Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: PRG-3 Sequence: fasta or formatted (325aa) NCBI GI: 46877066
Description:

plasticity related gene 3

Referenced in:

Lipid Metabolism
Neurons

Other entries for this name:
alt mRNA [325aa] plasticity related gene 3
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.7         25           2
 C cysteine            4.0         13           2
 D aspartate           2.5          8           1
 E glutamate           4.9         16           3
 F phenylalanine       6.8         22           2
 G glycine             6.5         21           1
 H histidine           2.5          8           2
 I isoleucine          7.7         25           2
 K lysine              3.7         12           1
 L leucine             9.2         30           2
 M methionine          2.5          8           1
 N asparagine          3.7         12           2
 P proline             5.2         17           1
 Q glutamine           3.1         10           1
 R arginine            3.7         12           2
 S serine              6.8         22           2
 T threonine           9.2         30           1
 V valine              6.5         21           2
 W tryptophan          0.0          0           0
 Y tyrosine            4.0         13           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   plasticity related gene 3 
PRG-3                 1.000   plasticity related gene 3 
PAP2D                 0.558   phosphatidic acid phosphatase type 2d isoform 1 [Hom...
PAP2D                 0.552   phosphatidic acid phosphatase type 2d isoform 2 [Hom...
LPPR2                 0.424   lipid phosphate phosphatase-related protein type 2 [...
LPPR4                 0.285   plasticity related gene 1 
PRG2                  0.237   plasticity-related protein 2 
PPAP2B                0.169   phosphatidic acid phosphatase type 2B 
PPAP2B                0.169   phosphatidic acid phosphatase type 2B 
PPAP2A                0.145   phosphatidic acid phosphatase type 2A isoform 2 [Hom...
PPAP2A                0.129   phosphatidic acid phosphatase type 2A isoform 1 [Hom...
PPAP2C                0.106   phosphatidic acid phosphatase type 2C isoform 1 [Homo...
PPAP2C                0.106   phosphatidic acid phosphatase type 2C isoform 3 [Hom...
PPAP2C                0.101   phosphatidic acid phosphatase type 2C isoform 2 [Hom...
PPAPDC1B              0.054   phosphatidic acid phosphatase type 2 domain contain...
PPAPDC1A              0.044   phosphatidic acid phosphatase type 2 domain containi...
PPAPDC1B              0.039   phosphatidic acid phosphatase type 2 domain contain...
PPAPDC1B              0.024   phosphatidic acid phosphatase type 2 domain contain...
PPAPDC3               0.013   phosphatidic acid phosphatase type 2 domain contain...
SLC6A12               0.013   solute carrier family 6 (neurotransmitter transport...
SLC6A12               0.013   solute carrier family 6 (neurotransmitter transport...
SLC6A12               0.013   solute carrier family 6 (neurotransmitter transport...
PPAPDC2               0.009   phosphatidic acid phosphatase type 2 domain containi...
SLC6A13               0.009   solute carrier family 6 (neurotransmitter transporte...
MYH1                  0.009   myosin, heavy chain 1, skeletal muscle, adult [Homo...
MYH2                  0.009   myosin, heavy chain 2, skeletal muscle, adult [Homo...
MYH2                  0.009   myosin, heavy chain 2, skeletal muscle, adult [Homo...
MYH8                  0.009   myosin, heavy chain 8, skeletal muscle, perinatal [...
MYH4                  0.009   myosin, heavy polypeptide 4, skeletal muscle 
LOC100294023          0.008   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press