Guide to the Human Genome
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Name: LOC100290508 Sequence: fasta or formatted (221aa) NCBI GI: 239749194
Description:

PREDICTED: hypothetical protein XP_002346946

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.3         14           1
 C cysteine            3.2          7           1
 D aspartate           1.8          4           1
 E glutamate           6.3         14           2
 F phenylalanine      10.0         22           2
 G glycine             5.4         12           2
 H histidine           1.8          4           1
 I isoleucine          6.8         15           2
 K lysine              3.6          8           1
 L leucine            14.0         31           2
 M methionine          3.2          7           2
 N asparagine          2.3          5           1
 P proline             4.5         10           1
 Q glutamine           2.7          6           1
 R arginine            2.3          5           1
 S serine              7.7         17           2
 T threonine           5.4         12           2
 V valine              7.7         17           2
 W tryptophan          2.7          6           1
 Y tyrosine            2.3          5           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002346946 
LOC100294023          1.000   PREDICTED: hypothetical protein 
LOC100289187          1.000   PREDICTED: hypothetical protein XP_002342783 
LOC100289187          1.000   PREDICTED: hypothetical protein 
TMEM202               0.042   transmembrane protein 202 
TMEM225               0.040   transmembrane protein 225 
TMEM182               0.019   transmembrane protein 182 
GPR81                 0.016   G protein-coupled receptor 81 
TMBIM4                0.014   transmembrane BAX inhibitor motif containing 4 [Hom...
CLRN1                 0.012   clarin 1 isoform a 
CLRN1                 0.012   clarin 1 isoform c 
PRG-3                 0.012   plasticity related gene 3 
PRG-3                 0.012   plasticity related gene 3 
CLDN15                0.009   claudin 15 
CELSR2                0.007   cadherin EGF LAG seven-pass G-type receptor 2 
EMILIN2               0.007   elastin microfibril interfacer 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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