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Search of human proteins with 239744878
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239744878 PREDICTED: hypothetical protein LOC283486 [Homo
sapiens]
(123 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239750579 PREDICTED: hypothetical protein LOC283486 [Homo sap... 271 1e-73
gi|239744878 PREDICTED: hypothetical protein LOC283486 [Homo sap... 271 1e-73
gi|239756033 PREDICTED: hypothetical protein LOC283486 [Homo sap... 269 3e-73
gi|239757232 PREDICTED: hypothetical protein [Homo sapiens] 33 0.042
gi|239751740 PREDICTED: hypothetical protein [Homo sapiens] 33 0.042
gi|239746241 PREDICTED: hypothetical protein XP_002343712 [Homo ... 33 0.042
gi|13994236 cat eye syndrome chromosome region, candidate 6 isof... 32 0.12
gi|239753839 PREDICTED: hypothetical protein [Homo sapiens] 32 0.12
gi|239747201 PREDICTED: hypothetical protein [Homo sapiens] 32 0.12
gi|239757609 PREDICTED: hypothetical protein [Homo sapiens] 31 0.21
gi|239752116 PREDICTED: hypothetical protein XP_002348117 [Homo ... 31 0.21
gi|239746618 PREDICTED: hypothetical protein XP_002344233 [Homo ... 31 0.21
gi|4505777 PHD finger protein 1 isoform a [Homo sapiens] 31 0.21
gi|71044479 death inducer-obliterator 1 isoform c [Homo sapiens] 31 0.21
gi|38150007 small nuclear ribonucleoprotein polypeptide B/B' iso... 30 0.35
gi|4507125 small nuclear ribonucleoprotein polypeptide B/B' isof... 30 0.35
gi|13027650 small nuclear ribonucleoprotein polypeptide N [Homo ... 30 0.46
gi|13027648 small nuclear ribonucleoprotein polypeptide N [Homo ... 30 0.46
gi|13027646 small nuclear ribonucleoprotein polypeptide N [Homo ... 30 0.46
gi|13027644 small nuclear ribonucleoprotein polypeptide N [Homo ... 30 0.46
gi|4507135 small nuclear ribonucleoprotein polypeptide N [Homo s... 30 0.46
gi|7705708 hypothetical protein LOC51066 [Homo sapiens] 30 0.60
gi|239748594 PREDICTED: hypothetical protein XP_002346735 [Homo ... 29 0.79
gi|153792074 proline rich 12 [Homo sapiens] 29 0.79
gi|31317307 proprotein convertase subtilisin/kexin type 9 prepro... 29 1.0
gi|239751471 PREDICTED: hypothetical protein XP_002347846 [Homo ... 29 1.0
gi|122937233 discs, large (Drosophila) homolog-associated protei... 28 1.3
gi|56237021 fibrillin 3 precursor [Homo sapiens] 28 1.3
gi|32189362 PTPRF interacting protein alpha 3 [Homo sapiens] 28 1.8
gi|47271475 SPOC domain containing 1 [Homo sapiens] 28 1.8
>gi|239750579 PREDICTED: hypothetical protein LOC283486 [Homo
sapiens]
Length = 123
Score = 271 bits (692), Expect = 1e-73
Identities = 123/123 (100%), Positives = 123/123 (100%)
Query: 1 MPVCGGRCLRAGPAPAPAWQKAPESRGLCPEEVSSCVKGPGRGRWASLGFAEGPGTHTAG 60
MPVCGGRCLRAGPAPAPAWQKAPESRGLCPEEVSSCVKGPGRGRWASLGFAEGPGTHTAG
Sbjct: 1 MPVCGGRCLRAGPAPAPAWQKAPESRGLCPEEVSSCVKGPGRGRWASLGFAEGPGTHTAG 60
Query: 61 LAVEGRARGVSARSWHCHACSGPGTRECVGQAVGRQGARLRPWLQPTWASIPSSTALELC 120
LAVEGRARGVSARSWHCHACSGPGTRECVGQAVGRQGARLRPWLQPTWASIPSSTALELC
Sbjct: 61 LAVEGRARGVSARSWHCHACSGPGTRECVGQAVGRQGARLRPWLQPTWASIPSSTALELC 120
Query: 121 GHG 123
GHG
Sbjct: 121 GHG 123
>gi|239744878 PREDICTED: hypothetical protein LOC283486 [Homo
sapiens]
Length = 123
Score = 271 bits (692), Expect = 1e-73
Identities = 123/123 (100%), Positives = 123/123 (100%)
Query: 1 MPVCGGRCLRAGPAPAPAWQKAPESRGLCPEEVSSCVKGPGRGRWASLGFAEGPGTHTAG 60
MPVCGGRCLRAGPAPAPAWQKAPESRGLCPEEVSSCVKGPGRGRWASLGFAEGPGTHTAG
Sbjct: 1 MPVCGGRCLRAGPAPAPAWQKAPESRGLCPEEVSSCVKGPGRGRWASLGFAEGPGTHTAG 60
Query: 61 LAVEGRARGVSARSWHCHACSGPGTRECVGQAVGRQGARLRPWLQPTWASIPSSTALELC 120
LAVEGRARGVSARSWHCHACSGPGTRECVGQAVGRQGARLRPWLQPTWASIPSSTALELC
Sbjct: 61 LAVEGRARGVSARSWHCHACSGPGTRECVGQAVGRQGARLRPWLQPTWASIPSSTALELC 120
Query: 121 GHG 123
GHG
Sbjct: 121 GHG 123
>gi|239756033 PREDICTED: hypothetical protein LOC283486 [Homo
sapiens]
Length = 123
Score = 269 bits (688), Expect = 3e-73
Identities = 122/123 (99%), Positives = 122/123 (99%)
Query: 1 MPVCGGRCLRAGPAPAPAWQKAPESRGLCPEEVSSCVKGPGRGRWASLGFAEGPGTHTAG 60
MPVCGGRCLRAGPAPAPAWQKAPESRGLCPEEVSSCVKGPGRGRW SLGFAEGPGTHTAG
Sbjct: 1 MPVCGGRCLRAGPAPAPAWQKAPESRGLCPEEVSSCVKGPGRGRWVSLGFAEGPGTHTAG 60
Query: 61 LAVEGRARGVSARSWHCHACSGPGTRECVGQAVGRQGARLRPWLQPTWASIPSSTALELC 120
LAVEGRARGVSARSWHCHACSGPGTRECVGQAVGRQGARLRPWLQPTWASIPSSTALELC
Sbjct: 61 LAVEGRARGVSARSWHCHACSGPGTRECVGQAVGRQGARLRPWLQPTWASIPSSTALELC 120
Query: 121 GHG 123
GHG
Sbjct: 121 GHG 123
>gi|239757232 PREDICTED: hypothetical protein [Homo sapiens]
Length = 461
Score = 33.5 bits (75), Expect = 0.042
Identities = 29/81 (35%), Positives = 35/81 (43%), Gaps = 18/81 (22%)
Query: 12 GPAPAPAWQKAPESRGLCPEEVSSCVKGPGRGRWASLGFAEGPGTHTAGLAVEG--RARG 69
GP P P Q + E GL + S CV+ A LG A+ PG L G RARG
Sbjct: 370 GPQPLP--QVSKEGSGLARPDPSCCVR-------AGLGAAKTPGAQGERLGPRGTRRARG 420
Query: 70 V-------SARSWHCHACSGP 83
+ +R ACSGP
Sbjct: 421 LQLRPVGGQSRREAAPACSGP 441
>gi|239751740 PREDICTED: hypothetical protein [Homo sapiens]
Length = 461
Score = 33.5 bits (75), Expect = 0.042
Identities = 29/81 (35%), Positives = 35/81 (43%), Gaps = 18/81 (22%)
Query: 12 GPAPAPAWQKAPESRGLCPEEVSSCVKGPGRGRWASLGFAEGPGTHTAGLAVEG--RARG 69
GP P P Q + E GL + S CV+ A LG A+ PG L G RARG
Sbjct: 370 GPQPLP--QVSKEGSGLARPDPSCCVR-------AGLGAAKTPGAQGERLGPRGTRRARG 420
Query: 70 V-------SARSWHCHACSGP 83
+ +R ACSGP
Sbjct: 421 LQLRPVGGQSRREAAPACSGP 441
>gi|239746241 PREDICTED: hypothetical protein XP_002343712 [Homo
sapiens]
Length = 461
Score = 33.5 bits (75), Expect = 0.042
Identities = 29/81 (35%), Positives = 35/81 (43%), Gaps = 18/81 (22%)
Query: 12 GPAPAPAWQKAPESRGLCPEEVSSCVKGPGRGRWASLGFAEGPGTHTAGLAVEG--RARG 69
GP P P Q + E GL + S CV+ A LG A+ PG L G RARG
Sbjct: 370 GPQPLP--QVSKEGSGLARPDPSCCVR-------AGLGAAKTPGAQGERLGPRGTRRARG 420
Query: 70 V-------SARSWHCHACSGP 83
+ +R ACSGP
Sbjct: 421 LQLRPVGGQSRREAAPACSGP 441
>gi|13994236 cat eye syndrome chromosome region, candidate 6 isoform
a [Homo sapiens]
Length = 578
Score = 32.0 bits (71), Expect = 0.12
Identities = 27/89 (30%), Positives = 32/89 (35%), Gaps = 7/89 (7%)
Query: 11 AGPAPAPAWQKAPESRGLCPEEVSSCVKGPGRGRWASLGFAEGPGTHTAGLAVEGRARGV 70
AGPAP A S S + G A+ G GPG+ +AG G G
Sbjct: 106 AGPAPVAFSSSAATSSSTSTPTSSCSMTAADFGGGAAAGAVGGPGSRSAG-GAGGTGTGS 164
Query: 71 SARSWHCHACSGPGTRECVGQAVGRQGAR 99
A C C G R GR+G R
Sbjct: 165 GASCCPCCCCCGCPDRP------GRRGRR 187
>gi|239753839 PREDICTED: hypothetical protein [Homo sapiens]
Length = 257
Score = 32.0 bits (71), Expect = 0.12
Identities = 33/108 (30%), Positives = 45/108 (41%), Gaps = 10/108 (9%)
Query: 13 PAPAPAW---QKAPESRGLCPEEVSSCVKGPGRGRWASLGFAEGPGTHTAGLAVEGRARG 69
PA + AW +A + G + PGRGR A+ + PGT A RA G
Sbjct: 78 PARSAAWGPPARASRAAGRRAGPAGPPCRAPGRGRAAATRRSPAPGTARGSPAGVERAGG 137
Query: 70 VSARSWHCHACSGPGTR---ECVGQAVGRQGARLRPWLQPTWASIPSS 114
+A S S P R C G ++G LR +P A++P S
Sbjct: 138 ATAAS-SAGTRSVPARRLPPPCGGTSLGAGSRALR---RPGSAALPRS 181
>gi|239747201 PREDICTED: hypothetical protein [Homo sapiens]
Length = 101
Score = 32.0 bits (71), Expect = 0.12
Identities = 27/74 (36%), Positives = 33/74 (44%), Gaps = 13/74 (17%)
Query: 7 RCLRAGP-APAPAWQKAPES----RGLCPEEVSSCVKGPGRGRWASLGFAEGPG-THTAG 60
RC AG A A + +K P + P +SSC+ GP G E P THT+
Sbjct: 31 RCFSAGAEAAADSSRKLPRPVLTMNTVTPRSLSSCMGGP-------TGSLEPPSVTHTST 83
Query: 61 LAVEGRARGVSARS 74
L GRA SA S
Sbjct: 84 LGTPGRAPDASANS 97
>gi|239757609 PREDICTED: hypothetical protein [Homo sapiens]
Length = 571
Score = 31.2 bits (69), Expect = 0.21
Identities = 35/119 (29%), Positives = 48/119 (40%), Gaps = 7/119 (5%)
Query: 2 PVCGGRCLRAGPAPAPAWQKAPESRGLCPEEVSSCVKG-PGRGRWASLGFAEGPGTHTAG 60
P RCL G AP+ +AP L + + S V G P ASLG +G AG
Sbjct: 258 PQAHARCLETGGKGAPSLPRAPLPSTLACQHLHSFVHGFPMLVLQASLGQVDG---EHAG 314
Query: 61 LAVEGRARGVSARSWHCHACSGPGTRECVGQAVGRQGARL-RPWLQPTWASIPSSTALE 118
E + + C A +G G E G+ GR G+ + W PS T ++
Sbjct: 315 HPHEPCYTSID--EFGCDARTGGGQGEERGRGRGRLGSGCSQEWAGAQTVGNPSPTGVQ 371
>gi|239752116 PREDICTED: hypothetical protein XP_002348117 [Homo
sapiens]
Length = 571
Score = 31.2 bits (69), Expect = 0.21
Identities = 35/119 (29%), Positives = 48/119 (40%), Gaps = 7/119 (5%)
Query: 2 PVCGGRCLRAGPAPAPAWQKAPESRGLCPEEVSSCVKG-PGRGRWASLGFAEGPGTHTAG 60
P RCL G AP+ +AP L + + S V G P ASLG +G AG
Sbjct: 258 PQAHARCLETGGKGAPSLPRAPLPSTLACQHLHSFVHGFPMLVLQASLGQVDG---EHAG 314
Query: 61 LAVEGRARGVSARSWHCHACSGPGTRECVGQAVGRQGARL-RPWLQPTWASIPSSTALE 118
E + + C A +G G E G+ GR G+ + W PS T ++
Sbjct: 315 HPHEPCYTSID--EFGCDARTGGGQGEERGRGRGRLGSGCSQEWAGAQTVGNPSPTGVQ 371
>gi|239746618 PREDICTED: hypothetical protein XP_002344233 [Homo
sapiens]
Length = 571
Score = 31.2 bits (69), Expect = 0.21
Identities = 35/119 (29%), Positives = 48/119 (40%), Gaps = 7/119 (5%)
Query: 2 PVCGGRCLRAGPAPAPAWQKAPESRGLCPEEVSSCVKG-PGRGRWASLGFAEGPGTHTAG 60
P RCL G AP+ +AP L + + S V G P ASLG +G AG
Sbjct: 258 PQAHARCLETGGKGAPSLPRAPLPSTLACQHLHSFVHGFPMLVLQASLGQVDG---EHAG 314
Query: 61 LAVEGRARGVSARSWHCHACSGPGTRECVGQAVGRQGARL-RPWLQPTWASIPSSTALE 118
E + + C A +G G E G+ GR G+ + W PS T ++
Sbjct: 315 HPHEPCYTSID--EFGCDARTGGGQGEERGRGRGRLGSGCSQEWAGAQTVGNPSPTGVQ 371
>gi|4505777 PHD finger protein 1 isoform a [Homo sapiens]
Length = 457
Score = 31.2 bits (69), Expect = 0.21
Identities = 24/74 (32%), Positives = 30/74 (40%), Gaps = 6/74 (8%)
Query: 2 PVCGGRCLRAGP----APAPAWQKAPESRGLCPEEVSSCVKGPGRGRWASLGFAEGPGTH 57
P G RAGP +P +APE+ PEE + G +S A PG
Sbjct: 342 PTGDGALTRAGPWGRGLTSPG--EAPEAGARAPEEEAEGESGGAGATLSSAQSARAPGAE 399
Query: 58 TAGLAVEGRARGVS 71
AG + EG A S
Sbjct: 400 GAGSSAEGTAAAPS 413
>gi|71044479 death inducer-obliterator 1 isoform c [Homo sapiens]
Length = 2240
Score = 31.2 bits (69), Expect = 0.21
Identities = 23/67 (34%), Positives = 27/67 (40%), Gaps = 3/67 (4%)
Query: 5 GGRCLRAGPAPAPAWQKAPESRGLCPEEVSSCVKGPGR---GRWASLGFAEGPGTHTAGL 61
G R L P+ P +K P +SS G G G+WAS F EG G
Sbjct: 2022 GPRPLLELPSHPPQHRKDRWEEAGPPSALSSSAPGQGPEADGQWASADFREGKGHEYRNQ 2081
Query: 62 AVEGRAR 68
EGR R
Sbjct: 2082 TFEGRQR 2088
>gi|38150007 small nuclear ribonucleoprotein polypeptide B/B'
isoform B' [Homo sapiens]
Length = 240
Score = 30.4 bits (67), Expect = 0.35
Identities = 19/63 (30%), Positives = 24/63 (38%)
Query: 23 PESRGLCPEEVSSCVKGPGRGRWASLGFAEGPGTHTAGLAVEGRARGVSARSWHCHACSG 82
P+ G+ ++ GPG GR A G G A + G RGV S G
Sbjct: 87 PKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPMPQAPAGLAGPVRGVGGPSQQVMTPQG 146
Query: 83 PGT 85
GT
Sbjct: 147 RGT 149
>gi|4507125 small nuclear ribonucleoprotein polypeptide B/B' isoform
B [Homo sapiens]
Length = 231
Score = 30.4 bits (67), Expect = 0.35
Identities = 19/63 (30%), Positives = 24/63 (38%)
Query: 23 PESRGLCPEEVSSCVKGPGRGRWASLGFAEGPGTHTAGLAVEGRARGVSARSWHCHACSG 82
P+ G+ ++ GPG GR A G G A + G RGV S G
Sbjct: 87 PKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPMPQAPAGLAGPVRGVGGPSQQVMTPQG 146
Query: 83 PGT 85
GT
Sbjct: 147 RGT 149
>gi|13027650 small nuclear ribonucleoprotein polypeptide N [Homo
sapiens]
Length = 240
Score = 30.0 bits (66), Expect = 0.46
Identities = 19/63 (30%), Positives = 24/63 (38%)
Query: 23 PESRGLCPEEVSSCVKGPGRGRWASLGFAEGPGTHTAGLAVEGRARGVSARSWHCHACSG 82
P+ G+ ++ GPG GR A G G A + G RGV S G
Sbjct: 87 PKDTGIARVPLAGAAGGPGVGRAAGRGVPAGVPIPQAPAGLAGPVRGVGGPSQQVMTPQG 146
Query: 83 PGT 85
GT
Sbjct: 147 RGT 149
>gi|13027648 small nuclear ribonucleoprotein polypeptide N [Homo
sapiens]
Length = 240
Score = 30.0 bits (66), Expect = 0.46
Identities = 19/63 (30%), Positives = 24/63 (38%)
Query: 23 PESRGLCPEEVSSCVKGPGRGRWASLGFAEGPGTHTAGLAVEGRARGVSARSWHCHACSG 82
P+ G+ ++ GPG GR A G G A + G RGV S G
Sbjct: 87 PKDTGIARVPLAGAAGGPGVGRAAGRGVPAGVPIPQAPAGLAGPVRGVGGPSQQVMTPQG 146
Query: 83 PGT 85
GT
Sbjct: 147 RGT 149
>gi|13027646 small nuclear ribonucleoprotein polypeptide N [Homo
sapiens]
Length = 240
Score = 30.0 bits (66), Expect = 0.46
Identities = 19/63 (30%), Positives = 24/63 (38%)
Query: 23 PESRGLCPEEVSSCVKGPGRGRWASLGFAEGPGTHTAGLAVEGRARGVSARSWHCHACSG 82
P+ G+ ++ GPG GR A G G A + G RGV S G
Sbjct: 87 PKDTGIARVPLAGAAGGPGVGRAAGRGVPAGVPIPQAPAGLAGPVRGVGGPSQQVMTPQG 146
Query: 83 PGT 85
GT
Sbjct: 147 RGT 149
>gi|13027644 small nuclear ribonucleoprotein polypeptide N [Homo
sapiens]
Length = 240
Score = 30.0 bits (66), Expect = 0.46
Identities = 19/63 (30%), Positives = 24/63 (38%)
Query: 23 PESRGLCPEEVSSCVKGPGRGRWASLGFAEGPGTHTAGLAVEGRARGVSARSWHCHACSG 82
P+ G+ ++ GPG GR A G G A + G RGV S G
Sbjct: 87 PKDTGIARVPLAGAAGGPGVGRAAGRGVPAGVPIPQAPAGLAGPVRGVGGPSQQVMTPQG 146
Query: 83 PGT 85
GT
Sbjct: 147 RGT 149
>gi|4507135 small nuclear ribonucleoprotein polypeptide N [Homo
sapiens]
Length = 240
Score = 30.0 bits (66), Expect = 0.46
Identities = 19/63 (30%), Positives = 24/63 (38%)
Query: 23 PESRGLCPEEVSSCVKGPGRGRWASLGFAEGPGTHTAGLAVEGRARGVSARSWHCHACSG 82
P+ G+ ++ GPG GR A G G A + G RGV S G
Sbjct: 87 PKDTGIARVPLAGAAGGPGVGRAAGRGVPAGVPIPQAPAGLAGPVRGVGGPSQQVMTPQG 146
Query: 83 PGT 85
GT
Sbjct: 147 RGT 149
>gi|7705708 hypothetical protein LOC51066 [Homo sapiens]
Length = 353
Score = 29.6 bits (65), Expect = 0.60
Identities = 18/56 (32%), Positives = 23/56 (41%), Gaps = 3/56 (5%)
Query: 33 VSSCVKGPGRGRWASLGFAEGPGTHTAGLAVEGRARGVSARSWHCHACSGPGTREC 88
V C K GRGR+ G G GT + + +R C C+G G R C
Sbjct: 152 VKECHKCHGRGRYKCSG-CHGAGTVRCPSCCGAKRKAKQSR--RCQLCAGSGRRRC 204
>gi|239748594 PREDICTED: hypothetical protein XP_002346735 [Homo
sapiens]
Length = 262
Score = 29.3 bits (64), Expect = 0.79
Identities = 22/76 (28%), Positives = 31/76 (40%), Gaps = 5/76 (6%)
Query: 15 PAPAWQKAPESRGLCPEEVSSCVKGPGRGRWASLGFAEGPGTHTAGLAVEGRARGVSARS 74
PA + P+ G+C E ++ ++ PGRG G A T G A ++ARS
Sbjct: 8 PARSANPRPQFPGVCGREHAATLRAPGRG-----GGASPAQIGTRGRGGHNFAPNLTARS 62
Query: 75 WHCHACSGPGTRECVG 90
GP VG
Sbjct: 63 AVTSGLGGPPAAVMVG 78
>gi|153792074 proline rich 12 [Homo sapiens]
Length = 2036
Score = 29.3 bits (64), Expect = 0.79
Identities = 29/100 (29%), Positives = 37/100 (37%), Gaps = 12/100 (12%)
Query: 6 GRCLRAGPAPAPAWQKAPESRGLCPEEVSSCVKGPGRGRWASL----GFAEGPGTHTAGL 61
G +AGP+ A A R PE G G G + + G+ G G + G
Sbjct: 344 GEPSKAGPSGATA---GASGRATGPEAAGGGGAGGGGGGYRPIIQSPGYKTGKGGY--GA 398
Query: 62 AVEGRARGVSARSW---HCHACSGPGTRECVGQAVGRQGA 98
A G R RS C + GP G+A G GA
Sbjct: 399 AAGGATRPPPPRSTATPKCQSLGGPAAAYATGKASGAGGA 438
>gi|31317307 proprotein convertase subtilisin/kexin type 9
preproprotein [Homo sapiens]
Length = 692
Score = 28.9 bits (63), Expect = 1.0
Identities = 22/56 (39%), Positives = 27/56 (48%), Gaps = 7/56 (12%)
Query: 55 GTHTAGLAVEGR----ARGVSARSWHCHACSGPGTRECVGQAVGRQGARLRPWLQP 106
GTH AG+ V GR A+G S RS C G GT G +G + R +QP
Sbjct: 227 GTHLAGV-VSGRDAGVAKGASMRSLRVLNCQGKGT--VSGTLIGLEFIRKSQLVQP 279
>gi|239751471 PREDICTED: hypothetical protein XP_002347846 [Homo
sapiens]
Length = 870
Score = 28.9 bits (63), Expect = 1.0
Identities = 29/88 (32%), Positives = 35/88 (39%), Gaps = 10/88 (11%)
Query: 18 AWQKAPESRGLCPE-EVSSCVKGPGRGRWASLGFAEGPGTHTAGLAVEGRARGVSARSWH 76
A Q+ E+ GL E + ++G G LG A GP G GR RG R
Sbjct: 419 ALQQILEAVGLAGGIEAAVLLRGARAGETTPLGEARGPCWKARGAVPSGRLRGRPGR--- 475
Query: 77 CHACSGPGTRECVGQA---VGRQGARLR 101
+G R QA GR ARLR
Sbjct: 476 ---VAGASGRRGASQARGGTGRAPARLR 500
>gi|122937233 discs, large (Drosophila) homolog-associated protein 3
[Homo sapiens]
Length = 979
Score = 28.5 bits (62), Expect = 1.3
Identities = 25/76 (32%), Positives = 29/76 (38%), Gaps = 3/76 (3%)
Query: 11 AGPAPAPAWQKAPESRGLCPEEVSSCVKGPGRGRWASLGFAEGPGTHT-AGLAVEGRARG 69
AGP PAP APE R P + V + +A E PG G EGR G
Sbjct: 148 AGPGPAPGTGTAPEPRSESPSRIRHLVHSVQK-LFAKSHSLEAPGKRDYNGPKAEGRG-G 205
Query: 70 VSARSWHCHACSGPGT 85
S+ GP T
Sbjct: 206 SGGDSYPGPGSGGPHT 221
>gi|56237021 fibrillin 3 precursor [Homo sapiens]
Length = 2809
Score = 28.5 bits (62), Expect = 1.3
Identities = 22/74 (29%), Positives = 30/74 (40%), Gaps = 6/74 (8%)
Query: 21 KAPESRGLCPEEVSSCVKGPGRGRWASLGFAEGPG-THTAGLAVEGRARGVSARSWHCHA 79
+ P +R L C+ G G+GRW A GPG G + V +H +
Sbjct: 10 RGPLARLLLAWSALLCMAG-GQGRWDGALEAAGPGRVRRRGSPGILQGPNVCGSRFHAYC 68
Query: 80 CSG----PGTRECV 89
C G PG +CV
Sbjct: 69 CPGWRTFPGRSQCV 82
>gi|32189362 PTPRF interacting protein alpha 3 [Homo sapiens]
Length = 1194
Score = 28.1 bits (61), Expect = 1.8
Identities = 22/71 (30%), Positives = 31/71 (43%), Gaps = 12/71 (16%)
Query: 16 APAWQK---APESRGLCPEEVSSCVKGPGRGRWASLGFAEGPGTHTAGLAVEG------R 66
+P+W+K + RG+ P+ P R A+ G PG L EG R
Sbjct: 1127 SPSWRKMFREKDLRGVTPDSAEML---PPNFRSAAAGALGSPGLPLRKLQPEGQTSGSSR 1183
Query: 67 ARGVSARSWHC 77
A GVS R++ C
Sbjct: 1184 ADGVSVRTYSC 1194
>gi|47271475 SPOC domain containing 1 [Homo sapiens]
Length = 1216
Score = 28.1 bits (61), Expect = 1.8
Identities = 25/90 (27%), Positives = 34/90 (37%), Gaps = 18/90 (20%)
Query: 9 LRAGPAPAPAWQKAPESRGLCPEEVSSCVKGP-GRGR-------WASLGFAEGP------ 54
L+ P P AWQ++ + P +S+ + P GRGR W G + P
Sbjct: 1059 LKGTPPPGGAWQQSQGRGSIAPRGISAWQRPPRGRGRLWPEPENWQHPGRGQWPPEPGLR 1118
Query: 55 -GTHTAGLAVEGRARGVSARSWHCHACSGP 83
H +A G G R H H S P
Sbjct: 1119 QSQHPYSVAPAGHGFG---RGQHFHRDSCP 1145
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.135 0.476
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,818,273
Number of Sequences: 37866
Number of extensions: 366568
Number of successful extensions: 1432
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 101
Number of HSP's that attempted gapping in prelim test: 1377
Number of HSP's gapped (non-prelim): 156
length of query: 123
length of database: 18,247,518
effective HSP length: 89
effective length of query: 34
effective length of database: 14,877,444
effective search space: 505833096
effective search space used: 505833096
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.