Search of human proteins with 239742954

Search of human proteins with 239742954

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239742954 PREDICTED: hypothetical protein XP_002342704 [Homo
sapiens]
         (192 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239742954 PREDICTED: hypothetical protein XP_002342704 [Homo ...   402   e-112
gi|239748932 PREDICTED: hypothetical protein XP_002346861 [Homo ...   314   3e-86
gi|239754431 PREDICTED: hypothetical protein [Homo sapiens]           219   9e-58
gi|169206489 PREDICTED: hypothetical protein [Homo sapiens]            40   0.001
gi|169205942 PREDICTED: hypothetical protein [Homo sapiens]            40   0.001
gi|239754468 PREDICTED: hypothetical protein [Homo sapiens]            39   0.002
gi|239749023 PREDICTED: hypothetical protein XP_002346884 [Homo ...    39   0.002
gi|239743042 PREDICTED: hypothetical protein XP_002342725 [Homo ...    39   0.002
gi|171543895 ataxin 2 [Homo sapiens]                                   38   0.006
gi|153285461 fibroblast growth factor 2 [Homo sapiens]                 37   0.010
gi|14249622 ajuba isoform 1 [Homo sapiens]                             37   0.010
gi|164565408 common-site lymphoma/leukemia guanine nucleotide ex...    37   0.013
gi|239750867 PREDICTED: hypothetical protein XP_002347588 [Homo ...    36   0.023
gi|169172132 PREDICTED: similar to forkhead box L2 [Homo sapiens]      36   0.023
gi|4885407 hyperpolarization activated cyclic nucleotide-gated p...    35   0.030
gi|169169586 PREDICTED: hypothetical protein [Homo sapiens]            35   0.030
gi|169164483 PREDICTED: hypothetical protein [Homo sapiens]            35   0.039
gi|113414226 PREDICTED: hypothetical protein [Homo sapiens]            35   0.039
gi|113413437 PREDICTED: hypothetical protein [Homo sapiens]            35   0.039
gi|42475970 synapse defective 1, Rho GTPase, homolog 1 [Homo sap...    35   0.039
gi|26051231 lactamase, beta isoform a [Homo sapiens]                   35   0.051
gi|26051233 lactamase, beta isoform b [Homo sapiens]                   35   0.051
gi|12751477 forkhead box L2 [Homo sapiens]                             34   0.067
gi|4758216 dishevelled 2 [Homo sapiens]                                34   0.067
gi|40068464 AT rich interactive domain 1B (SWI1-like) isoform 2 ...    34   0.067
gi|40068466 AT rich interactive domain 1B (SWI1-like) isoform 1 ...    34   0.067
gi|40068462 AT rich interactive domain 1B (SWI1-like) isoform 3 ...    34   0.067
gi|239747651 PREDICTED: hypothetical protein XP_002348127 [Homo ...    34   0.087
gi|57864582 hornerin [Homo sapiens]                                    33   0.11 
gi|239756441 PREDICTED: hypothetical protein LOC388199 [Homo sap...    33   0.11 

>gi|239742954 PREDICTED: hypothetical protein XP_002342704 [Homo
           sapiens]
          Length = 192

 Score =  402 bits (1032), Expect = e-112
 Identities = 192/192 (100%), Positives = 192/192 (100%)

Query: 1   MYFHKQRTSFSGMNLLGPCPSGRGILMPSTSSWSRPPPHCLQPSSPETAKGAVYASFAAA 60
           MYFHKQRTSFSGMNLLGPCPSGRGILMPSTSSWSRPPPHCLQPSSPETAKGAVYASFAAA
Sbjct: 1   MYFHKQRTSFSGMNLLGPCPSGRGILMPSTSSWSRPPPHCLQPSSPETAKGAVYASFAAA 60

Query: 61  AKRMSARGRLRTRGGGERWAAGRGSWLQRLSQHGRRGGGAAPTNKPRGPAPRPSFHRPGG 120
           AKRMSARGRLRTRGGGERWAAGRGSWLQRLSQHGRRGGGAAPTNKPRGPAPRPSFHRPGG
Sbjct: 61  AKRMSARGRLRTRGGGERWAAGRGSWLQRLSQHGRRGGGAAPTNKPRGPAPRPSFHRPGG 120

Query: 121 HASQCGLASPQSTAPPARRLGTGGLTRRVYSKALQFLIFLHKRPPWVIKTEFQSLKSDEE 180
           HASQCGLASPQSTAPPARRLGTGGLTRRVYSKALQFLIFLHKRPPWVIKTEFQSLKSDEE
Sbjct: 121 HASQCGLASPQSTAPPARRLGTGGLTRRVYSKALQFLIFLHKRPPWVIKTEFQSLKSDEE 180

Query: 181 LGKIQVTKEKNN 192
           LGKIQVTKEKNN
Sbjct: 181 LGKIQVTKEKNN 192


>gi|239748932 PREDICTED: hypothetical protein XP_002346861 [Homo
           sapiens]
          Length = 162

 Score =  314 bits (805), Expect = 3e-86
 Identities = 148/148 (100%), Positives = 148/148 (100%)

Query: 1   MYFHKQRTSFSGMNLLGPCPSGRGILMPSTSSWSRPPPHCLQPSSPETAKGAVYASFAAA 60
           MYFHKQRTSFSGMNLLGPCPSGRGILMPSTSSWSRPPPHCLQPSSPETAKGAVYASFAAA
Sbjct: 1   MYFHKQRTSFSGMNLLGPCPSGRGILMPSTSSWSRPPPHCLQPSSPETAKGAVYASFAAA 60

Query: 61  AKRMSARGRLRTRGGGERWAAGRGSWLQRLSQHGRRGGGAAPTNKPRGPAPRPSFHRPGG 120
           AKRMSARGRLRTRGGGERWAAGRGSWLQRLSQHGRRGGGAAPTNKPRGPAPRPSFHRPGG
Sbjct: 61  AKRMSARGRLRTRGGGERWAAGRGSWLQRLSQHGRRGGGAAPTNKPRGPAPRPSFHRPGG 120

Query: 121 HASQCGLASPQSTAPPARRLGTGGLTRR 148
           HASQCGLASPQSTAPPARRLGTGGLTRR
Sbjct: 121 HASQCGLASPQSTAPPARRLGTGGLTRR 148


>gi|239754431 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 134

 Score =  219 bits (559), Expect = 9e-58
 Identities = 125/192 (65%), Positives = 127/192 (66%), Gaps = 58/192 (30%)

Query: 1   MYFHKQRTSFSGMNLLGPCPSGRGILMPSTSSWSRPPPHCLQPSSPETAKGAVYASFAAA 60
           MYFHKQRTSFSGMNLLGPCPSGRGILMPSTSSWSRPPPHCLQPSSPETAKGAVYASFAAA
Sbjct: 1   MYFHKQRTSFSGMNLLGPCPSGRGILMPSTSSWSRPPPHCLQPSSPETAKGAVYASFAAA 60

Query: 61  AKRMSARGRLRTRGGGERWAAGRGSWLQRLSQHGRRGGGAAPTNKPRGPAPRPSFHRPGG 120
           AKRMSARGRLRTR                       GGG       R  A R S+     
Sbjct: 61  AKRMSARGRLRTR-----------------------GGGE------RWAAGRGSW----- 86

Query: 121 HASQCGLASPQSTAPPARRLGTGGLTRRVYSKALQFLIFLHKRPPWVIKTEFQSLKSDEE 180
                                   L R +YSKALQFLIFLHKRPPWVIKTEFQSLKSDEE
Sbjct: 87  ------------------------LQRLIYSKALQFLIFLHKRPPWVIKTEFQSLKSDEE 122

Query: 181 LGKIQVTKEKNN 192
           LGKIQVTKEKNN
Sbjct: 123 LGKIQVTKEKNN 134


>gi|169206489 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 564

 Score = 40.0 bits (92), Expect = 0.001
 Identities = 40/139 (28%), Positives = 48/139 (34%), Gaps = 32/139 (23%)

Query: 15  LLGPCPSGRGILMPSTSSWSRPPPHCLQPS--------SPETAKGAVYASFAAAAKRMSA 66
           LL P  + R   +P+       PP               P   KGAV    + A +    
Sbjct: 293 LLDPSKAARASALPTARVAHASPPSLAAAQWRLGGGKRKPTVLKGAVRTDLSTAEEEDPR 352

Query: 67  RGR-LRTRGGGERWAAGRGSWLQRLSQHGRRGGGAAPTNKPRGPAPRPSFHRPGGHASQC 125
            GR L    G E WA        R  +HG   G            P PS  RPG  A   
Sbjct: 353 SGRALEPAQGSELWA--------RAERHGGSSGART--------LPTPSRARPGKPA--- 393

Query: 126 GLASPQSTAPPARRLGTGG 144
               P+ +APPAR  G GG
Sbjct: 394 ----PRGSAPPARLRGGGG 408


>gi|169205942 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 564

 Score = 40.0 bits (92), Expect = 0.001
 Identities = 40/139 (28%), Positives = 48/139 (34%), Gaps = 32/139 (23%)

Query: 15  LLGPCPSGRGILMPSTSSWSRPPPHCLQPS--------SPETAKGAVYASFAAAAKRMSA 66
           LL P  + R   +P+       PP               P   KGAV    + A +    
Sbjct: 293 LLDPSKAARASALPTARVAHASPPSLAAAQWRLGGGKRKPTVLKGAVRTDLSTAEEEDPR 352

Query: 67  RGR-LRTRGGGERWAAGRGSWLQRLSQHGRRGGGAAPTNKPRGPAPRPSFHRPGGHASQC 125
            GR L    G E WA        R  +HG   G            P PS  RPG  A   
Sbjct: 353 SGRALEPAQGSELWA--------RAERHGGSSGART--------LPTPSRARPGKPA--- 393

Query: 126 GLASPQSTAPPARRLGTGG 144
               P+ +APPAR  G GG
Sbjct: 394 ----PRGSAPPARLRGGGG 408


>gi|239754468 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 146

 Score = 39.3 bits (90), Expect = 0.002
 Identities = 30/67 (44%), Positives = 32/67 (47%), Gaps = 5/67 (7%)

Query: 73  RGGGERWAAGRGSWL-QRLSQHGRRGGGAAPTNKPRGPAPRPSFHRPGGHASQCGLASPQ 131
           R  G      RGS   +RLS  GRR G  APT  PRGP PRP      G A     A P 
Sbjct: 28  RASGRHLRRRRGSCSSRRLSGPGRRAG--APT--PRGPPPRPRSFPETGPARLGAAAGPS 83

Query: 132 STAPPAR 138
           S A P+R
Sbjct: 84  SRARPSR 90


>gi|239749023 PREDICTED: hypothetical protein XP_002346884 [Homo
           sapiens]
          Length = 159

 Score = 39.3 bits (90), Expect = 0.002
 Identities = 30/67 (44%), Positives = 32/67 (47%), Gaps = 5/67 (7%)

Query: 73  RGGGERWAAGRGSWL-QRLSQHGRRGGGAAPTNKPRGPAPRPSFHRPGGHASQCGLASPQ 131
           R  G      RGS   +RLS  GRR G  APT  PRGP PRP      G A     A P 
Sbjct: 41  RASGRHLRRRRGSCSSRRLSGPGRRAG--APT--PRGPPPRPRSFPETGPARLGAAAGPS 96

Query: 132 STAPPAR 138
           S A P+R
Sbjct: 97  SRARPSR 103


>gi|239743042 PREDICTED: hypothetical protein XP_002342725 [Homo
           sapiens]
          Length = 159

 Score = 39.3 bits (90), Expect = 0.002
 Identities = 30/67 (44%), Positives = 32/67 (47%), Gaps = 5/67 (7%)

Query: 73  RGGGERWAAGRGSWL-QRLSQHGRRGGGAAPTNKPRGPAPRPSFHRPGGHASQCGLASPQ 131
           R  G      RGS   +RLS  GRR G  APT  PRGP PRP      G A     A P 
Sbjct: 41  RASGRHLRRRRGSCSSRRLSGPGRRAG--APT--PRGPPPRPRSFPETGPARLGAAAGPS 96

Query: 132 STAPPAR 138
           S A P+R
Sbjct: 97  SRARPSR 103


>gi|171543895 ataxin 2 [Homo sapiens]
          Length = 1313

 Score = 37.7 bits (86), Expect = 0.006
 Identities = 38/101 (37%), Positives = 44/101 (43%), Gaps = 13/101 (12%)

Query: 58  AAAAKRMSARGRLRTRGGGERWAAGRGSWLQRLSQH-GRRGGGAAP------TNKPRGPA 110
           AAAA R  A      R    RW   R   LQR ++  GR GGGAAP         P GP 
Sbjct: 4   AAAAPRSPAVATESRRFAAARWPGWRS--LQRPARRSGRGGGGAAPGPYPSAAPPPPGPG 61

Query: 111 PRPSFHRPGGHASQCGLASPQ---STAPPARR-LGTGGLTR 147
           P PS       AS C  ++     +  P +RR LG GG  R
Sbjct: 62  PPPSRQSSPPSASDCFGSNGNGGGAFRPGSRRLLGLGGPPR 102



 Score = 31.6 bits (70), Expect = 0.43
 Identities = 20/48 (41%), Positives = 24/48 (50%), Gaps = 4/48 (8%)

Query: 100 AAPTNKPRGPAPRPSFHRPGGHASQCGLASPQSTAPPARRLGTGGLTR 147
           A PT  P  P  RPS  RP  H S  G  +P ST P  +R+ + G  R
Sbjct: 579 ATPTRPPSRPPSRPS--RPPSHPSAHGSPAPVSTMP--KRMSSEGPPR 622


>gi|153285461 fibroblast growth factor 2 [Homo sapiens]
          Length = 288

 Score = 37.0 bits (84), Expect = 0.010
 Identities = 32/104 (30%), Positives = 43/104 (41%), Gaps = 3/104 (2%)

Query: 60  AAKRMSARGRLRTRGGGERWAAGRGSWLQRLSQHGRRGGGAAPTNKP--RGPAPRPSFHR 117
           +  R+  RGR R   GG     GRG   +R+   GR  G AAP   P  RG  P P+   
Sbjct: 75  SGSRLGDRGRGRALPGGRLGGRGRGRAPERVGGRGRGRGTAAPRAAPAARGSRPGPAGTM 134

Query: 118 PGGHASQCGLASPQSTAPPARRLGTGGLTRRVYSKALQFLIFLH 161
             G  +    A P+     A   G     +R+Y K   F + +H
Sbjct: 135 AAGSITTLP-ALPEDGGSGAFPPGHFKDPKRLYCKNGGFFLRIH 177


>gi|14249622 ajuba isoform 1 [Homo sapiens]
          Length = 538

 Score = 37.0 bits (84), Expect = 0.010
 Identities = 40/128 (31%), Positives = 55/128 (42%), Gaps = 17/128 (13%)

Query: 6   QRTSFSGMNLLGPCPSG----RGILMPSTSSWSRPPPHCLQPSSPETAKGAVYASFAA-- 59
           QR SF      G  P+G    R + +P     S PP   L+P++P  +  + +AS +A  
Sbjct: 76  QRGSFEAPRYEGSFPAGPPPTRALPLPQ----SLPPDFRLEPTAPALSPRSSFASSSASD 131

Query: 60  AAKRMSARGRLRTRGGGERWAAGRGSWLQRLS----QHGRRGGGAAPTNKPR-GP--APR 112
           A+K  S RG L   G G   A G      R S     + +R G   P      GP  A  
Sbjct: 132 ASKPSSPRGSLLLDGAGAGGAGGSRPCSNRTSGISMGYDQRHGSPLPAGPCLFGPPLAGA 191

Query: 113 PSFHRPGG 120
           P+ + PGG
Sbjct: 192 PAGYSPGG 199


>gi|164565408 common-site lymphoma/leukemia guanine nucleotide
            exchange factor [Homo sapiens]
          Length = 1386

 Score = 36.6 bits (83), Expect = 0.013
 Identities = 32/106 (30%), Positives = 42/106 (39%), Gaps = 32/106 (30%)

Query: 37   PPHCLQPSSPETA--KGAVYASFAAAAKRMSARGRLRTRGGGERWAAGRGSWLQRLSQHG 94
            PPH   PSS +      A  + + AA+    +  R +  GGG   AA RGSW        
Sbjct: 1258 PPHSPPPSSRQLLGPNAAALSRYLAASYISQSLARRQGPGGGAP-AASRGSW-------- 1308

Query: 95   RRGGGAAPTNKPRGPAPRPSFHRPGGHASQCGLASPQSTAPPARRL 140
                 +APT++   P P+                 PQ   PPARRL
Sbjct: 1309 ----SSAPTSRASSPPPQ-----------------PQPPPPPARRL 1333


>gi|239750867 PREDICTED: hypothetical protein XP_002347588 [Homo
           sapiens]
          Length = 800

 Score = 35.8 bits (81), Expect = 0.023
 Identities = 35/137 (25%), Positives = 49/137 (35%), Gaps = 21/137 (15%)

Query: 17  GPCPSGRGILMPSTSSWSRPPPHCLQPSSPETAKGAVYASFAAAAKRMSARGRLRTRGGG 76
           GP P+  G   PSTS    PP          T +G    S A   KR   +G     G  
Sbjct: 312 GP-PAHPGPGRPSTSPCPLPPSLLCLWVESGTPRGR--QSLAEGVKRDGGQGLPDVEGAP 368

Query: 77  ERWAAGRGSWLQRLSQHGRR------------------GGGAAPTNKPRGPAPRPSFHRP 118
           +  ++G G+ L+  S   R                   GG   P+ + RGP+P+     P
Sbjct: 369 DMGSSGEGAGLEEGSPLRRERAWPPPSLRTPTPGLTEGGGTGLPSKQRRGPSPKTELGGP 428

Query: 119 GGHASQCGLASPQSTAP 135
            G   +  L+ P    P
Sbjct: 429 QGSLGRASLSGPFGPGP 445


>gi|169172132 PREDICTED: similar to forkhead box L2 [Homo sapiens]
          Length = 528

 Score = 35.8 bits (81), Expect = 0.023
 Identities = 39/160 (24%), Positives = 53/160 (33%), Gaps = 27/160 (16%)

Query: 1   MYFHKQRTSFSGMNLLGPCPSGRGILMPSTSSWSRPPPHCLQPSSPETAKGAVYASFAAA 60
           M F    T    ++  GP   G     P   +W+ PP   +  + P  A   V  +    
Sbjct: 1   MAFDNFGTQIPILSARGPVNHG-----PLLWTWTAPPGAPILAAPPSRAHPRVRIASLHR 55

Query: 61  AKRMSARGRLRTRGGGERWAAGRG-----SWLQRLSQHGRRGGGAAPTNKP--------- 106
            +   A G+   RG G  WA G+G     +W + L       GG+    +P         
Sbjct: 56  FRIEDAHGQQEVRGEGTYWAVGKGVLSGRTWCEMLV---AGAGGSQKAGRPHFQGRVDVM 112

Query: 107 -RGPAPRPSFHRPGGHASQCGLASPQSTAPPARRLGTGGL 145
            R P   P    PG H    G      T       GTG L
Sbjct: 113 RRDPRVLPGIPAPGKHHRVSGAPRAHGTGAH----GTGAL 148


>gi|4885407 hyperpolarization activated cyclic nucleotide-gated
           potassium channel 4 [Homo sapiens]
          Length = 1203

 Score = 35.4 bits (80), Expect = 0.030
 Identities = 40/140 (28%), Positives = 54/140 (38%), Gaps = 13/140 (9%)

Query: 8   TSFSGMNLLG-PCPSGRGILMPSTSSWSRPPPHCLQPSSPETAKGAVYASFAAAAKRMSA 66
           +SF    L G   P+G   L+PS+SS S PP  C  PS+P  + G        AA  ++ 
Sbjct: 855 SSFHIQQLAGFSAPAGLSPLLPSSSS-SPPPGACGSPSAPTPSAG-------VAATTIAG 906

Query: 67  RGRLRTRGGGERWAAGRGSWLQRLSQHGRRGGGAAPTNKP---RGPAPRPSFHRPGGHAS 123
            G      GG   ++     L  L    R    A P+  P   RG    P    P   +S
Sbjct: 907 FGHFHKALGGS-LSSSDSPLLTPLQPGARSPQAAQPSPAPPGARGGLGLPEHFLPPPPSS 965

Query: 124 QCGLASPQSTAPPARRLGTG 143
           +   +SP     P   L  G
Sbjct: 966 RSPSSSPGQLGQPPGELSLG 985


>gi|169169586 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 251

 Score = 35.4 bits (80), Expect = 0.030
 Identities = 46/148 (31%), Positives = 55/148 (37%), Gaps = 25/148 (16%)

Query: 24  GILMPSTSSWSRPPPHCL------QPSSPETAKGAVYASFAAA-AKRMSARGRLRTRGGG 76
           G   P+T + S  PP C       +  SP  A GAV +  AAA   R + RG     G  
Sbjct: 28  GTRTPATPARSPRPPLCAPRPAPGRAQSPVPAAGAVPSPPAAAHPARPALRGETPAPGRR 87

Query: 77  ERWAAGRG----SWLQRLSQHGRRGGGAAPTNKPRGPAPRPSFH----RPGGHAS----- 123
            R A  RG    S    LS    RGGG       +GP P PS       PGG  +     
Sbjct: 88  GR-ATTRGEVQPSVRPPLSHRPLRGGGMGRGRPGKGPPPNPSRRLPPAPPGGRRTWLSAL 146

Query: 124 ----QCGLASPQSTAPPARRLGTGGLTR 147
                 G A  +  +PP  R    G  R
Sbjct: 147 ATGPAAGGAGRRRRSPPVFRAADWGFGR 174


>gi|169164483 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 324

 Score = 35.0 bits (79), Expect = 0.039
 Identities = 30/99 (30%), Positives = 38/99 (38%), Gaps = 3/99 (3%)

Query: 43  PSSPETAKGAVYASFAAAAKRMSARGRLRTRGGGERWAAGRGSWLQRLSQHGRRGGGAAP 102
           P  P   K +  A  +A  +R   R    TRGG  R    RG     +   G R  GA P
Sbjct: 146 PGLPPRGKASGPARDSAQQRRRPTRRPRGTRGGARRPGV-RGQGAAAVGPTGPRPTGAPP 204

Query: 103 TNKPRGPAPRPSFHRP--GGHASQCGLASPQSTAPPARR 139
           + +   P PR     P  G   +     SP + AP A R
Sbjct: 205 SRRTPPPGPRRPLRSPHSGSGWTPARPPSPPAGAPEALR 243


>gi|113414226 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 324

 Score = 35.0 bits (79), Expect = 0.039
 Identities = 30/99 (30%), Positives = 38/99 (38%), Gaps = 3/99 (3%)

Query: 43  PSSPETAKGAVYASFAAAAKRMSARGRLRTRGGGERWAAGRGSWLQRLSQHGRRGGGAAP 102
           P  P   K +  A  +A  +R   R    TRGG  R    RG     +   G R  GA P
Sbjct: 146 PGLPPRGKASGPARDSAQQRRRPTRRPRGTRGGARRPGV-RGQGAAAVGPTGPRPTGAPP 204

Query: 103 TNKPRGPAPRPSFHRP--GGHASQCGLASPQSTAPPARR 139
           + +   P PR     P  G   +     SP + AP A R
Sbjct: 205 SRRTPPPGPRRPLRSPHSGSGWTPARPPSPPAGAPEALR 243


>gi|113413437 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 324

 Score = 35.0 bits (79), Expect = 0.039
 Identities = 30/99 (30%), Positives = 38/99 (38%), Gaps = 3/99 (3%)

Query: 43  PSSPETAKGAVYASFAAAAKRMSARGRLRTRGGGERWAAGRGSWLQRLSQHGRRGGGAAP 102
           P  P   K +  A  +A  +R   R    TRGG  R    RG     +   G R  GA P
Sbjct: 146 PGLPPRGKASGPARDSAQQRRRPTRRPRGTRGGARRPGV-RGQGAAAVGPTGPRPTGAPP 204

Query: 103 TNKPRGPAPRPSFHRP--GGHASQCGLASPQSTAPPARR 139
           + +   P PR     P  G   +     SP + AP A R
Sbjct: 205 SRRTPPPGPRRPLRSPHSGSGWTPARPPSPPAGAPEALR 243


>gi|42475970 synapse defective 1, Rho GTPase, homolog 1 [Homo
           sapiens]
          Length = 735

 Score = 35.0 bits (79), Expect = 0.039
 Identities = 40/134 (29%), Positives = 50/134 (37%), Gaps = 19/134 (14%)

Query: 36  PPPHCLQPSSPETAKGAVYASFAAAAKRMSARGRL--RTRGGGERWAAGRGSWLQRLSQH 93
           P P   +P +PE ++       +  A R  ARG           RW  G     +  S  
Sbjct: 38  PSPPEPEPQAPEGSQAGAEGPSSPEASRSPARGAYLQSLEPSSRRWVLGGAKPAEDTSLG 97

Query: 94  -GRRGGGAA---------PTNKPRGPAPRPSFHRPGGHASQCGLASPQSTAP-----PAR 138
            G  G G           P   PR PAP P   +PG   S+ GLA PQ  AP      A 
Sbjct: 98  PGVPGTGEPAGEIWYNPIPEEDPRPPAPEPPGPQPGSAESE-GLA-PQGAAPASPPTKAS 155

Query: 139 RLGTGGLTRRVYSK 152
           R  + G  RR+  K
Sbjct: 156 RTKSPGPARRLSIK 169


>gi|26051231 lactamase, beta isoform a [Homo sapiens]
          Length = 547

 Score = 34.7 bits (78), Expect = 0.051
 Identities = 29/97 (29%), Positives = 33/97 (34%), Gaps = 2/97 (2%)

Query: 45  SPETAKGAVYASFAAAAKRMSARGRLRTRGGGERWAAGRGSWLQRLSQHGRRGG--GAAP 102
           S  TA+ A     A++  R     R      G  W  G G  L         GG  GAAP
Sbjct: 6   SAVTARAAAPGGLASSCGRRGVHQRAGLPPLGHGWVGGLGLGLGLALGVKLAGGLRGAAP 65

Query: 103 TNKPRGPAPRPSFHRPGGHASQCGLASPQSTAPPARR 139
              P  P P  S              SPQ+ APP  R
Sbjct: 66  AQSPAAPDPEASPLAEPPQEQSLAPWSPQTPAPPCSR 102


>gi|26051233 lactamase, beta isoform b [Homo sapiens]
          Length = 373

 Score = 34.7 bits (78), Expect = 0.051
 Identities = 29/97 (29%), Positives = 33/97 (34%), Gaps = 2/97 (2%)

Query: 45  SPETAKGAVYASFAAAAKRMSARGRLRTRGGGERWAAGRGSWLQRLSQHGRRGG--GAAP 102
           S  TA+ A     A++  R     R      G  W  G G  L         GG  GAAP
Sbjct: 6   SAVTARAAAPGGLASSCGRRGVHQRAGLPPLGHGWVGGLGLGLGLALGVKLAGGLRGAAP 65

Query: 103 TNKPRGPAPRPSFHRPGGHASQCGLASPQSTAPPARR 139
              P  P P  S              SPQ+ APP  R
Sbjct: 66  AQSPAAPDPEASPLAEPPQEQSLAPWSPQTPAPPCSR 102


>gi|12751477 forkhead box L2 [Homo sapiens]
          Length = 376

 Score = 34.3 bits (77), Expect = 0.067
 Identities = 43/160 (26%), Positives = 55/160 (34%), Gaps = 34/160 (21%)

Query: 12  GMNLLGPCPSGRGILMPS--------TSSWSRP-PPHCLQPSSPETAKGAVYASFAAAAK 62
           G  + G    G G L P          +SW  P PP  +  +S + A  A  A+ AAAA 
Sbjct: 175 GCGVAGAGADGYGYLAPPKYLQSGFLNNSWPLPQPPSPMPYASCQMAAAAAAAAAAAAAA 234

Query: 63  RMSARGRLRTRGGGERWAAGRGSWLQRLSQ-------HGRRGGGAAPTNKPRGPAPRPSF 115
              + G      G    AA  G + +  S        +   G G  P   P  P P P  
Sbjct: 235 GPGSPGAAAVVKGLAGPAASYGPYTRVQSMALPPGVVNSYNGLGGPPAAPPPPPHPHPHP 294

Query: 116 HRPGGHAS------------------QCGLASPQSTAPPA 137
           H    HA+                  Q   ASP + APPA
Sbjct: 295 HAHHLHAAAAPPPAPPHHGAAAPPPGQLSPASPATAAPPA 334


>gi|4758216 dishevelled 2 [Homo sapiens]
          Length = 736

 Score = 34.3 bits (77), Expect = 0.067
 Identities = 32/134 (23%), Positives = 45/134 (33%), Gaps = 10/134 (7%)

Query: 11  SGMNLLGPCPSGRGILMPSTSSWSRPPPHCLQPSSPETAKGAVYASFAAAAKRMSARGRL 70
           S  + L P P      +  T S+  P PH   P  P   + + Y     +A    + G  
Sbjct: 531 SDQDTLAPLPGATPWPLLPTFSYQYPAPHPYSPQPPPYHELSSYTYGGGSASSQHSEGSR 590

Query: 71  RTRGGGERWAAGRGSWLQRLSQHGRRGGGAAPTNKPRGPAPRPSFHRPGGHASQCGLASP 130
            +        AGR    +  +   + G G+        P+ R    R GG AS       
Sbjct: 591 SSGSTRSDGGAGRTGRPEERAPESKSGSGSESE-----PSSRGGSLRRGGEAS-----GT 640

Query: 131 QSTAPPARRLGTGG 144
               PP  R  TGG
Sbjct: 641 SDGGPPPSRGSTGG 654


>gi|40068464 AT rich interactive domain 1B (SWI1-like) isoform 2
           [Homo sapiens]
          Length = 2191

 Score = 34.3 bits (77), Expect = 0.067
 Identities = 43/145 (29%), Positives = 55/145 (37%), Gaps = 22/145 (15%)

Query: 15  LLGPCPSGR--GILMPSTSSWSRPPPHCLQPSSPETAKGAVYASFAAAAKRMSARGRLRT 72
           L  P P  R  G   P  SS S PPP   QP S   A G      AAA  + +A G    
Sbjct: 365 LTSPSPMMRSYGGSYPEYSSPSAPPPPPSQPQSQAAAAG------AAAGGQQAAAGMGLG 418

Query: 73  RGGGERWAAGRGSW--LQRLSQHGRRGGGAAPT-----NKPRGP--APRPSFHRPGGHAS 123
           +  G ++AA   +W   Q+ S      G   PT       P  P    RP  +  G +  
Sbjct: 419 KDMGAQYAAASPAWAAAQQRSHPAMSPGTPGPTMGRSQGSPMDPMVMKRPQLYGMGSNPH 478

Query: 124 QCGLASPQSTAP-PARRLGTGGLTR 147
               + PQ ++P P    G  G  R
Sbjct: 479 ----SQPQQSSPYPGGSYGPPGPQR 499


>gi|40068466 AT rich interactive domain 1B (SWI1-like) isoform 1
           [Homo sapiens]
          Length = 2231

 Score = 34.3 bits (77), Expect = 0.067
 Identities = 43/145 (29%), Positives = 55/145 (37%), Gaps = 22/145 (15%)

Query: 15  LLGPCPSGR--GILMPSTSSWSRPPPHCLQPSSPETAKGAVYASFAAAAKRMSARGRLRT 72
           L  P P  R  G   P  SS S PPP   QP S   A G      AAA  + +A G    
Sbjct: 365 LTSPSPMMRSYGGSYPEYSSPSAPPPPPSQPQSQAAAAG------AAAGGQQAAAGMGLG 418

Query: 73  RGGGERWAAGRGSW--LQRLSQHGRRGGGAAPT-----NKPRGP--APRPSFHRPGGHAS 123
           +  G ++AA   +W   Q+ S      G   PT       P  P    RP  +  G +  
Sbjct: 419 KDMGAQYAAASPAWAAAQQRSHPAMSPGTPGPTMGRSQGSPMDPMVMKRPQLYGMGSNPH 478

Query: 124 QCGLASPQSTAP-PARRLGTGGLTR 147
               + PQ ++P P    G  G  R
Sbjct: 479 ----SQPQQSSPYPGGSYGPPGPQR 499


>gi|40068462 AT rich interactive domain 1B (SWI1-like) isoform 3
           [Homo sapiens]
          Length = 2178

 Score = 34.3 bits (77), Expect = 0.067
 Identities = 43/145 (29%), Positives = 55/145 (37%), Gaps = 22/145 (15%)

Query: 15  LLGPCPSGR--GILMPSTSSWSRPPPHCLQPSSPETAKGAVYASFAAAAKRMSARGRLRT 72
           L  P P  R  G   P  SS S PPP   QP S   A G      AAA  + +A G    
Sbjct: 365 LTSPSPMMRSYGGSYPEYSSPSAPPPPPSQPQSQAAAAG------AAAGGQQAAAGMGLG 418

Query: 73  RGGGERWAAGRGSW--LQRLSQHGRRGGGAAPT-----NKPRGP--APRPSFHRPGGHAS 123
           +  G ++AA   +W   Q+ S      G   PT       P  P    RP  +  G +  
Sbjct: 419 KDMGAQYAAASPAWAAAQQRSHPAMSPGTPGPTMGRSQGSPMDPMVMKRPQLYGMGSNPH 478

Query: 124 QCGLASPQSTAP-PARRLGTGGLTR 147
               + PQ ++P P    G  G  R
Sbjct: 479 ----SQPQQSSPYPGGSYGPPGPQR 499


>gi|239747651 PREDICTED: hypothetical protein XP_002348127 [Homo
           sapiens]
          Length = 324

 Score = 33.9 bits (76), Expect = 0.087
 Identities = 23/65 (35%), Positives = 27/65 (41%), Gaps = 7/65 (10%)

Query: 63  RMSARGRLRTRGGGERWAAGRGSWLQRLSQH------GRRGGGAAPTNK-PRGPAPRPSF 115
           R +  G  RT GGG  W A   ++      H      G  GGGA P  + P  P  R S 
Sbjct: 198 REAGEGEGRTEGGGNIWPAPPRAFEVEQDLHCVAPVLGAGGGGALPAGQLPGAPGARASR 257

Query: 116 HRPGG 120
           HR  G
Sbjct: 258 HRGSG 262


>gi|57864582 hornerin [Homo sapiens]
          Length = 2850

 Score = 33.5 bits (75), Expect = 0.11
 Identities = 27/82 (32%), Positives = 39/82 (47%), Gaps = 5/82 (6%)

Query: 54   YASFAAAAKRMSARGRLRTRGGGERWAAGR-GSWLQRLSQHGRRGGGAAPTNKPRGPAPR 112
            Y    + +++ S  GR +  G G+  + GR GS L   S HG+ G G+  ++  RGP   
Sbjct: 1689 YGQHGSGSRQSSGHGR-QGSGSGQSPSRGRHGSGLGHSSSHGQHGSGSGRSSS-RGPYES 1746

Query: 113  PSFHRP--GGHASQCGLASPQS 132
             S H    G H S  G +S  S
Sbjct: 1747 RSGHSSVFGQHESGSGHSSAYS 1768



 Score = 32.7 bits (73), Expect = 0.19
 Identities = 27/82 (32%), Positives = 38/82 (46%), Gaps = 5/82 (6%)

Query: 54   YASFAAAAKRMSARGRLRTRGGGERWAAGR-GSWLQRLSQHGRRGGGAAPTNKPRGPAPR 112
            Y    + +++ S  GR +  G G   + GR GS L   S HG+ G G+  ++  RGP   
Sbjct: 1219 YGQHGSGSRQSSGHGR-QGSGSGHSPSRGRHGSGLGHSSSHGQHGSGSGRSSS-RGPYES 1276

Query: 113  PSFHRP--GGHASQCGLASPQS 132
             S H    G H S  G +S  S
Sbjct: 1277 RSGHSSVFGQHESGSGHSSAYS 1298



 Score = 31.2 bits (69), Expect = 0.57
 Identities = 26/82 (31%), Positives = 38/82 (46%), Gaps = 5/82 (6%)

Query: 54   YASFAAAAKRMSARGRLRTRGGGERWAAGR-GSWLQRLSQHGRRGGGAAPTNKPRGPAPR 112
            Y    + +++ S  GR +  G G+  + GR GS L   S HG+ G G+  ++  RGP   
Sbjct: 2629 YGQHGSGSRQSSGHGR-QGSGSGQSPSRGRHGSGLGHSSSHGQHGSGSGRSSS-RGPYES 2686

Query: 113  PSFHRP--GGHASQCGLASPQS 132
               H    G H S  G +S  S
Sbjct: 2687 RLGHSSVFGQHESGSGHSSAYS 2708



 Score = 30.4 bits (67), Expect = 0.97
 Identities = 26/82 (31%), Positives = 37/82 (45%), Gaps = 5/82 (6%)

Query: 54   YASFAAAAKRMSARGRLRTRGGGERWAAGR-GSWLQRLSQHGRRGGGAAPTNKPRGPAPR 112
            Y    + +++ S  GR +  G G   + GR GS     S HG+ G G+  ++  RGP   
Sbjct: 2159 YGQHGSGSRQSSGHGR-QGSGSGHSPSRGRHGSGSGHSSSHGQHGSGSGRSSS-RGPYES 2216

Query: 113  PSFHRP--GGHASQCGLASPQS 132
             S H    G H S  G +S  S
Sbjct: 2217 RSGHSSVFGQHESGSGHSSAYS 2238


>gi|239756441 PREDICTED: hypothetical protein LOC388199 [Homo
           sapiens]
          Length = 373

 Score = 33.5 bits (75), Expect = 0.11
 Identities = 40/142 (28%), Positives = 51/142 (35%), Gaps = 23/142 (16%)

Query: 16  LGPCPSGRGILMPSTSSWSRPPPHCLQ--PSSPETAKGAVYASFAAAAKRMSARGRLRTR 73
           LGP  +G   L  ST+ W R  P C+   P+S  TA+    A                  
Sbjct: 62  LGPWAAGTHFLAISTTPWGRKTPACISELPTSSGTAQPLANAVCEVQT----------VP 111

Query: 74  GGGERWAAGRGSWLQRLSQHGRRGGGAAPTNKPRGPAPRPSFHRPGGHASQCGLASPQST 133
           G G R    +G+   R   H     G  PT  P GP    + H+   H  +     P   
Sbjct: 112 GPGLR---PQGTPAMRAPSH----KGTPPTPNPWGPEQPQNRHK---HPKKGVTGGPSPP 161

Query: 134 APPARRLG-TGGLTRRVYSKAL 154
            P A R G T G   RV +  L
Sbjct: 162 PPAASRYGQTPGREPRVQAPGL 183


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.317    0.133    0.421 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,011,109
Number of Sequences: 37866
Number of extensions: 589822
Number of successful extensions: 3659
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 290
Number of HSP's that attempted gapping in prelim test: 3358
Number of HSP's gapped (non-prelim): 586
length of query: 192
length of database: 18,247,518
effective HSP length: 97
effective length of query: 95
effective length of database: 14,574,516
effective search space: 1384579020
effective search space used: 1384579020
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.