Guide to the Human Genome
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Name: LOC100291103 Sequence: fasta or formatted (132aa) NCBI GI: 239751946
Description:

PREDICTED: hypothetical protein XP_002348046

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.5          6           1
 C cysteine            1.5          2           1
 D aspartate           5.3          7           1
 E glutamate          12.9         17           2
 F phenylalanine       1.5          2           1
 G glycine             2.3          3           1
 H histidine           1.5          2           1
 I isoleucine          6.1          8           1
 K lysine             10.6         14           2
 L leucine             9.1         12           2
 M methionine          1.5          2           1
 N asparagine         10.6         14           1
 P proline             2.3          3           2
 Q glutamine           4.5          6           1
 R arginine            6.8          9           2
 S serine              8.3         11           2
 T threonine           5.3          7           1
 V valine              3.0          4           1
 W tryptophan          1.5          2           1
 Y tyrosine            0.8          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002348046 
LOC100288854          1.000   PREDICTED: hypothetical protein XP_002344210 
LOC100291649          0.996   PREDICTED: similar to lactation elevated 1 (predict...
LOC100129791          0.461   PREDICTED: hypothetical protein LOC100129791 
LOC100129791          0.461   PREDICTED: hypothetical protein LOC100129791 
LOC100129791          0.452   PREDICTED: hypothetical protein LOC100129791 
LOC100293213          0.083   PREDICTED: hypothetical protein 
LOC100291254          0.083   PREDICTED: hypothetical protein XP_002346620 
LOC100289216          0.083   PREDICTED: hypothetical protein XP_002342414 
KRT34                 0.071   keratin 34 
KRT33B                0.071   type I hair keratin 3B 
KRT31                 0.071   keratin 31 
KRT33A                0.066   keratin 33A 
LAMB4                 0.058   laminin, beta 4 
GOLGA1                0.050   golgin 97 
GOLGA8B               0.050   golgi autoantigen, golgin subfamily a, 8B 
GOLGA8A               0.050   golgi autoantigen, golgin subfamily a, 8A 
L1TD1                 0.050   LINE-1 type transposase domain containing 1 
CCDC18                0.041   sarcoma antigen NY-SAR-41 
EEA1                  0.041   early endosome antigen 1, 162kD 
DNAH10                0.041   dynein, axonemal, heavy chain 10 
CDK5RAP2              0.041   CDK5 regulatory subunit associated protein 2 isoform...
KRT39                 0.037   type I hair keratin KA35 
LUZP1                 0.037   leucine zipper protein 1 
LUZP1                 0.037   leucine zipper protein 1 
ERC2                  0.037   cytomatrix protein p110 
KRT32                 0.033   keratin 32 
LOC100133220          0.033   PREDICTED: hypothetical protein 
STX19                 0.033   syntaxin 19 
MYH7                  0.033   myosin, heavy chain 7, cardiac muscle, beta 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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