Guide to the Human Genome
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Name: LOC100288524 Sequence: fasta or formatted (591aa) NCBI GI: 239743053
Description:

PREDICTED: hypothetical protein XP_002342748

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.5         68           3
 C cysteine            1.9         11           1
 D aspartate           3.6         21           2
 E glutamate           4.2         25           1
 F phenylalanine       3.0         18           1
 G glycine            11.0         65           3
 H histidine           2.2         13           2
 I isoleucine          2.2         13           1
 K lysine              2.4         14           1
 L leucine             7.1         42           2
 M methionine          1.5          9           1
 N asparagine          2.5         15           1
 P proline            10.7         63           3
 Q glutamine           3.4         20           2
 R arginine           13.4         79           7
 S serine              9.0         53           3
 T threonine           3.0         18           2
 V valine              2.7         16           2
 W tryptophan          2.2         13           1
 Y tyrosine            2.5         15           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002342748 
LOC651986             0.488   PREDICTED: similar to forkhead box L2 
LOC651986             0.324   PREDICTED: similar to forkhead box L2 
LOC651986             0.308   PREDICTED: similar to forkhead box L2 
FOXL1                 0.101   forkhead box L1 
FOXL2                 0.096   forkhead box L2 
FOXD2                 0.092   forkhead box D2 
FOXS1                 0.092   forkhead box S1 
FOXE3                 0.088   forkhead box E3 
FOXC1                 0.086   forkhead box C1 
FOXI3                 0.086   forkhead box I3 
FOXA1                 0.085   forkhead box A1 
FOXD1                 0.085   forkhead box D1 
FOXD4L3               0.084   forkhead box D4-like 3 
FOXA2                 0.084   forkhead box A2 isoform 2 
FOXA2                 0.084   forkhead box A2 isoform 1 
FOXI2                 0.084   forkhead box I2 
FOXD4L2               0.083   forkhead box D4-like 2 
FOXD4L6               0.083   forkhead box D4-like 6 
FOXD4L4               0.083   forkhead box D4-like 4 
FOXD4                 0.083   forkhead box D4 
FOXD4L5               0.083   forkhead box D4-like 5 
FOXD3                 0.083   forkhead box D3 
FOXC2                 0.082   forkhead box C2 
FOXE1                 0.082   forkhead box E1 
FOXD4L1               0.081   forkhead box D4-like 1 
FOXI1                 0.080   forkhead box I1 isoform a 
FOXQ1                 0.078   forkhead box Q1 
FOXA3                 0.074   forkhead box A3 
FOXF2                 0.073   forkhead box F2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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