.011   PREDICTED: hypothetical protein 
CTBP2                 0.008   C-terminal binding protein 2 isoform 2 
GSK3A                 0.008   glycogen synthase kinase 3 alpha 
APC                   0.008   adenomatous polyposis coli 
APC                   0.008   adenomatous polyposis coli 
APC                   0.008   adenomatous polyposis coli 
BACH2                 0.008   BTB and CNC homology 1, basic leucine zipper transcr...
BRWD3                 0.007   bromodomain and WD repeat domain containing 3 [Homo...
GNAS                  0.007   GNAS complex locus alex 
SNRPA                 0.007   small nuclear ribonucleoprotein polypeptide A 
PRR12                 0.007   proline rich 12 
LOC100288108          0.005   PREDICTED: hypothetical protein 
LOC100288108          0.005   PREDICTED: hypothetical protein XP_002342919 
UBTF                  0.005   upstream binding transcription factor, RNA polymerase...
C15orf52              0.005   hypothetical protein LOC388115 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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