Guide to the Human Genome
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Name: LOC644334 Sequence: fasta or formatted (169aa) NCBI GI: 239749418
Description:

PREDICTED: similar to hCG2040198

Not currently referenced in the text

Other entries for this name:
alt mRNA {169aa} PREDICTED: similar to hCG2040198
alt mRNA {169aa} PREDICTED: similar to hCG2040198
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.1         12           2
 C cysteine            1.8          3           1
 D aspartate           7.1         12           1
 E glutamate           5.3          9           2
 F phenylalanine       3.6          6           2
 G glycine             5.9         10           2
 H histidine           5.3          9           1
 I isoleucine          4.7          8           2
 K lysine              4.1          7           2
 L leucine             9.5         16           2
 M methionine          5.3          9           1
 N asparagine          2.4          4           2
 P proline             5.9         10           3
 Q glutamine           4.7          8           1
 R arginine            5.9         10           2
 S serine              9.5         16           2
 T threonine           4.1          7           1
 V valine              4.7          8           1
 W tryptophan          0.0          0           0
 Y tyrosine            3.0          5           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to hCG2040198 
LOC644334             1.000   PREDICTED: similar to hCG2040198 
LOC644334             1.000   PREDICTED: similar to hCG2040198 
EPB41L5               0.453   erythrocyte membrane protein band 4.1 like 5 
EPB41L4B              0.222   erythrocyte membrane protein band 4.1 like 4B isofo...
EPB41L4B              0.222   erythrocyte membrane protein band 4.1 like 4B isofo...
EPB41L2               0.109   erythrocyte membrane protein band 4.1-like 2 isofor...
EPB41L2               0.109   erythrocyte membrane protein band 4.1-like 2 isofor...
EPB41L2               0.109   erythrocyte membrane protein band 4.1-like 2 isoform ...
FRMD5                 0.084   FERM domain containing 5 isoform 2 
EPB41L3               0.084   erythrocyte membrane protein band 4.1-like 3 
FARP1                 0.078   FERM, RhoGEF, and pleckstrin domain protein 1 isoform...
EPB41L1               0.069   erythrocyte membrane protein band 4.1-like 1 isoform...
EPB41L1               0.069   erythrocyte membrane protein band 4.1-like 1 isoform...
EPB41                 0.062   erythrocyte membrane protein band 4.1 (elliptocytosi...
EPB41                 0.062   erythrocyte membrane protein band 4.1 (elliptocytosis...
FRMD3                 0.056   FERM domain containing 3 
PTPN4                 0.050   protein tyrosine phosphatase, non-receptor type 4 [Ho...
PTPN3                 0.044   protein tyrosine phosphatase, non-receptor type 3 i...
PTPN3                 0.044   protein tyrosine phosphatase, non-receptor type 3 i...
EPB41L4A              0.041   erythrocyte protein band 4.1-like 4 
FARP2                 0.031   FERM, RhoGEF and pleckstrin domain protein 2 
PTPN14                0.031   protein tyrosine phosphatase, non-receptor type 14 [...
FRMD4B                0.031   FERM domain containing 4B 
FRMD4A                0.031   FERM domain containing 4A 
MYLIP                 0.028   myosin regulatory light chain interacting protein [H...
MAML2                 0.022   mastermind-like 2 
PTPN21                0.016   protein tyrosine phosphatase, non-receptor type 21 ...
FRMD7                 0.016   FERM domain containing 7 
CFB                   0.013   complement factor B preproprotein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
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