Guide to the Human Genome
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Name: LACTB Sequence: fasta or formatted (547aa) NCBI GI: 26051231
Description:

lactamase, beta isoform a

Referenced in:

Ribosomes

Other entries for this name:
alt prot [373aa] lactamase, beta isoform b
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.9         43           3
 C cysteine            1.5          8           1
 D aspartate           3.8         21           1
 E glutamate           8.0         44           2
 F phenylalanine       3.3         18           2
 G glycine             8.6         47           3
 H histidine           1.6          9           1
 I isoleucine          3.5         19           2
 K lysine              8.4         46           3
 L leucine             9.5         52           2
 M methionine          2.7         15           2
 N asparagine          4.2         23           2
 P proline             6.0         33           2
 Q glutamine           2.9         16           1
 R arginine            4.8         26           2
 S serine              6.8         37           2
 T threonine           4.0         22           2
 V valine              6.9         38           2
 W tryptophan          1.5          8           1
 Y tyrosine            4.0         22           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   lactamase, beta isoform a 
LACTB                 0.672   lactamase, beta isoform b 
VWA5B1                0.017   von Willebrand factor A domain containing 5B1 [Homo...
MLL2                  0.015   myeloid/lymphoid or mixed-lineage leukemia 2 
LOC646262             0.014   PREDICTED: beta-lactamase-like protein ENSP00000383...
LOC646262             0.014   PREDICTED: beta-lactamase-like protein ENSP00000383...
LOC646262             0.014   PREDICTED: beta-lactamase-like protein ENSP00000383...
MAP1A                 0.013   microtubule-associated protein 1A 
SMARCA4               0.011   SWI/SNF-related matrix-associated actin-dependent r...
SMARCA4               0.011   SWI/SNF-related matrix-associated actin-dependent r...
SMARCA4               0.011   SWI/SNF-related matrix-associated actin-dependent r...
SMARCA4               0.011   SWI/SNF-related matrix-associated actin-dependent r...
SMARCA4               0.011   SWI/SNF-related matrix-associated actin-dependent r...
SMARCA4               0.011   SWI/SNF-related matrix-associated actin-dependent r...
SMARCA4               0.011   SWI/SNF-related matrix-associated actin-dependent re...
MYPOP                 0.009   Myb protein P42POP 
HCN2                  0.009   hyperpolarization activated cyclic nucleotide-gated...
NOS3                  0.009   nitric oxide synthase 3 isoform 4 
NOS3                  0.009   nitric oxide synthase 3 isoform 3 
NOS3                  0.009   nitric oxide synthase 3 isoform 2 
NOS3                  0.009   nitric oxide synthase 3 isoform 1 
ZNRF2                 0.009   zinc finger/RING finger 2 
MEX3A                 0.009   MEX3A protein 
LOC100290769          0.009   PREDICTED: hypothetical protein XP_002346861 
LOC100133305          0.009   PREDICTED: hypothetical protein 
LOC100287407          0.009   PREDICTED: hypothetical protein XP_002342704 
LOC100133305          0.009   PREDICTED: hypothetical protein 
PACS1                 0.009   phosphofurin acidic cluster sorting protein 1 
ZNF628                0.009   zinc finger protein 628 
RSRC2                 0.009   arginine/serine-rich coiled-coil 2 isoform a 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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