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Search of human proteins with 239748243
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239748243 PREDICTED: hypothetical protein XP_002346620 [Homo
sapiens]
(113 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239748243 PREDICTED: hypothetical protein XP_002346620 [Homo ... 218 6e-58
gi|239742144 PREDICTED: hypothetical protein XP_002342414 [Homo ... 218 6e-58
gi|239753730 PREDICTED: hypothetical protein [Homo sapiens] 216 3e-57
gi|239757430 PREDICTED: similar to lactation elevated 1 (predict... 45 1e-05
gi|239751946 PREDICTED: hypothetical protein XP_002348046 [Homo ... 45 2e-05
gi|239746429 PREDICTED: hypothetical protein XP_002344210 [Homo ... 45 2e-05
gi|19920317 cytoskeleton-associated protein 4 [Homo sapiens] 36 0.006
gi|55770834 centromere protein F [Homo sapiens] 35 0.013
gi|4758648 kinesin family member 5B [Homo sapiens] 32 0.083
gi|63252906 tropomyosin 1 alpha chain isoform 7 [Homo sapiens] 32 0.083
gi|63252900 tropomyosin 1 alpha chain isoform 4 [Homo sapiens] 32 0.083
gi|41872583 Rho-associated, coiled-coil containing protein kinas... 32 0.14
gi|22749217 coiled-coil domain containing 63 [Homo sapiens] 32 0.14
gi|10337581 type I hair keratin 3B [Homo sapiens] 31 0.19
gi|63252902 tropomyosin 1 alpha chain isoform 2 [Homo sapiens] 31 0.24
gi|63252896 tropomyosin 1 alpha chain isoform 3 [Homo sapiens] 31 0.24
gi|55749932 desmin [Homo sapiens] 30 0.32
gi|14917115 keratin 31 [Homo sapiens] 30 0.41
gi|32698688 citron [Homo sapiens] 30 0.41
gi|4885583 Rho-associated, coiled-coil containing protein kinase... 30 0.54
gi|239748549 PREDICTED: hypothetical protein LOC100129791 [Homo ... 30 0.54
gi|239742533 PREDICTED: hypothetical protein LOC100129791 [Homo ... 30 0.54
gi|118918407 spectrin repeat containing, nuclear envelope 2 isof... 30 0.54
gi|118918403 spectrin repeat containing, nuclear envelope 2 isof... 30 0.54
gi|62988334 cation channel, sperm associated 4 [Homo sapiens] 30 0.54
gi|19923442 transmembrane emp24 protein transport domain contain... 30 0.54
gi|89353283 serologically defined colon cancer antigen 3 isoform... 29 0.70
gi|89353281 serologically defined colon cancer antigen 3 isoform... 29 0.70
gi|89353278 serologically defined colon cancer antigen 3 isoform... 29 0.70
gi|14917117 keratin 33A [Homo sapiens] 29 0.92
>gi|239748243 PREDICTED: hypothetical protein XP_002346620 [Homo
sapiens]
Length = 113
Score = 218 bits (556), Expect = 6e-58
Identities = 113/113 (100%), Positives = 113/113 (100%)
Query: 1 MTSPNELNEAPGTNPAETEICNILDREFKIAVLRKLNEIQDNTEKELKVLSDKIIKEIEI 60
MTSPNELNEAPGTNPAETEICNILDREFKIAVLRKLNEIQDNTEKELKVLSDKIIKEIEI
Sbjct: 1 MTSPNELNEAPGTNPAETEICNILDREFKIAVLRKLNEIQDNTEKELKVLSDKIIKEIEI 60
Query: 61 IKMNQAEILELKNATDIRKNASGSLNKRLNLSEERISELGDSLFDNIQSEEAN 113
IKMNQAEILELKNATDIRKNASGSLNKRLNLSEERISELGDSLFDNIQSEEAN
Sbjct: 61 IKMNQAEILELKNATDIRKNASGSLNKRLNLSEERISELGDSLFDNIQSEEAN 113
>gi|239742144 PREDICTED: hypothetical protein XP_002342414 [Homo
sapiens]
Length = 113
Score = 218 bits (556), Expect = 6e-58
Identities = 113/113 (100%), Positives = 113/113 (100%)
Query: 1 MTSPNELNEAPGTNPAETEICNILDREFKIAVLRKLNEIQDNTEKELKVLSDKIIKEIEI 60
MTSPNELNEAPGTNPAETEICNILDREFKIAVLRKLNEIQDNTEKELKVLSDKIIKEIEI
Sbjct: 1 MTSPNELNEAPGTNPAETEICNILDREFKIAVLRKLNEIQDNTEKELKVLSDKIIKEIEI 60
Query: 61 IKMNQAEILELKNATDIRKNASGSLNKRLNLSEERISELGDSLFDNIQSEEAN 113
IKMNQAEILELKNATDIRKNASGSLNKRLNLSEERISELGDSLFDNIQSEEAN
Sbjct: 61 IKMNQAEILELKNATDIRKNASGSLNKRLNLSEERISELGDSLFDNIQSEEAN 113
>gi|239753730 PREDICTED: hypothetical protein [Homo sapiens]
Length = 113
Score = 216 bits (550), Expect = 3e-57
Identities = 112/113 (99%), Positives = 112/113 (99%)
Query: 1 MTSPNELNEAPGTNPAETEICNILDREFKIAVLRKLNEIQDNTEKELKVLSDKIIKEIEI 60
MT PNELNEAPGTNPAETEICNILDREFKIAVLRKLNEIQDNTEKELKVLSDKIIKEIEI
Sbjct: 1 MTLPNELNEAPGTNPAETEICNILDREFKIAVLRKLNEIQDNTEKELKVLSDKIIKEIEI 60
Query: 61 IKMNQAEILELKNATDIRKNASGSLNKRLNLSEERISELGDSLFDNIQSEEAN 113
IKMNQAEILELKNATDIRKNASGSLNKRLNLSEERISELGDSLFDNIQSEEAN
Sbjct: 61 IKMNQAEILELKNATDIRKNASGSLNKRLNLSEERISELGDSLFDNIQSEEAN 113
>gi|239757430 PREDICTED: similar to lactation elevated 1 (predicted)
[Homo sapiens]
Length = 132
Score = 45.1 bits (105), Expect = 1e-05
Identities = 35/108 (32%), Positives = 53/108 (49%), Gaps = 8/108 (7%)
Query: 4 PNELNEAPGTNPAET-----EICNILDREFKIAVLRKLNEIQDNTEKELKVLS---DKII 55
P + N +P T E+ I R + I KL E KE+K L DK++
Sbjct: 21 PKDHNSSPAREQDWTGNEFDELTEIGFRRWVITNSSKLKEHVLTQCKEVKNLEKRLDKLL 80
Query: 56 KEIEIIKMNQAEILELKNATDIRKNASGSLNKRLNLSEERISELGDSL 103
I ++ N +++ELKN + A S+N R++ +EERISE+ D L
Sbjct: 81 TGINSLEKNINDLMELKNTARELREAYTSINSRIDQAEERISEIEDQL 128
>gi|239751946 PREDICTED: hypothetical protein XP_002348046 [Homo
sapiens]
Length = 132
Score = 44.7 bits (104), Expect = 2e-05
Identities = 28/77 (36%), Positives = 45/77 (58%), Gaps = 5/77 (6%)
Query: 27 EFKIAVLRKLNEIQDNTEKELKVLSDKIIKEIEIIKMNQAEILELKNATDIRKNASGSLN 86
+ K VL + E++ N EK L DK++ I ++ N +++ELKN + A S+N
Sbjct: 57 KLKEHVLTQCKEVK-NLEKRL----DKLLTGINSLEKNINDLMELKNTARELREAYTSIN 111
Query: 87 KRLNLSEERISELGDSL 103
R++ +EERISE+ D L
Sbjct: 112 SRIDQAEERISEIEDQL 128
>gi|239746429 PREDICTED: hypothetical protein XP_002344210 [Homo
sapiens]
Length = 132
Score = 44.7 bits (104), Expect = 2e-05
Identities = 28/77 (36%), Positives = 45/77 (58%), Gaps = 5/77 (6%)
Query: 27 EFKIAVLRKLNEIQDNTEKELKVLSDKIIKEIEIIKMNQAEILELKNATDIRKNASGSLN 86
+ K VL + E++ N EK L DK++ I ++ N +++ELKN + A S+N
Sbjct: 57 KLKEHVLTQCKEVK-NLEKRL----DKLLTGINSLEKNINDLMELKNTARELREAYTSIN 111
Query: 87 KRLNLSEERISELGDSL 103
R++ +EERISE+ D L
Sbjct: 112 SRIDQAEERISEIEDQL 128
>gi|19920317 cytoskeleton-associated protein 4 [Homo sapiens]
Length = 602
Score = 36.2 bits (82), Expect = 0.006
Identities = 26/79 (32%), Positives = 42/79 (53%), Gaps = 2/79 (2%)
Query: 31 AVLRKLNEIQDNTEKELKVLSDKIIKEIEIIKMNQAEIL-ELKNATDIRKNA-SGSLNKR 88
++LR QD TEK +K ++ + E+++ Q EIL +L + + K+A
Sbjct: 174 SILRSSQHKQDLTEKAVKQGESEVSRISEVLQKLQNEILKDLSDGIHVVKDARERDFTSL 233
Query: 89 LNLSEERISELGDSLFDNI 107
N EER++EL S+ DNI
Sbjct: 234 ENTVEERLTELTKSINDNI 252
>gi|55770834 centromere protein F [Homo sapiens]
Length = 3114
Score = 35.0 bits (79), Expect = 0.013
Identities = 29/91 (31%), Positives = 46/91 (50%), Gaps = 18/91 (19%)
Query: 29 KIAVLRKLNEIQDNTEKELKVLSDKIIKE----IEIIKMNQAEILELKNATDIRKNASGS 84
+I L+K N + +++ KEL++LS+ + E II +N+ EI EL K + S
Sbjct: 926 EIQELKKSNHLLEDSLKELQLLSETLSLEKKEMSSIISLNKREIEELTQENGTLKEINAS 985
Query: 85 LN-KRLNL-------------SEERISELGD 101
LN +++NL E+ ISEL D
Sbjct: 986 LNQEKMNLIQKSESFANYIDEREKSISELSD 1016
Score = 30.8 bits (68), Expect = 0.24
Identities = 20/62 (32%), Positives = 37/62 (59%), Gaps = 10/62 (16%)
Query: 41 DNTEKELKVLSDKIIKEIEIIKMNQAEILELKNATDIRKNASGS---LNKRLNLSEERIS 97
+N EKEL++L+DK+ E QAEI ELK + + +++ L++ L+L ++ +S
Sbjct: 907 ENKEKELQLLNDKVETE-------QAEIQELKKSNHLLEDSLKELQLLSETLSLEKKEMS 959
Query: 98 EL 99
+
Sbjct: 960 SI 961
Score = 26.6 bits (57), Expect = 4.6
Identities = 20/80 (25%), Positives = 36/80 (45%), Gaps = 5/80 (6%)
Query: 24 LDREFKIAVLRKLNEIQDNTEKELKVLSDKIIKEIEIIKMNQAEILELKN-----ATDIR 78
++ E KI VL+ N +T + L+ + E+E+ KM++ +E N T+++
Sbjct: 2563 VELEQKIQVLQSKNASLQDTLEVLQSSYKNLENELELTKMDKMSFVEKVNKMTAKETELQ 2622
Query: 79 KNASGSLNKRLNLSEERISE 98
+ K L EE E
Sbjct: 2623 REMHEMAQKTAELQEELSGE 2642
>gi|4758648 kinesin family member 5B [Homo sapiens]
Length = 963
Score = 32.3 bits (72), Expect = 0.083
Identities = 28/104 (26%), Positives = 56/104 (53%), Gaps = 7/104 (6%)
Query: 6 ELNEAPGTNPA-ETEICNILDREFKIAVL--RKLNEIQDNTEKELKVLSDKIIKEIEIIK 62
ELN N A + E+ +L ++AV +K E++D T KE ++LSD++ ++ +
Sbjct: 473 ELNRLQAENDASKEEVKEVLQALEELAVNYDQKSQEVEDKT-KEYELLSDELNQKSATLA 531
Query: 63 MNQAEILELKNATDIRKNASGSLNKRLNLSEERISELGDSLFDN 106
AE+ +LK T+ +K + + L + ++E+G ++ +N
Sbjct: 532 SIDAELQKLKEMTNHQKKRAAEMMASL---LKDLAEIGIAVGNN 572
>gi|63252906 tropomyosin 1 alpha chain isoform 7 [Homo sapiens]
Length = 284
Score = 32.3 bits (72), Expect = 0.083
Identities = 27/81 (33%), Positives = 43/81 (53%), Gaps = 8/81 (9%)
Query: 19 EICNILDREFK--IAVLRKLNEIQDNTEKELKVLSDKIIKEIEIIKMNQAEILELKNATD 76
E I+D+ K +A K ++ +D E+E+KVLSDK +KE E +AE E ++ T
Sbjct: 195 EQLRIMDQTLKALMAAEDKYSQKEDRYEEEIKVLSDK-LKEAE----TRAEFAE-RSVTK 248
Query: 77 IRKNASGSLNKRLNLSEERIS 97
+ K+ K + EE +S
Sbjct: 249 LEKSIDDLEEKVAHAKEENLS 269
>gi|63252900 tropomyosin 1 alpha chain isoform 4 [Homo sapiens]
Length = 284
Score = 32.3 bits (72), Expect = 0.083
Identities = 27/81 (33%), Positives = 43/81 (53%), Gaps = 8/81 (9%)
Query: 19 EICNILDREFK--IAVLRKLNEIQDNTEKELKVLSDKIIKEIEIIKMNQAEILELKNATD 76
E I+D+ K +A K ++ +D E+E+KVLSDK +KE E +AE E ++ T
Sbjct: 195 EQLRIMDQTLKALMAAEDKYSQKEDRYEEEIKVLSDK-LKEAE----TRAEFAE-RSVTK 248
Query: 77 IRKNASGSLNKRLNLSEERIS 97
+ K+ K + EE +S
Sbjct: 249 LEKSIDDLEEKVAHAKEENLS 269
>gi|41872583 Rho-associated, coiled-coil containing protein kinase 2
[Homo sapiens]
Length = 1388
Score = 31.6 bits (70), Expect = 0.14
Identities = 21/79 (26%), Positives = 37/79 (46%), Gaps = 4/79 (5%)
Query: 17 ETEICNILDREFKIAVLRKLNEIQDNTEKELKVLSDKIIKEIEIIKMNQAEILELKNATD 76
+ ++ + D E A ++ E Q TE+ LK + + EI MN+ E ++ N TD
Sbjct: 1000 QEQLSRLKDEEISAAAIKAQFEKQLLTERTLKTQAVNKLAEI----MNRKEPVKRGNDTD 1055
Query: 77 IRKNASGSLNKRLNLSEER 95
+R+ + + L ER
Sbjct: 1056 VRRKEKENRKLHMELKSER 1074
>gi|22749217 coiled-coil domain containing 63 [Homo sapiens]
Length = 563
Score = 31.6 bits (70), Expect = 0.14
Identities = 21/76 (27%), Positives = 40/76 (52%), Gaps = 2/76 (2%)
Query: 29 KIAVLRKLNEIQ-DNTEKELKVLSDKIIKEIEIIKMNQAEILELKNATDIRKNASGSLNK 87
+I +LR ++ D+ L+ L DK+ K E M +++ E+ D+ KN+ L K
Sbjct: 360 EIILLRSQQKLSHDDNHSVLRQLEDKLRKTTEEADMYESKYGEVSKTLDLLKNSVEKLFK 419
Query: 88 RLNLSEERI-SELGDS 102
++N +I +LG++
Sbjct: 420 KINCDATKILVQLGET 435
>gi|10337581 type I hair keratin 3B [Homo sapiens]
Length = 404
Score = 31.2 bits (69), Expect = 0.19
Identities = 30/117 (25%), Positives = 55/117 (47%), Gaps = 12/117 (10%)
Query: 6 ELNEAPGTNPAETEICNILDREFKIAVLRKLNEIQDNTEKELKVLSDKIIKEIEIIKMNQ 65
E++ AP + ++ N +++ V E++ + + L+ +++ E ++ Q
Sbjct: 212 EVDAAPAVDL--NQVLNETRNQYEALVETNRREVEQWFATQTEELNKQVVSSSEQLQSYQ 269
Query: 66 AEILELK---NATDI----RKNASGSLNKRLNLSEERIS---ELGDSLFDNIQSEEA 112
AEI+EL+ NA +I + N SL L SE R S SL N++S+ A
Sbjct: 270 AEIIELRRTVNALEIELQAQHNLRYSLENTLTESEARYSSQLSQVQSLITNVESQLA 326
>gi|63252902 tropomyosin 1 alpha chain isoform 2 [Homo sapiens]
Length = 284
Score = 30.8 bits (68), Expect = 0.24
Identities = 23/67 (34%), Positives = 36/67 (53%), Gaps = 6/67 (8%)
Query: 31 AVLRKLNEIQDNTEKELKVLSDKIIKEIEIIKMNQAEILELKNATDIRKNASGSLNKRLN 90
A K ++ +D E+E+KVLSDK +KE E +AE E ++ T + K+ K +
Sbjct: 209 AQAEKYSQKEDRYEEEIKVLSDK-LKEAE----TRAEFAE-RSVTKLEKSIDDLEEKVAH 262
Query: 91 LSEERIS 97
EE +S
Sbjct: 263 AKEENLS 269
>gi|63252896 tropomyosin 1 alpha chain isoform 3 [Homo sapiens]
Length = 284
Score = 30.8 bits (68), Expect = 0.24
Identities = 23/67 (34%), Positives = 36/67 (53%), Gaps = 6/67 (8%)
Query: 31 AVLRKLNEIQDNTEKELKVLSDKIIKEIEIIKMNQAEILELKNATDIRKNASGSLNKRLN 90
A K ++ +D E+E+KVLSDK +KE E +AE E ++ T + K+ K +
Sbjct: 209 AQAEKYSQKEDRYEEEIKVLSDK-LKEAE----TRAEFAE-RSVTKLEKSIDDLEEKVAH 262
Query: 91 LSEERIS 97
EE +S
Sbjct: 263 AKEENLS 269
>gi|55749932 desmin [Homo sapiens]
Length = 470
Score = 30.4 bits (67), Expect = 0.32
Identities = 24/103 (23%), Positives = 46/103 (44%), Gaps = 10/103 (9%)
Query: 6 ELNEAPGTNPAETEICNILDREFKIAVLRKLNEIQDNTEKELKVLSDKIIKEIEIIKMNQ 65
E+N G P T + + + E + LR+ E+ N + V D ++ +++ +K
Sbjct: 139 EVNRLKGREP--TRVAELYEEELR--ELRRQVEVLTNQRARVDVERDNLLDDLQRLKAKL 194
Query: 66 AEILELK-----NATDIRKNASGSLNKRLNLSEERISELGDSL 103
E ++LK N R + + R++L E RI L + +
Sbjct: 195 QEEIQLKEEAENNLAAFRADVDAATLARIDL-ERRIESLNEEI 236
>gi|14917115 keratin 31 [Homo sapiens]
Length = 416
Score = 30.0 bits (66), Expect = 0.41
Identities = 27/103 (26%), Positives = 48/103 (46%), Gaps = 10/103 (9%)
Query: 20 ICNILDREFKIAVLRKLNEIQDNTEKELKVLSDKIIKEIEIIKMNQAEILELK---NATD 76
+ N +++ V E++ + + L+ +++ E ++ QAEI+EL+ NA +
Sbjct: 224 VLNETRSQYEALVETNRREVEQWFTTQTEELNKQVVSSSEQLQSYQAEIIELRRTVNALE 283
Query: 77 I----RKNASGSLNKRLNLSEERIS---ELGDSLFDNIQSEEA 112
I + N SL L SE R S SL N++S+ A
Sbjct: 284 IELQAQHNLRDSLENTLTESEARYSSQLSQVQSLITNVESQLA 326
>gi|32698688 citron [Homo sapiens]
Length = 2027
Score = 30.0 bits (66), Expect = 0.41
Identities = 23/68 (33%), Positives = 42/68 (61%), Gaps = 6/68 (8%)
Query: 33 LRKLNEIQDNTEKELKVLSDKIIKE----IEI-IKMNQAEILELKNATDIRKNASGSLNK 87
+R+L + D TEK+ + +D+ I E +E+ +K ++AEIL L+ A +K + SL+
Sbjct: 1061 VRELQRMLD-TEKQSRARADQRITESRQVVELAVKEHKAEILALQQALKEQKLKAESLSD 1119
Query: 88 RLNLSEER 95
+LN E++
Sbjct: 1120 KLNDLEKK 1127
Score = 27.7 bits (60), Expect = 2.0
Identities = 26/95 (27%), Positives = 44/95 (46%), Gaps = 9/95 (9%)
Query: 19 EICNILDREFK--IAVLRKLNEIQDNTEKEL----KVLSDK--IIKEIEI-IKMNQAEIL 69
E +LD + K +A L + E+E K+LS++ +I ++ I+ + I+
Sbjct: 723 EKIKVLDNQIKKDLADKETLENMMQRHEEEAHEKGKILSEQKAMINAMDSKIRSLEQRIV 782
Query: 70 ELKNATDIRKNASGSLNKRLNLSEERISELGDSLF 104
EL A + N+S + + EE ISEL F
Sbjct: 783 ELSEANKLAANSSLFTQRNMKAQEEMISELRQQKF 817
>gi|4885583 Rho-associated, coiled-coil containing protein kinase 1
[Homo sapiens]
Length = 1354
Score = 29.6 bits (65), Expect = 0.54
Identities = 29/90 (32%), Positives = 43/90 (47%), Gaps = 13/90 (14%)
Query: 24 LDREFKIAVLRKLNEI--QDNTEKELKVLSDKIIKEIEIIKMNQAEILE-LKNATDIRKN 80
L +E K A R EI +D+T L+ + + K+IEI++ E+ E +K A + K
Sbjct: 916 LTQESKKAASRNRQEITDKDHTVSRLEEANSMLTKDIEILRRENEELTEKMKKAEEEYK- 974
Query: 81 ASGSLNKRLNLSEERISELGDSLFDNIQSE 110
L K EE IS L + NI +E
Sbjct: 975 ----LEK-----EEEISNLKAAFEKNINTE 995
>gi|239748549 PREDICTED: hypothetical protein LOC100129791 [Homo
sapiens]
Length = 338
Score = 29.6 bits (65), Expect = 0.54
Identities = 28/109 (25%), Positives = 49/109 (44%), Gaps = 13/109 (11%)
Query: 4 PNELNEAPGTNPA--ETEICNILDREFKIAVLRKLNE-IQ------DNTEKELKVLSDKI 54
P E + +P T + E + + + F+ + +L E IQ +N EK L+ +I
Sbjct: 21 PKECSSSPATEQSWMENDFDELREAGFRRSNYSELREDIQTKGKKVENFEKNLEECITRI 80
Query: 55 IKEIEIIKMNQAEILELKNATDIRKNASGSLNKRLNLSEERISELGDSL 103
+ +K E++ELK + SL R + EER+S + D +
Sbjct: 81 TNTEKCLK----ELMELKTKARELREECRSLRSRCDQLEERVSAMEDEM 125
>gi|239742533 PREDICTED: hypothetical protein LOC100129791 [Homo
sapiens]
Length = 338
Score = 29.6 bits (65), Expect = 0.54
Identities = 28/109 (25%), Positives = 49/109 (44%), Gaps = 13/109 (11%)
Query: 4 PNELNEAPGTNPA--ETEICNILDREFKIAVLRKLNE-IQ------DNTEKELKVLSDKI 54
P E + +P T + E + + + F+ + +L E IQ +N EK L+ +I
Sbjct: 21 PKECSSSPATEQSWMENDFDELREAGFRRSNYSELREDIQTKGKKVENFEKNLEECITRI 80
Query: 55 IKEIEIIKMNQAEILELKNATDIRKNASGSLNKRLNLSEERISELGDSL 103
+ +K E++ELK + SL R + EER+S + D +
Sbjct: 81 TNTEKCLK----ELMELKTKARELREECRSLRSRCDQLEERVSAMEDEM 125
>gi|118918407 spectrin repeat containing, nuclear envelope 2 isoform 5
[Homo sapiens]
Length = 6907
Score = 29.6 bits (65), Expect = 0.54
Identities = 29/111 (26%), Positives = 54/111 (48%), Gaps = 11/111 (9%)
Query: 9 EAPGTNPAETEI-CNILDREFKIA------VLRKLNEIQ--DNTEKELKVLSDKIIKEI- 58
+AP ++P + IL + + A +++KLNE + D++ KE ++L K+ E
Sbjct: 3071 KAPDSSPESRRLNAQILSQRIEKAKCLCDEIIKKLNENKTFDDSFKEKEILQIKLNAEEN 3130
Query: 59 -EIIKMNQAEILELKNATDIRKNASGSLNKRLNLSEERISELGDSLFDNIQ 108
++ K+ Q +LEL KN L L++ + S+L L N++
Sbjct: 3131 DKLYKVLQNMVLELSPKELDEKNCQDKLETSLHVLNQIKSQLQQPLLINLE 3181
>gi|118918403 spectrin repeat containing, nuclear envelope 2 isoform 1
[Homo sapiens]
Length = 6885
Score = 29.6 bits (65), Expect = 0.54
Identities = 29/111 (26%), Positives = 54/111 (48%), Gaps = 11/111 (9%)
Query: 9 EAPGTNPAETEI-CNILDREFKIA------VLRKLNEIQ--DNTEKELKVLSDKIIKEI- 58
+AP ++P + IL + + A +++KLNE + D++ KE ++L K+ E
Sbjct: 3071 KAPDSSPESRRLNAQILSQRIEKAKCLCDEIIKKLNENKTFDDSFKEKEILQIKLNAEEN 3130
Query: 59 -EIIKMNQAEILELKNATDIRKNASGSLNKRLNLSEERISELGDSLFDNIQ 108
++ K+ Q +LEL KN L L++ + S+L L N++
Sbjct: 3131 DKLYKVLQNMVLELSPKELDEKNCQDKLETSLHVLNQIKSQLQQPLLINLE 3181
>gi|62988334 cation channel, sperm associated 4 [Homo sapiens]
Length = 472
Score = 29.6 bits (65), Expect = 0.54
Identities = 22/80 (27%), Positives = 40/80 (50%), Gaps = 5/80 (6%)
Query: 36 LNEIQDNTE--KELKVLSDKIIKEIEIIKMNQAEILELKNATDIRKNASGSLNKRLNLSE 93
L IQ+N KE++ + I++E+ I+ NQ + E+ N R + SGSL +
Sbjct: 381 LEAIQENLRQYKEIRDELNMIVEEVRAIRFNQEQESEVLNR---RSSTSGSLETTSSKDI 437
Query: 94 ERISELGDSLFDNIQSEEAN 113
++S+ D L + E+ +
Sbjct: 438 RQMSQQQDLLSALVSMEKVH 457
>gi|19923442 transmembrane emp24 protein transport domain containing
5 [Homo sapiens]
Length = 229
Score = 29.6 bits (65), Expect = 0.54
Identities = 28/109 (25%), Positives = 48/109 (44%), Gaps = 7/109 (6%)
Query: 6 ELNEAPGTNPAETEICNIL---DREFKIAVLRKL--NEIQDNTEKELKVLSD--KIIKEI 58
E ++ G + ETE+ + + D F + + I DN ++ + D K I
Sbjct: 87 EQRKSDGVHTVETEVGDYMFCFDNTFSTISEKVIFFELILDNMGEQAQEQEDWKKYITGT 146
Query: 59 EIIKMNQAEILELKNATDIRKNASGSLNKRLNLSEERISELGDSLFDNI 107
+I+ M +ILE N+ R + SG + L E R + +S FD +
Sbjct: 147 DILDMKLEDILESINSIKSRLSKSGHIQILLRAFEARDRNIQESNFDRV 195
>gi|89353283 serologically defined colon cancer antigen 3 isoform 3
[Homo sapiens]
Length = 362
Score = 29.3 bits (64), Expect = 0.70
Identities = 15/67 (22%), Positives = 37/67 (55%), Gaps = 7/67 (10%)
Query: 6 ELNEAPGTNPAETEICNILDREFKIAVLRK------LNEIQDNTEKELKVLSDKIIK-EI 58
+LNE + A+TE+ L+R+ + ++++ L + E+ L++++ + +K E
Sbjct: 211 KLNEVQSFSEAQTEMVRTLERKLEAKMIKEESDYHDLESVVQQVEQNLELMTKRAVKAEN 270
Query: 59 EIIKMNQ 65
++K+ Q
Sbjct: 271 HVVKLKQ 277
>gi|89353281 serologically defined colon cancer antigen 3 isoform 1
[Homo sapiens]
Length = 435
Score = 29.3 bits (64), Expect = 0.70
Identities = 15/67 (22%), Positives = 37/67 (55%), Gaps = 7/67 (10%)
Query: 6 ELNEAPGTNPAETEICNILDREFKIAVLRK------LNEIQDNTEKELKVLSDKIIK-EI 58
+LNE + A+TE+ L+R+ + ++++ L + E+ L++++ + +K E
Sbjct: 284 KLNEVQSFSEAQTEMVRTLERKLEAKMIKEESDYHDLESVVQQVEQNLELMTKRAVKAEN 343
Query: 59 EIIKMNQ 65
++K+ Q
Sbjct: 344 HVVKLKQ 350
>gi|89353278 serologically defined colon cancer antigen 3 isoform 2
[Homo sapiens]
Length = 412
Score = 29.3 bits (64), Expect = 0.70
Identities = 15/67 (22%), Positives = 37/67 (55%), Gaps = 7/67 (10%)
Query: 6 ELNEAPGTNPAETEICNILDREFKIAVLRK------LNEIQDNTEKELKVLSDKIIK-EI 58
+LNE + A+TE+ L+R+ + ++++ L + E+ L++++ + +K E
Sbjct: 261 KLNEVQSFSEAQTEMVRTLERKLEAKMIKEESDYHDLESVVQQVEQNLELMTKRAVKAEN 320
Query: 59 EIIKMNQ 65
++K+ Q
Sbjct: 321 HVVKLKQ 327
>gi|14917117 keratin 33A [Homo sapiens]
Length = 404
Score = 28.9 bits (63), Expect = 0.92
Identities = 26/104 (25%), Positives = 48/104 (46%), Gaps = 10/104 (9%)
Query: 19 EICNILDREFKIAVLRKLNEIQDNTEKELKVLSDKIIKEIEIIKMNQAEILELK---NAT 75
++ N +++ V E++ + + L+ +++ E ++ QAEI+EL+ NA
Sbjct: 223 QVLNETRSQYEALVETNRREVEQWFATQTEELNKQVVSSSEQLQSYQAEIIELRRTVNAL 282
Query: 76 DI----RKNASGSLNKRLNLSEERIS---ELGDSLFDNIQSEEA 112
+I + N SL L SE R S L N++S+ A
Sbjct: 283 EIELQAQHNLRDSLENTLTESEARYSSQLSQVQRLITNVESQLA 326
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.307 0.128 0.325
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,646,361
Number of Sequences: 37866
Number of extensions: 126396
Number of successful extensions: 456
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 71
Number of HSP's that attempted gapping in prelim test: 414
Number of HSP's gapped (non-prelim): 113
length of query: 113
length of database: 18,247,518
effective HSP length: 83
effective length of query: 30
effective length of database: 15,104,640
effective search space: 453139200
effective search space used: 453139200
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (22.0 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.